| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026608 |
Definition |
Paracoccus phage vB_PmaS_IMEP1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
42093 |
Host Name |
Paracoccus marcusii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
56.36 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009126416.1 | NC_026608_p26 | hypothetical protein | phrog_18992 | unknown function | unknown function | 1 | 18130 | 18402 |
| YP_009126434.1 | NC_026608_p44 | major tail tube protein | phrog_290 | minor tail protein | tail | 1 | 30058 | 31593 |
| YP_009126408.1 | NC_026608_p18 | MazG family pyrophosphatase | phrog_229 | MazG-like pyrophosphatase | other | 1 | 14288 | 14713 |
| YP_009126410.1 | NC_026608_p20 | Vsr endonuclease | phrog_824 | unknown function | unknown function | 1 | 15447 | 15959 |
| YP_009126426.1 | NC_026608_p36 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 23896 | 25371 |
| YP_009126425.1 | NC_026608_p35 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 22266 | 23885 |
| YP_009126417.1 | NC_026608_p27 | hypothetical protein | phrog_26036 | unknown function | unknown function | 1 | 18406 | 18633 |
| YP_009126415.1 | NC_026608_p25 | CzcR-like response regulator | singleton | unknown function | unknown function | 1 | 17314 | 18114 |
| YP_009126438.1 | NC_026608_p48 | tail tape-measure protein | phrog_25241 | tail length tape measure protein | tail | 1 | 32857 | 35208 |
| YP_009126422.1 | NC_026608_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20894 | 21157 |
| YP_009126399.1 | NC_026608_p9 | ATPase AAA | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 7390 | 8070 |
| YP_009126395.1 | NC_026608_p5 | superfamily II helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 3562 | 5184 |
| YP_009126391.1 | NC_026608_p1 | ribonuclease III | phrog_15388 | unknown function | unknown function | 1 | 1 | 4 |
| YP_009126391.1 | NC_026608_p1 | ribonuclease III | phrog_15388 | unknown function | unknown function | 1 | 41021 | 42093 |
| YP_009126392.1 | NC_026608_p2 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 1 | 2016 |
| YP_009126403.1 | NC_026608_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11775 | 12566 |
| YP_009126407.1 | NC_026608_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14059 | 14301 |
| YP_009126402.1 | NC_026608_p12 | primase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 9160 | 11574 |
| YP_009126414.1 | NC_026608_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16987 | 17262 |
| YP_009126437.1 | NC_026608_p47 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 32417 | 32860 |
| YP_009126418.1 | NC_026608_p28 | hypothetical protein | phrog_7597 | unknown function | unknown function | 1 | 18694 | 19344 |
| YP_009126419.1 | NC_026608_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19459 | 19830 |
| YP_009126423.1 | NC_026608_p33 | hypothetical protein | phrog_6664 | unknown function | unknown function | 1 | 21420 | 21773 |
| YP_009126427.1 | NC_026608_p37 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 25371 | 26408 |
| YP_009126421.1 | NC_026608_p31 | hypothetical protein | phrog_1356 | holin | lysis | 1 | 20665 | 20901 |
| YP_009126405.1 | NC_026608_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13489 | 13761 |
| YP_009126404.1 | NC_026608_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13150 | 13452 |
| YP_009126393.1 | NC_026608_p3 | DNA polymerase III beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 2018 | 3028 |
| YP_009126430.1 | NC_026608_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28248 | 28694 |
| YP_009126398.1 | NC_026608_p8 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 6639 | 7367 |
| YP_009126435.1 | NC_026608_p45 | tail protein | phrog_313 | Tail assembly chaperone | tail | 1 | 31651 | 32094 |
| YP_009126432.1 | NC_026608_p42 | head-tail joining protein | phrog_161 | head closure Hc1 | connector | 1 | 29186 | 29578 |
| YP_009126401.1 | NC_026608_p11 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 8364 | 8786 |
| YP_009126396.1 | NC_026608_p6 | exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 5194 | 6168 |
| YP_009126420.1 | NC_026608_p30 | endolysin | phrog_17001 | endolysin | lysis | 1 | 19841 | 20653 |
| YP_009126424.1 | NC_026608_p34 | hypothetical protein | phrog_5334 | terminase small subunit | head and packaging | 1 | 21830 | 22294 |
| YP_009126406.1 | NC_026608_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13761 | 14069 |
| YP_009126412.1 | NC_026608_p22 | hypothetical protein | phrog_8293 | unknown function | unknown function | 1 | 16408 | 16638 |
| YP_009126411.1 | NC_026608_p21 | hypothetical protein | phrog_10444 | unknown function | unknown function | 1 | 15969 | 16208 |
| YP_009126397.1 | NC_026608_p7 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 6077 | 6580 |
| YP_009126394.1 | NC_026608_p4 | HD-domain protein | singleton | unknown function | unknown function | -1 | 3015 | 3320 |
| YP_009126439.1 | NC_026608_p49 | glycoside hydrolase family protein | phrog_2913 | glycoside hydrolase | other | 1 | 35211 | 35840 |
| YP_009126409.1 | NC_026608_p19 | cysteine synthase | phrog_11040 | unknown function | unknown function | 1 | 14944 | 15282 |
| YP_009126413.1 | NC_026608_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16626 | 16994 |
| YP_009126400.1 | NC_026608_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8069 | 8308 |
| YP_009126442.1 | NC_026608_p52 | gene transfer agent-like protein | phrog_4271 | tail protein | tail | 1 | 37149 | 41024 |
| YP_009126431.1 | NC_026608_p41 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 28707 | 29183 |
| YP_009126433.1 | NC_026608_p43 | minor tail protein | phrog_179 | tail terminator | connector | 1 | 29578 | 30042 |
| YP_009126441.1 | NC_026608_p51 | cell wall peptidase | phrog_329 | minor tail protein | tail | 1 | 36717 | 37148 |
| YP_009126429.1 | NC_026608_p39 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 27210 | 28169 |
| YP_009126428.1 | NC_026608_p38 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 26451 | 27191 |
| YP_009126440.1 | NC_026608_p50 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 35843 | 36727 |
| YP_009126436.1 | NC_026608_p46 | tail chaperonin | phrog_3817 | tail chaperonin | tail | 1 | 32100 | 32417 |