Genomic map of Mycobacterium phage Alvin (NC_026583)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_026583
Definition
Mycobacterium phage Alvin, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
49577
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
86
%GC
63.62
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009123893.1 NC_026583_p26 minor tail subunit phrog_106 minor tail protein tail 1 19399 21456
YP_009123938.1 NC_026583_p71 hypothetical protein phrog_1584 unknown function unknown function -1 44435 44752
YP_009123916.1 NC_026583_p49 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36283 37098
YP_009123913.1 NC_026583_p46 hypothetical protein phrog_1781 unknown function unknown function -1 35355 35585
YP_009123879.1 NC_026583_p12 terminase phrog_9 terminase large subunit head and packaging 1 7262 8950
YP_009123880.1 NC_026583_p13 portal protein phrog_104 portal protein head and packaging 1 8947 10389
YP_009123883.1 NC_026583_p16 major capsid protein phrog_10 major head protein head and packaging 1 11849 12859
YP_009123904.1 NC_026583_p37 hypothetical protein phrog_411 unknown function unknown function 1 29559 29855
YP_009123898.1 NC_026583_p31 hypothetical protein phrog_1397 unknown function unknown function 1 24319 24666
YP_009123897.1 NC_026583_p30 hypothetical protein phrog_981 minor tail protein tail 1 23975 24322
YP_009123949.1 NC_026583_p82 hypothetical protein phrog_7647 unknown function unknown function -1 47702 47929
YP_009123927.1 NC_026583_p60 hypothetical protein phrog_2740 unknown function unknown function -1 40370 40522
YP_009123889.1 NC_026583_p22 major tail subunit protein phrog_117 major tail protein tail 1 15121 15972
YP_009123885.1 NC_026583_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13456 13905
YP_009123947.1 NC_026583_p80 hypothetical protein singleton unknown function unknown function -1 47266 47559
YP_009123929.1 NC_026583_p62 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 40952 41227
YP_009123948.1 NC_026583_p81 hypothetical protein phrog_932 unknown function unknown function -1 47556 47705
YP_009123941.1 NC_026583_p74 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 45960 46259
YP_009123882.1 NC_026583_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11326 11838
YP_009123918.1 NC_026583_p51 hypothetical protein phrog_221 metallo-phosphoesterase other -1 37236 38003
YP_009123899.1 NC_026583_p32 minor tail subunit phrog_346 minor tail protein tail 1 24691 26544
YP_009123900.1 NC_026583_p33 minor tail subunit phrog_382 minor tail protein with lysin activity tail 1 26537 28027
YP_009123871.1 NC_026583_p4 hypothetical protein phrog_226 minor tail protein tail 1 1544 1978
YP_009123936.1 NC_026583_p69 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43450 44268
YP_009123892.1 NC_026583_p25 tapemeasure phrog_305 tail length tape measure protein tail 1 16904 19375
YP_009123874.1 NC_026583_p7 hypothetical protein phrog_553 minor tail protein tail 1 3646 4338
YP_009123888.1 NC_026583_p21 hypothetical protein phrog_123 tail terminator connector 1 14666 15112
YP_009123908.1 NC_026583_p41 hypothetical protein phrog_1971 unknown function unknown function -1 32210 32479
YP_009123923.1 NC_026583_p56 hypothetical protein phrog_1783 unknown function unknown function -1 39426 39587
YP_009123926.1 NC_026583_p59 hypothetical protein phrog_1019 unknown function unknown function -1 40249 40335
YP_009123944.1 NC_026583_p77 hypothetical protein phrog_1155 unknown function unknown function -1 46722 46910
YP_009123934.1 NC_026583_p67 hypothetical protein phrog_30883 unknown function unknown function -1 42994 43194
YP_009123878.1 NC_026583_p11 lysin B phrog_102 endolysin lysis 1 6274 7242
YP_009123906.1 NC_026583_p39 hypothetical protein phrog_1966 unknown function unknown function -1 31625 32089
YP_009123922.1 NC_026583_p55 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38932 39447
YP_009123907.1 NC_026583_p40 hypothetical protein phrog_1860 unknown function unknown function -1 32118 32213
YP_009123951.1 NC_026583_p84 hypothetical protein phrog_5533 unknown function unknown function -1 48546 48731
YP_009123933.1 NC_026583_p66 hypothetical protein phrog_2184 unknown function unknown function -1 42596 42916
YP_009123940.1 NC_026583_p73 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 45186 45755
YP_009123950.1 NC_026583_p83 hypothetical protein phrog_5017 unknown function unknown function -1 48199 48546
YP_009123868.1 NC_026583_p1 hypothetical protein phrog_17889 endonuclease DNA, RNA and nucleotide metabolism 1 540 1067
YP_009123890.1 NC_026583_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15994 16892
YP_009123925.1 NC_026583_p58 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 39786 40262
YP_009123939.1 NC_026583_p72 hypothetical protein phrog_1809 unknown function unknown function -1 44749 45144
YP_009123910.1 NC_026583_p43 HNH endonuclease domain protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 32855 33331
YP_009123887.1 NC_026583_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14267 14662
YP_009123895.1 NC_026583_p28 minor tail subunit phrog_110 minor tail protein tail 1 21635 23437
YP_009123953.1 NC_026583_p86 hypothetical protein phrog_828 unknown function unknown function -1 48977 49180
YP_009123877.1 NC_026583_p10 lysin A phrog_317 endolysin lysis 1 4872 6284
YP_009123870.1 NC_026583_p3 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1213 1509
YP_009123943.1 NC_026583_p76 hypothetical protein phrog_1387 unknown function unknown function -1 46522 46725
YP_009123937.1 NC_026583_p70 hypothetical protein phrog_2730 unknown function unknown function -1 44265 44438
YP_009123921.1 NC_026583_p54 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38565 39086
YP_009123920.1 NC_026583_p53 hypothetical protein phrog_474 phosphofructokinase other -1 38170 38568
YP_009123946.1 NC_026583_p79 hypothetical protein phrog_2093 unknown function unknown function -1 47074 47202
YP_009123881.1 NC_026583_p14 capsid assembly protease phrog_193 head maturation protease head and packaging 1 10386 11267
YP_009123931.1 NC_026583_p64 hypothetical protein phrog_1705 unknown function unknown function -1 42160 42306
YP_009123876.1 NC_026583_p9 hypothetical protein phrog_747 unknown function unknown function 1 4615 4872
YP_009123884.1 NC_026583_p17 hypothetical protein phrog_1857 head-tail connector protein connector 1 12938 13456
YP_009123886.1 NC_026583_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 13905 14267
YP_009123930.1 NC_026583_p63 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41364 42173
YP_009123912.1 NC_026583_p45 hypothetical protein singleton unknown function unknown function -1 35260 35358
YP_009123903.1 NC_026583_p36 hypothetical protein phrog_754 minor tail protein tail 1 28638 29438
YP_009123915.1 NC_026583_p48 hypothetical protein phrog_499 unknown function unknown function -1 36104 36286
YP_009123902.1 NC_026583_p35 hypothetical protein phrog_1560 unknown function unknown function 1 28450 28641
YP_009123911.1 NC_026583_p44 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33358 35187
YP_009123894.1 NC_026583_p27 minor tail subunit phrog_1543 minor tail protein tail 1 21453 21635
YP_009123872.1 NC_026583_p5 hypothetical protein phrog_2830 unknown function unknown function 1 2099 2305
YP_009123952.1 NC_026583_p85 hypothetical protein phrog_2212 unknown function unknown function -1 48761 48844
YP_009123873.1 NC_026583_p6 tail protein phrog_1197 tail protein tail 1 2566 3636
YP_009123928.1 NC_026583_p61 hypothetical protein phrog_1573 DNA methyltransferase other -1 40545 40955
YP_009123917.1 NC_026583_p50 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 37091 37231
YP_009123945.1 NC_026583_p78 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 46910 47077
YP_009123896.1 NC_026583_p29 hypothetical protein phrog_352 minor tail protein tail 1 23532 23978
YP_009123869.1 NC_026583_p2 hypothetical protein phrog_4649 unknown function unknown function 1 1064 1216
YP_009123942.1 NC_026583_p75 hypothetical protein phrog_1720 unknown function unknown function -1 46256 46525
YP_009123932.1 NC_026583_p65 hypothetical protein phrog_520 unknown function unknown function -1 42303 42599
YP_009123935.1 NC_026583_p68 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 43235 43423
YP_009123905.1 NC_026583_p38 integrase phrog_95 integrase integration and excision 1 30002 31504
YP_009123909.1 NC_026583_p42 hypothetical protein phrog_383 unknown function unknown function -1 32476 32832
YP_009123891.1 NC_026583_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15994 16470
YP_009123901.1 NC_026583_p34 hypothetical protein phrog_644 unknown function unknown function 1 28114 28440
YP_009123919.1 NC_026583_p52 hypothetical protein phrog_1503 unknown function unknown function -1 38000 38173
YP_009123914.1 NC_026583_p47 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35616 36107
YP_009123875.1 NC_026583_p8 hypothetical protein phrog_1718 tail protein tail 1 4347 4607
YP_009123924.1 NC_026583_p57 hypothetical protein phrog_397 unknown function unknown function -1 39655 39789