Genomic map of Lactobacillus phage Ldl1 (NC_026609)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_026609
Definition
Lactobacillus phage Ldl1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tybeckvirinae; Lidleunavirus; Lactobacillus virus Ldl1.
DB of origin
REFSEQ
Length
74806
Host Name
Lactobacillus delbrueckii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
37.76
Number of singletons
26
Number of paralogs
11

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009126487.1 NC_026609_p45 single-stranded-DNA-specific exonuclease phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 48355 50211
YP_009126512.1 NC_026609_p70 hypothetical protein phrog_2367 unknown function unknown function -1 65460 66386
YP_009126463.1 NC_026609_p21 major tail protein phrog_88 major tail protein tail 1 14535 15182
YP_009126443.1 NC_026609_p1 hypothetical protein singleton unknown function unknown function 1 101 547
YP_009126459.1 NC_026609_p17 hypothetical protein singleton unknown function unknown function 1 12884 13195
YP_009126498.1 NC_026609_p56 ATP binding cassette transporter singleton unknown function unknown function -1 57436 58524
YP_009126517.1 NC_026609_p75 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 69221 69670
YP_009126454.1 NC_026609_p12 terminase large subunit phrog_9 terminase large subunit head and packaging 1 6372 8132
YP_009126462.1 NC_026609_p20 tail protein phrog_1217 tail protein tail 1 14060 14515
YP_009126518.1 NC_026609_p76 antirepressor protein phrog_63 anti-repressor Ant transcription regulation -1 69762 70514
YP_009126464.1 NC_026609_p22 hypothetical protein phrog_1346 tail protein tail 1 15271 15657
YP_009126505.1 NC_026609_p63 hypothetical protein singleton unknown function unknown function -1 60394 60666
YP_009126510.1 NC_026609_p68 ATP GTP binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 63217 64305
YP_009126470.1 NC_026609_p28 hypothetical protein phrog_14733 unknown function unknown function 1 34208 34675
YP_009126497.1 NC_026609_p55 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 56656 57297
YP_009126444.1 NC_026609_p2 DNA repair protein family protein singleton unknown function unknown function 1 706 1077
YP_009126472.1 NC_026609_p30 hypothetical protein phrog_16410 unknown function unknown function 1 34930 35283
YP_009126490.1 NC_026609_p48 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 51889 53481
YP_009126466.1 NC_026609_p24 distal tail protein phrog_202 distal tail protein Dit tail 1 23888 26443
YP_009126457.1 NC_026609_p15 major capsid protein phrog_10 major head protein head and packaging 1 10770 12041
YP_009126478.1 NC_026609_p36 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 38865 39710
YP_009126446.1 NC_026609_p4 hypothetical protein phrog_22203 unknown function unknown function 1 1436 1765
YP_009126484.1 NC_026609_p42 extracellular transglycosylase phrog_4602 transglycosylase other -1 46218 46874
YP_009126502.1 NC_026609_p60 nucleoside deoxyribosyltransferase phrog_7995 nucleoside deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 59234 59701
YP_009126448.1 NC_026609_p6 hypothetical protein singleton unknown function unknown function 1 3419 3805
YP_009126500.1 NC_026609_p58 hypothetical protein singleton unknown function unknown function -1 58800 58970
YP_009126447.1 NC_026609_p5 hypothetical protein singleton unknown function unknown function 1 3220 3339
YP_009126458.1 NC_026609_p16 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 12200 12835
YP_009126468.1 NC_026609_p26 adsorption protein singleton unknown function unknown function 1 28955 30541
YP_009126476.1 NC_026609_p34 lysin phrog_291 endolysin lysis 1 36477 37733
YP_009126455.1 NC_026609_p13 hk97 family portal protein phrog_12 portal protein head and packaging 1 8145 9626
YP_009126521.1 NC_026609_p79 antirepressor protein phrog_130 anti-repressor Ant transcription regulation -1 71330 72112
YP_009126507.1 NC_026609_p65 hypothetical protein singleton unknown function unknown function -1 60805 61011
YP_009126449.1 NC_026609_p7 hypothetical protein singleton unknown function unknown function 1 3811 3996
YP_009126469.1 NC_026609_p27 adsorption protein phrog_1899 unknown function unknown function 1 30519 34190
YP_009126465.1 NC_026609_p23 tape measure protein phrog_167 tail length tape measure protein tail 1 15936 23819
YP_009126513.1 NC_026609_p71 hypothetical protein singleton unknown function unknown function -1 67596 67802
YP_009126509.1 NC_026609_p67 antirepressor protein phrog_63 anti-repressor Ant transcription regulation -1 62480 63139
YP_009126520.1 NC_026609_p78 antirepressor protein singleton unknown function unknown function -1 71206 71313
YP_009126477.1 NC_026609_p35 recombinase/integrase phrog_1 integrase integration and excision 1 37811 38788
YP_009126515.1 NC_026609_p73 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 68011 68874
YP_009126480.1 NC_026609_p38 hypothetical protein singleton unknown function unknown function -1 43721 43918
YP_009126445.1 NC_026609_p3 hypothetical protein phrog_22203 unknown function unknown function 1 1092 1418
YP_009126486.1 NC_026609_p44 growth inhibitor phrog_1936 MazF-like growth inhibitor moron, auxiliary metabolic gene and host takeover -1 48029 48355
YP_009126473.1 NC_026609_p31 hypothetical protein phrog_4325 holin lysis 1 35296 35712
YP_009126451.1 NC_026609_p9 hypothetical protein phrog_13887 unknown function unknown function 1 4168 4938
YP_009126511.1 NC_026609_p69 antirepressor protein phrog_130 anti-repressor Ant transcription regulation -1 64406 65185
YP_009126504.1 NC_026609_p62 hypothetical protein singleton unknown function unknown function -1 60091 60342
YP_009126491.1 NC_026609_p49 hypothetical protein phrog_4680 unknown function unknown function -1 53481 53834
YP_009126450.1 NC_026609_p8 hypothetical protein singleton unknown function unknown function 1 4011 4166
YP_009126493.1 NC_026609_p51 deoxynucleoside kinase phrog_761 thymidylate kinase other -1 54332 55051
YP_009126503.1 NC_026609_p61 hypothetical protein singleton unknown function unknown function -1 59758 60081
YP_009126506.1 NC_026609_p64 hypothetical protein singleton unknown function unknown function -1 60692 60805
YP_009126482.1 NC_026609_p40 hypothetical protein singleton unknown function unknown function -1 44775 45431
YP_009126499.1 NC_026609_p57 hypothetical protein singleton unknown function unknown function -1 58627 58800
YP_009126479.1 NC_026609_p37 DNA polymerase phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 39832 43569
YP_009126481.1 NC_026609_p39 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 44015 44677
YP_009126485.1 NC_026609_p43 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 47269 47898
YP_009126467.1 NC_026609_p25 baseplate protein tal-like protein phrog_4798 tail protein tail 1 26466 28958
YP_009126488.1 NC_026609_p46 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 50208 51236
YP_009126519.1 NC_026609_p77 antirepressor protein phrog_130 anti-repressor Ant transcription regulation -1 70516 71175
YP_009126494.1 NC_026609_p52 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other -1 55063 55815
YP_009126501.1 NC_026609_p59 hypothetical protein singleton unknown function unknown function -1 58974 59234
YP_009126495.1 NC_026609_p53 phosphatidylglycerophosphatase A phrog_12432 phosphatidylglycerophosphatase A other -1 55815 56315
YP_009126508.1 NC_026609_p66 DNA polymerase phrog_284 exonuclease DNA, RNA and nucleotide metabolism -1 61112 62380
YP_009126514.1 NC_026609_p72 hypothetical protein singleton unknown function unknown function -1 67805 68014
YP_009126452.1 NC_026609_p10 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 5439 5852
YP_009126489.1 NC_026609_p47 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 51249 51866
YP_009126475.1 NC_026609_p33 holin phrog_2609 holin lysis 1 36029 36463
YP_009126483.1 NC_026609_p41 thymidine kinase phrog_592 thymidine kinase other -1 45415 46197
YP_009126456.1 NC_026609_p14 prohead protease phrog_13042 major head protein head and packaging 1 9616 10770
YP_009126461.1 NC_026609_p19 head-tail adaptor phrog_5 tail completion or Neck1 protein connector 1 13571 14056
YP_009126492.1 NC_026609_p50 hypothetical protein phrog_22203 unknown function unknown function -1 53931 54308
YP_009126453.1 NC_026609_p11 terminase small subunit phrog_83 terminase small subunit head and packaging 1 5978 6385
YP_009126471.1 NC_026609_p29 hypothetical protein singleton unknown function unknown function 1 34686 34844
YP_009126516.1 NC_026609_p74 hypothetical protein singleton unknown function unknown function -1 68871 69224
YP_009126460.1 NC_026609_p18 head-tail joining protein phrog_25 head closure Hc1 connector 1 13198 13578
YP_009126496.1 NC_026609_p54 hypothetical protein singleton unknown function unknown function -1 56329 56550
YP_009126474.1 NC_026609_p32 hypothetical protein singleton unknown function unknown function 1 35734 36045