| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026605 |
Definition |
Mycobacterium phage Malithi, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pclasvirinae; Fishburnevirus. |
DB of origin |
REFSEQ |
Length |
46869 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
67.09 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009126005.1 | NC_026605_p50 | RusA-like protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34847 | 35350 |
| YP_009125999.1 | NC_026605_p44 | hypothetical protein | phrog_11260 | unknown function | unknown function | 1 | 31265 | 31387 |
| YP_009126011.1 | NC_026605_p56 | methyltransferase | phrog_8769 | methyltransferase | other | 1 | 37944 | 38147 |
| YP_009125967.1 | NC_026605_p12 | hypothetical protein | phrog_2325 | minor tail protein | tail | 1 | 7935 | 8348 |
| YP_009125993.1 | NC_026605_p38 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 29723 | 30226 |
| YP_009126026.1 | NC_026605_p71 | hypothetical protein | phrog_2202 | unknown function | unknown function | 1 | 44156 | 44482 |
| YP_009125963.1 | NC_026605_p8 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6592 | 6954 |
| YP_009125982.1 | NC_026605_p27 | lysin B | phrog_102 | endolysin | lysis | 1 | 23977 | 25143 |
| YP_009125985.2 | NC_026605_p30 | integrase | phrog_1 | integrase | integration and excision | -1 | 25843 | 26799 |
| YP_009126023.1 | NC_026605_p68 | hypothetical protein | phrog_10505 | unknown function | unknown function | 1 | 43049 | 43231 |
| YP_009125972.1 | NC_026605_p17 | tape measure protein | phrog_2337 | tail length tape measure protein | tail | 1 | 10918 | 14568 |
| YP_009126029.1 | NC_026605_p74 | hypothetical protein | phrog_4738 | transcriptional repressor | transcription regulation | 1 | 44849 | 45022 |
| YP_009125974.1 | NC_026605_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16310 | 18046 |
| YP_009126004.1 | NC_026605_p49 | FtsK-like protein | phrog_6152 | unknown function | unknown function | 1 | 33783 | 34850 |
| YP_009125957.1 | NC_026605_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 413 | 2089 |
| YP_009125975.1 | NC_026605_p20 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 18069 | 18962 |
| YP_009126033.1 | NC_026605_p78 | hypothetical protein | phrog_7285 | unknown function | unknown function | 1 | 46025 | 46273 |
| YP_009126024.1 | NC_026605_p69 | hypothetical protein | phrog_5855 | unknown function | unknown function | 1 | 43304 | 43804 |
| YP_009125969.1 | NC_026605_p14 | major tail protein | phrog_476 | major tail protein | tail | 1 | 8874 | 9872 |
| YP_009125960.1 | NC_026605_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4892 | 5257 |
| YP_009126017.1 | NC_026605_p62 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 39826 | 40836 |
| YP_009125983.1 | NC_026605_p28 | hypothetical protein | phrog_443 | holin | lysis | 1 | 25165 | 25413 |
| YP_009125965.1 | NC_026605_p10 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 7320 | 7673 |
| YP_009125968.1 | NC_026605_p13 | head-to-tail connector complex protein | phrog_813 | head-tail adaptor | connector | 1 | 8345 | 8782 |
| YP_009125997.1 | NC_026605_p42 | hypothetical protein | phrog_5559 | unknown function | unknown function | 1 | 30997 | 31176 |
| YP_009125956.1 | NC_026605_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 55 | 444 |
| YP_009125998.1 | NC_026605_p43 | hypothetical protein | phrog_5806 | unknown function | unknown function | 1 | 31173 | 31304 |
| YP_009126012.1 | NC_026605_p57 | DNA methylase | phrog_2060 | DNA methyltransferase | other | 1 | 38149 | 38589 |
| YP_009125970.1 | NC_026605_p15 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9986 | 10904 |
| YP_009126000.1 | NC_026605_p45 | hypothetical protein | phrog_4702 | unknown function | unknown function | 1 | 31384 | 31536 |
| YP_009125988.1 | NC_026605_p33 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 27629 | 27865 |
| YP_009125980.1 | NC_026605_p25 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 22801 | 22974 |
| YP_009126025.1 | NC_026605_p70 | hypothetical protein | phrog_7429 | unknown function | unknown function | 1 | 43880 | 44092 |
| YP_009126019.1 | NC_026605_p64 | hypothetical protein | phrog_7254 | unknown function | unknown function | 1 | 41360 | 41599 |
| YP_009126018.1 | NC_026605_p63 | hypothetical protein | phrog_3599 | unknown function | unknown function | 1 | 40833 | 41363 |
| YP_009126007.1 | NC_026605_p52 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 35583 | 35861 |
| YP_009125964.1 | NC_026605_p9 | head-to-tail connector complex protein | phrog_6553 | head closure Hc1 | connector | 1 | 6954 | 7304 |
| YP_009126030.1 | NC_026605_p75 | hypothetical protein | phrog_18286 | unknown function | unknown function | 1 | 45231 | 45419 |
| YP_009125984.1 | NC_026605_p29 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 25410 | 25769 |
| YP_009126031.1 | NC_026605_p76 | hypothetical protein | phrog_6617 | unknown function | unknown function | 1 | 45416 | 45673 |
| YP_009125976.1 | NC_026605_p21 | minor tail protein | phrog_3493 | minor tail protein | tail | 1 | 18963 | 21224 |
| YP_009125977.1 | NC_026605_p22 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 21221 | 22261 |
| YP_009125971.1 | NC_026605_p16 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9986 | 10585 |
| YP_009125978.1 | NC_026605_p23 | hypothetical protein | phrog_6374 | unknown function | unknown function | 1 | 22276 | 22425 |
| YP_009126016.1 | NC_026605_p61 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 39664 | 39822 |
| YP_009125959.1 | NC_026605_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3551 | 4888 |
| YP_009125979.1 | NC_026605_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22442 | 22804 |
| YP_009125962.1 | NC_026605_p7 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 6238 | 6588 |
| YP_009126014.1 | NC_026605_p59 | hypothetical protein | phrog_5921 | unknown function | unknown function | 1 | 39172 | 39318 |
| YP_009126003.1 | NC_026605_p48 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 33448 | 33786 |
| YP_009126028.1 | NC_026605_p73 | hypothetical protein | phrog_10254 | unknown function | unknown function | 1 | 44649 | 44840 |
| YP_009125987.1 | NC_026605_p32 | DNA binding domain protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 27399 | 27632 |
| YP_009126034.1 | NC_026605_p79 | hypothetical protein | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46278 | 46661 |
| YP_009126015.1 | NC_026605_p60 | hypothetical protein | phrog_11096 | unknown function | unknown function | 1 | 39419 | 39691 |
| YP_009126021.1 | NC_026605_p66 | hypothetical protein | phrog_18047 | unknown function | unknown function | 1 | 42545 | 42790 |
| YP_009126009.1 | NC_026605_p54 | hypothetical protein | phrog_25269 | unknown function | unknown function | 1 | 37044 | 37832 |
| YP_009126032.1 | NC_026605_p77 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 45670 | 46038 |
| YP_009125958.1 | NC_026605_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 2106 | 3560 |
| YP_009125990.1 | NC_026605_p35 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 28725 | 29024 |
| YP_009126001.1 | NC_026605_p46 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31533 | 32462 |
| YP_009125986.1 | NC_026605_p31 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 26800 | 27270 |
| YP_009125994.1 | NC_026605_p39 | hypothetical protein | phrog_4656 | unknown function | unknown function | 1 | 30226 | 30459 |
| YP_009126006.1 | NC_026605_p51 | hypothetical protein | phrog_6109 | unknown function | unknown function | 1 | 35344 | 35586 |
| YP_009125996.1 | NC_026605_p41 | hypothetical protein | phrog_5803 | unknown function | unknown function | 1 | 30728 | 31000 |
| YP_009126013.1 | NC_026605_p58 | HTH binding domain protein | phrog_7170 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 38586 | 39179 |
| YP_009126022.1 | NC_026605_p67 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 42795 | 43049 |
| YP_009125966.1 | NC_026605_p11 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 7666 | 7935 |
| YP_009125992.1 | NC_026605_p37 | hypothetical protein | phrog_5015 | unknown function | unknown function | 1 | 29266 | 29661 |
| YP_009126027.1 | NC_026605_p72 | hypothetical protein | phrog_4550 | unknown function | unknown function | 1 | 44479 | 44652 |
| YP_009125981.1 | NC_026605_p26 | lysin A | phrog_6707 | endolysin | lysis | 1 | 23045 | 23980 |
| YP_009125991.1 | NC_026605_p36 | hypothetical protein | phrog_9041 | unknown function | unknown function | 1 | 29021 | 29269 |
| YP_009125989.1 | NC_026605_p34 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 27862 | 28728 |
| YP_009125973.1 | NC_026605_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14565 | 16310 |
| YP_009126008.1 | NC_026605_p53 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 35858 | 37051 |
| YP_009126020.1 | NC_026605_p65 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 41622 | 42524 |
| YP_009125961.1 | NC_026605_p6 | capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5294 | 6238 |
| YP_009126010.1 | NC_026605_p55 | hypothetical protein | phrog_7789 | unknown function | unknown function | 1 | 37832 | 37921 |
| YP_009126002.1 | NC_026605_p47 | RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32459 | 33451 |
| YP_009125995.1 | NC_026605_p40 | hypothetical protein | phrog_4981 | unknown function | unknown function | 1 | 30456 | 30731 |