Genomic map of Paracoccus phage vB_PmaS_IMEP1 (NC_026608)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_026608
Definition
Paracoccus phage vB_PmaS_IMEP1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
42093
Host Name
Paracoccus marcusii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
56.36
Number of singletons
13
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009126416.1 NC_026608_p26 hypothetical protein phrog_18992 unknown function unknown function 1 18130 18402
YP_009126434.1 NC_026608_p44 major tail tube protein phrog_290 minor tail protein tail 1 30058 31593
YP_009126408.1 NC_026608_p18 MazG family pyrophosphatase phrog_229 MazG-like pyrophosphatase other 1 14288 14713
YP_009126410.1 NC_026608_p20 Vsr endonuclease phrog_824 unknown function unknown function 1 15447 15959
YP_009126426.1 NC_026608_p36 portal protein phrog_145 portal protein head and packaging 1 23896 25371
YP_009126425.1 NC_026608_p35 terminase large subunit phrog_2 terminase large subunit head and packaging 1 22266 23885
YP_009126417.1 NC_026608_p27 hypothetical protein phrog_26036 unknown function unknown function 1 18406 18633
YP_009126415.1 NC_026608_p25 CzcR-like response regulator singleton unknown function unknown function 1 17314 18114
YP_009126438.1 NC_026608_p48 tail tape-measure protein phrog_25241 tail length tape measure protein tail 1 32857 35208
YP_009126422.1 NC_026608_p32 hypothetical protein singleton unknown function unknown function 1 20894 21157
YP_009126399.1 NC_026608_p9 ATPase AAA phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 7390 8070
YP_009126395.1 NC_026608_p5 superfamily II helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 3562 5184
YP_009126391.1 NC_026608_p1 ribonuclease III phrog_15388 unknown function unknown function 1 1 4
YP_009126391.1 NC_026608_p1 ribonuclease III phrog_15388 unknown function unknown function 1 41021 42093
YP_009126392.1 NC_026608_p2 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 1 2016
YP_009126403.1 NC_026608_p13 hypothetical protein singleton unknown function unknown function 1 11775 12566
YP_009126407.1 NC_026608_p17 hypothetical protein singleton unknown function unknown function 1 14059 14301
YP_009126402.1 NC_026608_p12 primase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism 1 9160 11574
YP_009126414.1 NC_026608_p24 hypothetical protein singleton unknown function unknown function 1 16987 17262
YP_009126437.1 NC_026608_p47 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 32417 32860
YP_009126418.1 NC_026608_p28 hypothetical protein phrog_7597 unknown function unknown function 1 18694 19344
YP_009126419.1 NC_026608_p29 hypothetical protein singleton unknown function unknown function 1 19459 19830
YP_009126423.1 NC_026608_p33 hypothetical protein phrog_6664 unknown function unknown function 1 21420 21773
YP_009126427.1 NC_026608_p37 head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 25371 26408
YP_009126421.1 NC_026608_p31 hypothetical protein phrog_1356 holin lysis 1 20665 20901
YP_009126405.1 NC_026608_p15 hypothetical protein singleton unknown function unknown function 1 13489 13761
YP_009126404.1 NC_026608_p14 hypothetical protein singleton unknown function unknown function 1 13150 13452
YP_009126393.1 NC_026608_p3 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 2018 3028
YP_009126430.1 NC_026608_p40 hypothetical protein singleton unknown function unknown function 1 28248 28694
YP_009126398.1 NC_026608_p8 hypothetical protein phrog_6015 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 6639 7367
YP_009126435.1 NC_026608_p45 tail protein phrog_313 Tail assembly chaperone tail 1 31651 32094
YP_009126432.1 NC_026608_p42 head-tail joining protein phrog_161 head closure Hc1 connector 1 29186 29578
YP_009126401.1 NC_026608_p11 hypothetical protein phrog_2480 unknown function unknown function -1 8364 8786
YP_009126396.1 NC_026608_p6 exonuclease phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 5194 6168
YP_009126420.1 NC_026608_p30 endolysin phrog_17001 endolysin lysis 1 19841 20653
YP_009126424.1 NC_026608_p34 hypothetical protein phrog_5334 terminase small subunit head and packaging 1 21830 22294
YP_009126406.1 NC_026608_p16 hypothetical protein singleton unknown function unknown function 1 13761 14069
YP_009126412.1 NC_026608_p22 hypothetical protein phrog_8293 unknown function unknown function 1 16408 16638
YP_009126411.1 NC_026608_p21 hypothetical protein phrog_10444 unknown function unknown function 1 15969 16208
YP_009126397.1 NC_026608_p7 hypothetical protein phrog_1934 unknown function unknown function -1 6077 6580
YP_009126394.1 NC_026608_p4 HD-domain protein singleton unknown function unknown function -1 3015 3320
YP_009126439.1 NC_026608_p49 glycoside hydrolase family protein phrog_2913 glycoside hydrolase other 1 35211 35840
YP_009126409.1 NC_026608_p19 cysteine synthase phrog_11040 unknown function unknown function 1 14944 15282
YP_009126413.1 NC_026608_p23 hypothetical protein singleton unknown function unknown function 1 16626 16994
YP_009126400.1 NC_026608_p10 hypothetical protein singleton unknown function unknown function 1 8069 8308
YP_009126442.1 NC_026608_p52 gene transfer agent-like protein phrog_4271 tail protein tail 1 37149 41024
YP_009126431.1 NC_026608_p41 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 28707 29183
YP_009126433.1 NC_026608_p43 minor tail protein phrog_179 tail terminator connector 1 29578 30042
YP_009126441.1 NC_026608_p51 cell wall peptidase phrog_329 minor tail protein tail 1 36717 37148
YP_009126429.1 NC_026608_p39 major capsid protein phrog_247 major head protein head and packaging 1 27210 28169
YP_009126428.1 NC_026608_p38 scaffold protein phrog_206 head scaffolding protein head and packaging 1 26451 27191
YP_009126440.1 NC_026608_p50 hypothetical protein phrog_778 tail assembly protein tail 1 35843 36727
YP_009126436.1 NC_026608_p46 tail chaperonin phrog_3817 tail chaperonin tail 1 32100 32417