| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026598 |
Definition |
Mycobacterium phage Milly, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
58211 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
68.31 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009125551.1 | NC_026598_p77 | DNA binding domain protein | phrog_908 | unknown function | unknown function | 1 | 51107 | 52009 |
| YP_009125530.1 | NC_026598_p56 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 40517 | 41149 |
| YP_009125524.1 | NC_026598_p50 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 38071 | 38289 |
| YP_009125545.1 | NC_026598_p71 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46475 | 46819 |
| YP_009125486.1 | NC_026598_p12 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 7693 | 7965 |
| YP_009125485.1 | NC_026598_p11 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 7362 | 7712 |
| YP_009125522.1 | NC_026598_p48 | Xis | phrog_1840 | excisionase | integration and excision | 1 | 37512 | 37769 |
| YP_009125557.1 | NC_026598_p83 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 53925 | 54704 |
| YP_009125504.1 | NC_026598_p30 | holin | phrog_565 | holin | lysis | 1 | 26001 | 26387 |
| YP_009125562.1 | NC_026598_p88 | hypothetical protein | phrog_6135 | unknown function | unknown function | 1 | 56157 | 56420 |
| YP_009125494.1 | NC_026598_p20 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 16782 | 17246 |
| YP_009125568.1 | NC_026598_p94 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 57772 | 58050 |
| YP_009125544.1 | NC_026598_p70 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 46311 | 46478 |
| YP_009125505.1 | NC_026598_p31 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 26470 | 26889 |
| YP_009125477.1 | NC_026598_p3 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 426 | 674 |
| YP_009125533.1 | NC_026598_p59 | hypothetical protein | phrog_18188 | unknown function | unknown function | 1 | 41805 | 41921 |
| YP_009125556.1 | NC_026598_p82 | SprT-like protein | phrog_1006 | unknown function | unknown function | 1 | 53316 | 53885 |
| YP_009125490.1 | NC_026598_p16 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 9253 | 9702 |
| YP_009125529.1 | NC_026598_p55 | hydrolase domain protein | phrog_15484 | hydrolase | other | 1 | 39762 | 40520 |
| YP_009125475.1 | NC_026598_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 88 | 222 |
| YP_009125539.1 | NC_026598_p65 | hypothetical protein | phrog_14762 | unknown function | unknown function | 1 | 44691 | 45011 |
| YP_009125548.1 | NC_026598_p74 | RusA | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 49842 | 50477 |
| YP_009125507.1 | NC_026598_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 27367 | 27615 |
| YP_009125488.1 | NC_026598_p14 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8532 | 9146 |
| YP_009125558.1 | NC_026598_p84 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 54701 | 54961 |
| YP_009125482.1 | NC_026598_p8 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 5349 | 5891 |
| YP_009125547.1 | NC_026598_p73 | hypothetical protein | phrog_27140 | unknown function | unknown function | 1 | 49375 | 49839 |
| YP_009125515.1 | NC_026598_p41 | DNA binding domain protein | phrog_4095 | unknown function | unknown function | 1 | 32168 | 32866 |
| YP_009125483.1 | NC_026598_p9 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5947 | 6864 |
| YP_009125502.1 | NC_026598_p28 | lysin A | phrog_1519 | endolysin | lysis | 1 | 23083 | 24774 |
| YP_009125484.1 | NC_026598_p10 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6976 | 7362 |
| YP_009125497.1 | NC_026598_p23 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 18661 | 21000 |
| YP_009125542.1 | NC_026598_p68 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 45460 | 45978 |
| YP_009125538.1 | NC_026598_p64 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 44382 | 44600 |
| YP_009125503.1 | NC_026598_p29 | lysin B | phrog_102 | endolysin | lysis | 1 | 24780 | 25982 |
| YP_009125531.1 | NC_026598_p57 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 41142 | 41537 |
| YP_009125478.1 | NC_026598_p4 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 652 | 2076 |
| YP_009125498.1 | NC_026598_p24 | minor tail protein | phrog_3901 | unknown function | unknown function | 1 | 21001 | 21282 |
| YP_009125514.1 | NC_026598_p40 | hypothetical protein | phrog_806 | unknown function | unknown function | -1 | 31467 | 32030 |
| YP_009125487.1 | NC_026598_p13 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 7962 | 8381 |
| YP_009125495.1 | NC_026598_p21 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 17339 | 18418 |
| YP_009125492.1 | NC_026598_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13889 | 15016 |
| YP_009125501.1 | NC_026598_p27 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22685 | 23053 |
| YP_009125516.1 | NC_026598_p42 | queuine tRNA-ribosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 32988 | 33833 |
| YP_009125564.1 | NC_026598_p90 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 56870 | 57037 |
| YP_009125525.1 | NC_026598_p51 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 38286 | 38567 |
| YP_009125550.1 | NC_026598_p76 | hypothetical protein | phrog_15365 | unknown function | unknown function | 1 | 50785 | 51114 |
| YP_009125512.1 | NC_026598_p38 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30315 | 31019 |
| YP_009125535.1 | NC_026598_p61 | hydrolase | phrog_789 | esterase/lipase | other | 1 | 42534 | 43358 |
| YP_009125493.1 | NC_026598_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15013 | 16782 |
| YP_009125541.1 | NC_026598_p67 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 45272 | 45391 |
| YP_009125554.1 | NC_026598_p80 | hypothetical protein | phrog_14958 | unknown function | unknown function | 1 | 52756 | 52893 |
| YP_009125508.1 | NC_026598_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27602 | 28786 |
| YP_009125560.1 | NC_026598_p86 | hypothetical protein | phrog_7638 | unknown function | unknown function | 1 | 55310 | 55798 |
| YP_009125532.1 | NC_026598_p58 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 41530 | 41808 |
| YP_009125517.1 | NC_026598_p43 | integrase | phrog_1 | integrase | integration and excision | 1 | 34290 | 35390 |
| YP_009125565.1 | NC_026598_p91 | hypothetical protein | phrog_12460 | unknown function | unknown function | 1 | 57047 | 57283 |
| YP_009125510.1 | NC_026598_p36 | transcription factor | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29410 | 29814 |
| YP_009125509.1 | NC_026598_p35 | hypothetical protein | phrog_12831 | transcriptional repressor | transcription regulation | 1 | 28944 | 29279 |
| YP_009125537.1 | NC_026598_p63 | hypothetical protein | phrog_15653 | unknown function | unknown function | 1 | 44209 | 44385 |
| YP_009125566.1 | NC_026598_p92 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 57296 | 57592 |
| YP_009125500.1 | NC_026598_p26 | hypothetical protein | phrog_2269 | unknown function | unknown function | 1 | 22292 | 22531 |
| YP_009125476.1 | NC_026598_p2 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 224 | 436 |
| YP_009125481.1 | NC_026598_p7 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 5091 | 5276 |
| YP_009125499.1 | NC_026598_p25 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 21282 | 22277 |
| YP_009125559.1 | NC_026598_p85 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 54955 | 55176 |
| YP_009125552.1 | NC_026598_p78 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 52006 | 52467 |
| YP_009125553.1 | NC_026598_p79 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 52464 | 52733 |
| YP_009125489.1 | NC_026598_p15 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 9253 | 10115 |
| YP_009125563.1 | NC_026598_p89 | hypothetical protein | phrog_15374 | unknown function | unknown function | 1 | 56544 | 56873 |
| YP_009125523.1 | NC_026598_p49 | hypothetical protein | phrog_15371 | unknown function | unknown function | 1 | 37774 | 37995 |
| YP_009125567.1 | NC_026598_p93 | hypothetical protein | phrog_15574 | unknown function | unknown function | 1 | 57605 | 57775 |
| YP_009125480.1 | NC_026598_p6 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 3574 | 5094 |
| YP_009125519.1 | NC_026598_p45 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 35717 | 36565 |
| YP_009125511.1 | NC_026598_p37 | hypothetical protein | phrog_14992 | unknown function | unknown function | 1 | 29822 | 30196 |
| YP_009125543.1 | NC_026598_p69 | NrdH-like glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 46066 | 46311 |
| YP_009125518.1 | NC_026598_p44 | hypothetical protein | phrog_27584 | unknown function | unknown function | 1 | 35416 | 35658 |
| YP_009125540.1 | NC_026598_p66 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 45008 | 45217 |
| YP_009125561.1 | NC_026598_p87 | hypothetical protein | phrog_26442 | unknown function | unknown function | 1 | 55795 | 56034 |
| YP_009125526.1 | NC_026598_p52 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 38581 | 38790 |
| YP_009125520.1 | NC_026598_p46 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 36653 | 37024 |
| YP_009125521.1 | NC_026598_p47 | transcription regulator | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 37198 | 37515 |
| YP_009125506.1 | NC_026598_p32 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 26879 | 27370 |
| YP_009125491.1 | NC_026598_p17 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 10116 | 13784 |
| YP_009125536.1 | NC_026598_p62 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43355 | 44212 |
| YP_009125555.1 | NC_026598_p81 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 52951 | 53262 |
| YP_009125479.1 | NC_026598_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2088 | 3593 |
| YP_009125546.1 | NC_026598_p72 | DNA primase/helicase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 46832 | 49378 |
| YP_009125527.1 | NC_026598_p53 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 38795 | 39535 |
| YP_009125528.1 | NC_026598_p54 | WhiB-like protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39532 | 39765 |
| YP_009125549.1 | NC_026598_p75 | hypothetical protein | phrog_17570 | unknown function | unknown function | 1 | 50474 | 50788 |
| YP_009125534.1 | NC_026598_p60 | DnaQ | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 42004 | 42537 |
| YP_009125496.1 | NC_026598_p22 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 18423 | 18677 |
| YP_009125513.1 | NC_026598_p39 | hypothetical protein | phrog_549 | unknown function | unknown function | -1 | 31087 | 31470 |