| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026583 |
Definition |
Mycobacterium phage Alvin, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
49577 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
63.62 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009123893.1 | NC_026583_p26 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 19399 | 21456 |
| YP_009123938.1 | NC_026583_p71 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 44435 | 44752 |
| YP_009123916.1 | NC_026583_p49 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36283 | 37098 |
| YP_009123913.1 | NC_026583_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35355 | 35585 |
| YP_009123879.1 | NC_026583_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7262 | 8950 |
| YP_009123880.1 | NC_026583_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8947 | 10389 |
| YP_009123883.1 | NC_026583_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11849 | 12859 |
| YP_009123904.1 | NC_026583_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29559 | 29855 |
| YP_009123898.1 | NC_026583_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24319 | 24666 |
| YP_009123897.1 | NC_026583_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23975 | 24322 |
| YP_009123949.1 | NC_026583_p82 | hypothetical protein | phrog_7647 | unknown function | unknown function | -1 | 47702 | 47929 |
| YP_009123927.1 | NC_026583_p60 | hypothetical protein | phrog_2740 | unknown function | unknown function | -1 | 40370 | 40522 |
| YP_009123889.1 | NC_026583_p22 | major tail subunit protein | phrog_117 | major tail protein | tail | 1 | 15121 | 15972 |
| YP_009123885.1 | NC_026583_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13456 | 13905 |
| YP_009123947.1 | NC_026583_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47266 | 47559 |
| YP_009123929.1 | NC_026583_p62 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40952 | 41227 |
| YP_009123948.1 | NC_026583_p81 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 47556 | 47705 |
| YP_009123941.1 | NC_026583_p74 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45960 | 46259 |
| YP_009123882.1 | NC_026583_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11326 | 11838 |
| YP_009123918.1 | NC_026583_p51 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 37236 | 38003 |
| YP_009123899.1 | NC_026583_p32 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 24691 | 26544 |
| YP_009123900.1 | NC_026583_p33 | minor tail subunit | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26537 | 28027 |
| YP_009123871.1 | NC_026583_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1544 | 1978 |
| YP_009123936.1 | NC_026583_p69 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43450 | 44268 |
| YP_009123892.1 | NC_026583_p25 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16904 | 19375 |
| YP_009123874.1 | NC_026583_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3646 | 4338 |
| YP_009123888.1 | NC_026583_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14666 | 15112 |
| YP_009123908.1 | NC_026583_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32210 | 32479 |
| YP_009123923.1 | NC_026583_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39426 | 39587 |
| YP_009123926.1 | NC_026583_p59 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 40249 | 40335 |
| YP_009123944.1 | NC_026583_p77 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 46722 | 46910 |
| YP_009123934.1 | NC_026583_p67 | hypothetical protein | phrog_30883 | unknown function | unknown function | -1 | 42994 | 43194 |
| YP_009123878.1 | NC_026583_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6274 | 7242 |
| YP_009123906.1 | NC_026583_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31625 | 32089 |
| YP_009123922.1 | NC_026583_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38932 | 39447 |
| YP_009123907.1 | NC_026583_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32118 | 32213 |
| YP_009123951.1 | NC_026583_p84 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 48546 | 48731 |
| YP_009123933.1 | NC_026583_p66 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42596 | 42916 |
| YP_009123940.1 | NC_026583_p73 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45186 | 45755 |
| YP_009123950.1 | NC_026583_p83 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 48199 | 48546 |
| YP_009123868.1 | NC_026583_p1 | hypothetical protein | phrog_17889 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 540 | 1067 |
| YP_009123890.1 | NC_026583_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15994 | 16892 |
| YP_009123925.1 | NC_026583_p58 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39786 | 40262 |
| YP_009123939.1 | NC_026583_p72 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 44749 | 45144 |
| YP_009123910.1 | NC_026583_p43 | HNH endonuclease domain protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32855 | 33331 |
| YP_009123887.1 | NC_026583_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14267 | 14662 |
| YP_009123895.1 | NC_026583_p28 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 21635 | 23437 |
| YP_009123953.1 | NC_026583_p86 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 48977 | 49180 |
| YP_009123877.1 | NC_026583_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 4872 | 6284 |
| YP_009123870.1 | NC_026583_p3 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1213 | 1509 |
| YP_009123943.1 | NC_026583_p76 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 46522 | 46725 |
| YP_009123937.1 | NC_026583_p70 | hypothetical protein | phrog_2730 | unknown function | unknown function | -1 | 44265 | 44438 |
| YP_009123921.1 | NC_026583_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38565 | 39086 |
| YP_009123920.1 | NC_026583_p53 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38170 | 38568 |
| YP_009123946.1 | NC_026583_p79 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 47074 | 47202 |
| YP_009123881.1 | NC_026583_p14 | capsid assembly protease | phrog_193 | head maturation protease | head and packaging | 1 | 10386 | 11267 |
| YP_009123931.1 | NC_026583_p64 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42160 | 42306 |
| YP_009123876.1 | NC_026583_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4615 | 4872 |
| YP_009123884.1 | NC_026583_p17 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12938 | 13456 |
| YP_009123886.1 | NC_026583_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13905 | 14267 |
| YP_009123930.1 | NC_026583_p63 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41364 | 42173 |
| YP_009123912.1 | NC_026583_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35260 | 35358 |
| YP_009123903.1 | NC_026583_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28638 | 29438 |
| YP_009123915.1 | NC_026583_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36104 | 36286 |
| YP_009123902.1 | NC_026583_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28450 | 28641 |
| YP_009123911.1 | NC_026583_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33358 | 35187 |
| YP_009123894.1 | NC_026583_p27 | minor tail subunit | phrog_1543 | minor tail protein | tail | 1 | 21453 | 21635 |
| YP_009123872.1 | NC_026583_p5 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 2099 | 2305 |
| YP_009123952.1 | NC_026583_p85 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 48761 | 48844 |
| YP_009123873.1 | NC_026583_p6 | tail protein | phrog_1197 | tail protein | tail | 1 | 2566 | 3636 |
| YP_009123928.1 | NC_026583_p61 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | -1 | 40545 | 40955 |
| YP_009123917.1 | NC_026583_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37091 | 37231 |
| YP_009123945.1 | NC_026583_p78 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46910 | 47077 |
| YP_009123896.1 | NC_026583_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23532 | 23978 |
| YP_009123869.1 | NC_026583_p2 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 1064 | 1216 |
| YP_009123942.1 | NC_026583_p75 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 46256 | 46525 |
| YP_009123932.1 | NC_026583_p65 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42303 | 42599 |
| YP_009123935.1 | NC_026583_p68 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43235 | 43423 |
| YP_009123905.1 | NC_026583_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 30002 | 31504 |
| YP_009123909.1 | NC_026583_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32476 | 32832 |
| YP_009123891.1 | NC_026583_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15994 | 16470 |
| YP_009123901.1 | NC_026583_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28114 | 28440 |
| YP_009123919.1 | NC_026583_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38000 | 38173 |
| YP_009123914.1 | NC_026583_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35616 | 36107 |
| YP_009123875.1 | NC_026583_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4347 | 4607 |
| YP_009123924.1 | NC_026583_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39655 | 39789 |