| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026588 |
Definition |
Mycobacterium phage Squirty, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
60285 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
62.4 |
Number of singletons |
6 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009124554.1 | NC_026588_p2 | terminase small subunit | phrog_4479 | terminase small subunit | head and packaging | 1 | 444 | 698 |
| YP_009124642.1 | NC_026588_p90 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 54979 | 55152 |
| YP_009124604.1 | NC_026588_p52 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 37353 | 37712 |
| YP_009124558.1 | NC_026588_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4407 | 4943 |
| YP_009124561.1 | NC_026588_p9 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6294 | 6623 |
| YP_009124652.1 | NC_026588_p100 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57940 | 59376 |
| YP_009124651.1 | NC_026588_p99 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 57753 | 57914 |
| YP_009124611.1 | NC_026588_p59 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40095 | 40442 |
| YP_009124621.1 | NC_026588_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47385 | 47552 |
| YP_009124576.1 | NC_026588_p24 | antitoxin of toxin-antitoxin stability system | phrog_2268 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | -1 | 21876 | 22124 |
| YP_009124643.1 | NC_026588_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55205 | 55351 |
| YP_009124579.1 | NC_026588_p27 | holin | phrog_526 | holin | lysis | 1 | 23877 | 24275 |
| YP_009124625.1 | NC_026588_p73 | hypothetical protein | phrog_2045 | unknown function | unknown function | 1 | 48317 | 49249 |
| YP_009124614.1 | NC_026588_p62 | hypothetical protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41343 | 41708 |
| YP_009124647.1 | NC_026588_p95 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 56734 | 56901 |
| YP_009124563.1 | NC_026588_p11 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 6946 | 7350 |
| YP_009124560.1 | NC_026588_p8 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5926 | 6297 |
| YP_009124638.1 | NC_026588_p86 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 54093 | 54284 |
| YP_009124557.1 | NC_026588_p5 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3603 | 4328 |
| YP_009124645.1 | NC_026588_p93 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 55759 | 56403 |
| YP_009124609.1 | NC_026588_p57 | hypothetical protein | phrog_3416 | unknown function | unknown function | 1 | 38990 | 39736 |
| YP_009124590.1 | NC_026588_p38 | immunity repressor | phrog_20450 | transcriptional repressor | transcription regulation | -1 | 31258 | 31821 |
| YP_009124624.1 | NC_026588_p72 | hypothetical protein | phrog_17676 | unknown function | unknown function | 1 | 48165 | 48320 |
| YP_009124612.1 | NC_026588_p60 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 40442 | 40849 |
| YP_009124637.1 | NC_026588_p85 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 53695 | 54096 |
| YP_009124568.1 | NC_026588_p16 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 12917 | 14626 |
| YP_009124603.1 | NC_026588_p51 | hypothetical protein | phrog_15773 | unknown function | unknown function | 1 | 36283 | 37353 |
| YP_009124626.1 | NC_026588_p74 | hypothetical protein | phrog_464 | unknown function | unknown function | 1 | 49246 | 49641 |
| YP_009124607.1 | NC_026588_p55 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 38391 | 38630 |
| YP_009124618.1 | NC_026588_p66 | AAA ATPase | phrog_1366 | unknown function | unknown function | 1 | 42518 | 43399 |
| YP_009124553.1 | NC_026588_p1 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40 | 372 |
| YP_009124591.1 | NC_026588_p39 | CRO protein | phrog_19814 | unknown function | unknown function | 1 | 31951 | 32283 |
| YP_009124619.1 | NC_026588_p67 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43396 | 43758 |
| YP_009124584.1 | NC_026588_p32 | hypothetical protein | phrog_16514 | unknown function | unknown function | -1 | 27697 | 27855 |
| YP_009124566.1 | NC_026588_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8390 | 8941 |
| YP_009124564.1 | NC_026588_p12 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7454 | 8263 |
| YP_009124574.1 | NC_026588_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 21315 | 21695 |
| YP_009124636.1 | NC_026588_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53585 | 53698 |
| YP_009124588.1 | NC_026588_p36 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 30141 | 30617 |
| YP_009124555.1 | NC_026588_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 670 | 2157 |
| YP_009124587.1 | NC_026588_p35 | integrase | phrog_1 | integrase | integration and excision | 1 | 28972 | 30078 |
| YP_009124600.1 | NC_026588_p48 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 34919 | 35185 |
| YP_009124573.1 | NC_026588_p21 | hypothetical protein | phrog_6030 | unknown function | unknown function | 1 | 21076 | 21315 |
| YP_009124594.1 | NC_026588_p42 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 33408 | 33710 |
| YP_009124648.1 | NC_026588_p96 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 56914 | 57111 |
| YP_009124585.1 | NC_026588_p33 | hypothetical protein | phrog_1712 | unknown function | unknown function | -1 | 27905 | 28243 |
| YP_009124571.1 | NC_026588_p19 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 17305 | 19920 |
| YP_009124610.1 | NC_026588_p58 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 39817 | 40098 |
| YP_009124631.1 | NC_026588_p79 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 51431 | 51625 |
| YP_009124556.1 | NC_026588_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2198 | 3619 |
| YP_009124589.1 | NC_026588_p37 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 30631 | 31074 |
| YP_009124567.1 | NC_026588_p15 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9323 | 12916 |
| YP_009124597.1 | NC_026588_p45 | hypothetical protein | phrog_22947 | unknown function | unknown function | 1 | 34075 | 34266 |
| YP_009124615.1 | NC_026588_p63 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 41708 | 41863 |
| YP_009124577.1 | NC_026588_p25 | cytotoxic translational repressor of toxin-antitoxin stability system | phrog_1213 | RelE-like toxin | moron, auxiliary metabolic gene and host takeover | -1 | 22121 | 22432 |
| YP_009124599.1 | NC_026588_p47 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 34608 | 34922 |
| YP_009124606.1 | NC_026588_p54 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 37873 | 38295 |
| YP_009124598.1 | NC_026588_p46 | hypothetical protein | phrog_23722 | unknown function | unknown function | 1 | 34270 | 34611 |
| YP_009124586.1 | NC_026588_p34 | non-functional integrase | singleton | unknown function | unknown function | -1 | 28289 | 28639 |
| YP_009124582.1 | NC_026588_p30 | hypothetical protein | phrog_12868 | unknown function | unknown function | 1 | 25485 | 25688 |
| YP_009124565.1 | NC_026588_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8390 | 9326 |
| YP_009124654.1 | NC_026588_p102 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 59582 | 60193 |
| YP_009124581.1 | NC_026588_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24770 | 25525 |
| YP_009124583.1 | NC_026588_p31 | RecG-like DNA helicase | phrog_12156 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 26096 | 27532 |
| YP_009124569.1 | NC_026588_p17 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14712 | 16421 |
| YP_009124649.1 | NC_026588_p97 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 57108 | 57521 |
| YP_009124575.1 | NC_026588_p23 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 21695 | 21868 |
| YP_009124635.1 | NC_026588_p83 | hypothetical protein | phrog_15197 | unknown function | unknown function | 1 | 53283 | 53588 |
| YP_009124634.1 | NC_026588_p82 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52545 | 53147 |
| YP_009124601.1 | NC_026588_p49 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 35182 | 35976 |
| YP_009124570.1 | NC_026588_p18 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16478 | 17308 |
| YP_009124632.1 | NC_026588_p80 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 51622 | 52227 |
| YP_009124641.1 | NC_026588_p89 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 54845 | 54982 |
| YP_009124562.1 | NC_026588_p10 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6630 | 6956 |
| YP_009124650.1 | NC_026588_p98 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 57518 | 57760 |
| YP_009124629.1 | NC_026588_p77 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 50791 | 51054 |
| YP_009124592.1 | NC_026588_p40 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 32337 | 33116 |
| YP_009124602.1 | NC_026588_p50 | hypothetical protein | phrog_9601 | unknown function | unknown function | 1 | 36035 | 36286 |
| YP_009124608.1 | NC_026588_p56 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 38627 | 38980 |
| YP_009124605.1 | NC_026588_p53 | hypothetical protein | phrog_11875 | unknown function | unknown function | 1 | 37709 | 37876 |
| YP_009124622.1 | NC_026588_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47549 | 47848 |
| YP_009124596.1 | NC_026588_p44 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 33796 | 34068 |
| YP_009124620.1 | NC_026588_p68 | DNA methylase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 43755 | 47360 |
| YP_009124640.1 | NC_026588_p88 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 54631 | 54840 |
| YP_009124613.1 | NC_026588_p61 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 40846 | 41346 |
| YP_009124633.1 | NC_026588_p81 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 52224 | 52505 |
| YP_009124630.1 | NC_026588_p78 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 51051 | 51431 |
| YP_009124623.1 | NC_026588_p71 | hypothetical protein | phrog_11559 | unknown function | unknown function | 1 | 47909 | 48112 |
| YP_009124578.1 | NC_026588_p26 | lysin A | phrog_1519 | endolysin | lysis | 1 | 22516 | 23880 |
| YP_009124628.1 | NC_026588_p76 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 49943 | 50794 |
| YP_009124595.1 | NC_026588_p43 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 33707 | 33799 |
| YP_009124627.1 | NC_026588_p75 | hypothetical protein | phrog_25330 | unknown function | unknown function | 1 | 49654 | 49914 |
| YP_009124644.1 | NC_026588_p92 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 55499 | 55762 |
| YP_009124572.1 | NC_026588_p20 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 19922 | 21079 |
| YP_009124593.1 | NC_026588_p41 | hypothetical protein | phrog_35761 | unknown function | unknown function | 1 | 33119 | 33421 |
| YP_009124559.1 | NC_026588_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5006 | 5914 |
| YP_009124616.1 | NC_026588_p64 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 41860 | 42282 |
| YP_009124639.1 | NC_026588_p87 | hypothetical protein | phrog_12283 | unknown function | unknown function | 1 | 54281 | 54634 |
| YP_009124653.1 | NC_026588_p101 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 59373 | 59585 |
| YP_009124617.1 | NC_026588_p65 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 42279 | 42521 |
| YP_009124580.1 | NC_026588_p28 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 24272 | 24643 |
| YP_009124646.1 | NC_026588_p94 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 56513 | 56737 |