Genomic map of Mycobacterium phage Squirty (NC_026588)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_026588
Definition
Mycobacterium phage Squirty, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
60285
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
62.4
Number of singletons
6
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009124554.1 NC_026588_p2 terminase small subunit phrog_4479 terminase small subunit head and packaging 1 444 698
YP_009124642.1 NC_026588_p90 hypothetical protein phrog_5186 unknown function unknown function 1 54979 55152
YP_009124604.1 NC_026588_p52 hypothetical protein phrog_658 unknown function unknown function 1 37353 37712
YP_009124558.1 NC_026588_p6 scaffolding protein phrog_4638 head scaffolding protein head and packaging 1 4407 4943
YP_009124561.1 NC_026588_p9 head-to-tail connector phrog_763 head-tail adaptor connector 1 6294 6623
YP_009124652.1 NC_026588_p100 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 57940 59376
YP_009124651.1 NC_026588_p99 hypothetical protein phrog_2057 unknown function unknown function 1 57753 57914
YP_009124611.1 NC_026588_p59 hypothetical protein phrog_658 unknown function unknown function 1 40095 40442
YP_009124621.1 NC_026588_p69 hypothetical protein singleton unknown function unknown function 1 47385 47552
YP_009124576.1 NC_026588_p24 antitoxin of toxin-antitoxin stability system phrog_2268 antitoxin from a toxin-antitoxin system moron, auxiliary metabolic gene and host takeover -1 21876 22124
YP_009124643.1 NC_026588_p91 hypothetical protein singleton unknown function unknown function 1 55205 55351
YP_009124579.1 NC_026588_p27 holin phrog_526 holin lysis 1 23877 24275
YP_009124625.1 NC_026588_p73 hypothetical protein phrog_2045 unknown function unknown function 1 48317 49249
YP_009124614.1 NC_026588_p62 hypothetical protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 41343 41708
YP_009124647.1 NC_026588_p95 hypothetical protein phrog_1869 unknown function unknown function 1 56734 56901
YP_009124563.1 NC_026588_p11 head-to-tail connector phrog_813 head-tail adaptor connector 1 6946 7350
YP_009124560.1 NC_026588_p8 head-to-tail connector phrog_137 head-tail adaptor Ad1 connector 1 5926 6297
YP_009124638.1 NC_026588_p86 hypothetical protein phrog_1901 unknown function unknown function 1 54093 54284
YP_009124557.1 NC_026588_p5 capsid maturation protease phrog_193 head maturation protease head and packaging 1 3603 4328
YP_009124645.1 NC_026588_p93 hypothetical protein phrog_1467 unknown function unknown function 1 55759 56403
YP_009124609.1 NC_026588_p57 hypothetical protein phrog_3416 unknown function unknown function 1 38990 39736
YP_009124590.1 NC_026588_p38 immunity repressor phrog_20450 transcriptional repressor transcription regulation -1 31258 31821
YP_009124624.1 NC_026588_p72 hypothetical protein phrog_17676 unknown function unknown function 1 48165 48320
YP_009124612.1 NC_026588_p60 WhiB phrog_1333 unknown function unknown function 1 40442 40849
YP_009124637.1 NC_026588_p85 hypothetical protein phrog_4152 unknown function unknown function 1 53695 54096
YP_009124568.1 NC_026588_p16 minor tail protein phrog_106 minor tail protein tail 1 12917 14626
YP_009124603.1 NC_026588_p51 hypothetical protein phrog_15773 unknown function unknown function 1 36283 37353
YP_009124626.1 NC_026588_p74 hypothetical protein phrog_464 unknown function unknown function 1 49246 49641
YP_009124607.1 NC_026588_p55 hypothetical protein phrog_1816 unknown function unknown function 1 38391 38630
YP_009124618.1 NC_026588_p66 AAA ATPase phrog_1366 unknown function unknown function 1 42518 43399
YP_009124553.1 NC_026588_p1 hypothetical protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 40 372
YP_009124591.1 NC_026588_p39 CRO protein phrog_19814 unknown function unknown function 1 31951 32283
YP_009124619.1 NC_026588_p67 HNH endonuclease phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43396 43758
YP_009124584.1 NC_026588_p32 hypothetical protein phrog_16514 unknown function unknown function -1 27697 27855
YP_009124566.1 NC_026588_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8390 8941
YP_009124564.1 NC_026588_p12 major tail subunit phrog_476 major tail protein tail 1 7454 8263
YP_009124574.1 NC_026588_p22 hypothetical protein phrog_240 head protein head and packaging 1 21315 21695
YP_009124636.1 NC_026588_p84 hypothetical protein singleton unknown function unknown function 1 53585 53698
YP_009124588.1 NC_026588_p36 hypothetical protein phrog_1948 unknown function unknown function -1 30141 30617
YP_009124555.1 NC_026588_p3 terminase large subunit phrog_2 terminase large subunit head and packaging 1 670 2157
YP_009124587.1 NC_026588_p35 integrase phrog_1 integrase integration and excision 1 28972 30078
YP_009124600.1 NC_026588_p48 hypothetical protein phrog_1816 unknown function unknown function 1 34919 35185
YP_009124573.1 NC_026588_p21 hypothetical protein phrog_6030 unknown function unknown function 1 21076 21315
YP_009124594.1 NC_026588_p42 hypothetical protein phrog_2025 unknown function unknown function 1 33408 33710
YP_009124648.1 NC_026588_p96 hypothetical protein phrog_1694 unknown function unknown function 1 56914 57111
YP_009124585.1 NC_026588_p33 hypothetical protein phrog_1712 unknown function unknown function -1 27905 28243
YP_009124571.1 NC_026588_p19 minor tail protein phrog_746 minor tail protein tail 1 17305 19920
YP_009124610.1 NC_026588_p58 hypothetical protein phrog_1849 unknown function unknown function 1 39817 40098
YP_009124631.1 NC_026588_p79 hypothetical protein phrog_1943 unknown function unknown function 1 51431 51625
YP_009124556.1 NC_026588_p4 portal protein phrog_104 portal protein head and packaging 1 2198 3619
YP_009124589.1 NC_026588_p37 hypothetical protein phrog_87 metallo-protease other -1 30631 31074
YP_009124567.1 NC_026588_p15 tapemeasure phrog_1942 tail length tape measure protein tail 1 9323 12916
YP_009124597.1 NC_026588_p45 hypothetical protein phrog_22947 unknown function unknown function 1 34075 34266
YP_009124615.1 NC_026588_p63 hypothetical protein phrog_2078 unknown function unknown function 1 41708 41863
YP_009124577.1 NC_026588_p25 cytotoxic translational repressor of toxin-antitoxin stability system phrog_1213 RelE-like toxin moron, auxiliary metabolic gene and host takeover -1 22121 22432
YP_009124599.1 NC_026588_p47 hypothetical protein phrog_3507 unknown function unknown function 1 34608 34922
YP_009124606.1 NC_026588_p54 hypothetical protein phrog_2021 unknown function unknown function 1 37873 38295
YP_009124598.1 NC_026588_p46 hypothetical protein phrog_23722 unknown function unknown function 1 34270 34611
YP_009124586.1 NC_026588_p34 non-functional integrase singleton unknown function unknown function -1 28289 28639
YP_009124582.1 NC_026588_p30 hypothetical protein phrog_12868 unknown function unknown function 1 25485 25688
YP_009124565.1 NC_026588_p13 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8390 9326
YP_009124654.1 NC_026588_p102 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 59582 60193
YP_009124581.1 NC_026588_p29 hypothetical protein singleton unknown function unknown function 1 24770 25525
YP_009124583.1 NC_026588_p31 RecG-like DNA helicase phrog_12156 DNA helicase DNA, RNA and nucleotide metabolism -1 26096 27532
YP_009124569.1 NC_026588_p17 minor tail protein phrog_110 minor tail protein tail 1 14712 16421
YP_009124649.1 NC_026588_p97 hypothetical protein phrog_1186 unknown function unknown function 1 57108 57521
YP_009124575.1 NC_026588_p23 hypothetical protein phrog_1172 unknown function unknown function 1 21695 21868
YP_009124635.1 NC_026588_p83 hypothetical protein phrog_15197 unknown function unknown function 1 53283 53588
YP_009124634.1 NC_026588_p82 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 52545 53147
YP_009124601.1 NC_026588_p49 hypothetical protein phrog_1797 unknown function unknown function 1 35182 35976
YP_009124570.1 NC_026588_p18 minor tail protein phrog_732 minor tail protein tail 1 16478 17308
YP_009124632.1 NC_026588_p80 hypothetical protein phrog_1573 DNA methyltransferase other 1 51622 52227
YP_009124641.1 NC_026588_p89 hypothetical protein phrog_1545 unknown function unknown function 1 54845 54982
YP_009124562.1 NC_026588_p10 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6630 6956
YP_009124650.1 NC_026588_p98 hypothetical protein phrog_1385 unknown function unknown function 1 57518 57760
YP_009124629.1 NC_026588_p77 hypothetical protein phrog_2080 unknown function unknown function 1 50791 51054
YP_009124592.1 NC_026588_p40 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 32337 33116
YP_009124602.1 NC_026588_p50 hypothetical protein phrog_9601 unknown function unknown function 1 36035 36286
YP_009124608.1 NC_026588_p56 hypothetical protein phrog_780 unknown function unknown function 1 38627 38980
YP_009124605.1 NC_026588_p53 hypothetical protein phrog_11875 unknown function unknown function 1 37709 37876
YP_009124622.1 NC_026588_p70 hypothetical protein singleton unknown function unknown function 1 47549 47848
YP_009124596.1 NC_026588_p44 hypothetical protein phrog_1840 excisionase integration and excision 1 33796 34068
YP_009124620.1 NC_026588_p68 DNA methylase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 43755 47360
YP_009124640.1 NC_026588_p88 hypothetical protein phrog_1091 unknown function unknown function 1 54631 54840
YP_009124613.1 NC_026588_p61 hypothetical protein phrog_2096 unknown function unknown function 1 40846 41346
YP_009124633.1 NC_026588_p81 hypothetical protein phrog_647 unknown function unknown function 1 52224 52505
YP_009124630.1 NC_026588_p78 hypothetical protein phrog_6275 unknown function unknown function 1 51051 51431
YP_009124623.1 NC_026588_p71 hypothetical protein phrog_11559 unknown function unknown function 1 47909 48112
YP_009124578.1 NC_026588_p26 lysin A phrog_1519 endolysin lysis 1 22516 23880
YP_009124628.1 NC_026588_p76 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 49943 50794
YP_009124595.1 NC_026588_p43 hypothetical protein phrog_5563 unknown function unknown function 1 33707 33799
YP_009124627.1 NC_026588_p75 hypothetical protein phrog_25330 unknown function unknown function 1 49654 49914
YP_009124644.1 NC_026588_p92 hypothetical protein phrog_2247 unknown function unknown function 1 55499 55762
YP_009124572.1 NC_026588_p20 minor tail protein phrog_416 minor tail protein tail 1 19922 21079
YP_009124593.1 NC_026588_p41 hypothetical protein phrog_35761 unknown function unknown function 1 33119 33421
YP_009124559.1 NC_026588_p7 major capsid protein phrog_10 major head protein head and packaging 1 5006 5914
YP_009124616.1 NC_026588_p64 hypothetical protein phrog_1834 unknown function unknown function 1 41860 42282
YP_009124639.1 NC_026588_p87 hypothetical protein phrog_12283 unknown function unknown function 1 54281 54634
YP_009124653.1 NC_026588_p101 hypothetical protein phrog_1693 unknown function unknown function 1 59373 59585
YP_009124617.1 NC_026588_p65 hypothetical protein phrog_2632 unknown function unknown function 1 42279 42521
YP_009124580.1 NC_026588_p28 hypothetical protein phrog_404 minor tail protein tail 1 24272 24643
YP_009124646.1 NC_026588_p94 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 56513 56737