| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026609 |
Definition |
Lactobacillus phage Ldl1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tybeckvirinae; Lidleunavirus; Lactobacillus virus Ldl1. |
DB of origin |
REFSEQ |
Length |
74806 |
Host Name |
Lactobacillus delbrueckii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
37.76 |
Number of singletons |
26 |
Number of paralogs |
11 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009126487.1 | NC_026609_p45 | single-stranded-DNA-specific exonuclease | phrog_2484 | RecJ-like ssDNA exonuclease | DNA, RNA and nucleotide metabolism | -1 | 48355 | 50211 |
| YP_009126512.1 | NC_026609_p70 | hypothetical protein | phrog_2367 | unknown function | unknown function | -1 | 65460 | 66386 |
| YP_009126463.1 | NC_026609_p21 | major tail protein | phrog_88 | major tail protein | tail | 1 | 14535 | 15182 |
| YP_009126443.1 | NC_026609_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 101 | 547 |
| YP_009126459.1 | NC_026609_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12884 | 13195 |
| YP_009126498.1 | NC_026609_p56 | ATP binding cassette transporter | singleton | unknown function | unknown function | -1 | 57436 | 58524 |
| YP_009126517.1 | NC_026609_p75 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 69221 | 69670 |
| YP_009126454.1 | NC_026609_p12 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 6372 | 8132 |
| YP_009126462.1 | NC_026609_p20 | tail protein | phrog_1217 | tail protein | tail | 1 | 14060 | 14515 |
| YP_009126518.1 | NC_026609_p76 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 69762 | 70514 |
| YP_009126464.1 | NC_026609_p22 | hypothetical protein | phrog_1346 | tail protein | tail | 1 | 15271 | 15657 |
| YP_009126505.1 | NC_026609_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60394 | 60666 |
| YP_009126510.1 | NC_026609_p68 | ATP GTP binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 63217 | 64305 |
| YP_009126470.1 | NC_026609_p28 | hypothetical protein | phrog_14733 | unknown function | unknown function | 1 | 34208 | 34675 |
| YP_009126497.1 | NC_026609_p55 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 56656 | 57297 |
| YP_009126444.1 | NC_026609_p2 | DNA repair protein family protein | singleton | unknown function | unknown function | 1 | 706 | 1077 |
| YP_009126472.1 | NC_026609_p30 | hypothetical protein | phrog_16410 | unknown function | unknown function | 1 | 34930 | 35283 |
| YP_009126490.1 | NC_026609_p48 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 51889 | 53481 |
| YP_009126466.1 | NC_026609_p24 | distal tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 23888 | 26443 |
| YP_009126457.1 | NC_026609_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 10770 | 12041 |
| YP_009126478.1 | NC_026609_p36 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 38865 | 39710 |
| YP_009126446.1 | NC_026609_p4 | hypothetical protein | phrog_22203 | unknown function | unknown function | 1 | 1436 | 1765 |
| YP_009126484.1 | NC_026609_p42 | extracellular transglycosylase | phrog_4602 | transglycosylase | other | -1 | 46218 | 46874 |
| YP_009126502.1 | NC_026609_p60 | nucleoside deoxyribosyltransferase | phrog_7995 | nucleoside deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 59234 | 59701 |
| YP_009126448.1 | NC_026609_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3419 | 3805 |
| YP_009126500.1 | NC_026609_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58800 | 58970 |
| YP_009126447.1 | NC_026609_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3220 | 3339 |
| YP_009126458.1 | NC_026609_p16 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12200 | 12835 |
| YP_009126468.1 | NC_026609_p26 | adsorption protein | singleton | unknown function | unknown function | 1 | 28955 | 30541 |
| YP_009126476.1 | NC_026609_p34 | lysin | phrog_291 | endolysin | lysis | 1 | 36477 | 37733 |
| YP_009126455.1 | NC_026609_p13 | hk97 family portal protein | phrog_12 | portal protein | head and packaging | 1 | 8145 | 9626 |
| YP_009126521.1 | NC_026609_p79 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | -1 | 71330 | 72112 |
| YP_009126507.1 | NC_026609_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60805 | 61011 |
| YP_009126449.1 | NC_026609_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3811 | 3996 |
| YP_009126469.1 | NC_026609_p27 | adsorption protein | phrog_1899 | unknown function | unknown function | 1 | 30519 | 34190 |
| YP_009126465.1 | NC_026609_p23 | tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 15936 | 23819 |
| YP_009126513.1 | NC_026609_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67596 | 67802 |
| YP_009126509.1 | NC_026609_p67 | antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 62480 | 63139 |
| YP_009126520.1 | NC_026609_p78 | antirepressor protein | singleton | unknown function | unknown function | -1 | 71206 | 71313 |
| YP_009126477.1 | NC_026609_p35 | recombinase/integrase | phrog_1 | integrase | integration and excision | 1 | 37811 | 38788 |
| YP_009126515.1 | NC_026609_p73 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 68011 | 68874 |
| YP_009126480.1 | NC_026609_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43721 | 43918 |
| YP_009126445.1 | NC_026609_p3 | hypothetical protein | phrog_22203 | unknown function | unknown function | 1 | 1092 | 1418 |
| YP_009126486.1 | NC_026609_p44 | growth inhibitor | phrog_1936 | MazF-like growth inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 48029 | 48355 |
| YP_009126473.1 | NC_026609_p31 | hypothetical protein | phrog_4325 | holin | lysis | 1 | 35296 | 35712 |
| YP_009126451.1 | NC_026609_p9 | hypothetical protein | phrog_13887 | unknown function | unknown function | 1 | 4168 | 4938 |
| YP_009126511.1 | NC_026609_p69 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | -1 | 64406 | 65185 |
| YP_009126504.1 | NC_026609_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60091 | 60342 |
| YP_009126491.1 | NC_026609_p49 | hypothetical protein | phrog_4680 | unknown function | unknown function | -1 | 53481 | 53834 |
| YP_009126450.1 | NC_026609_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4011 | 4166 |
| YP_009126493.1 | NC_026609_p51 | deoxynucleoside kinase | phrog_761 | thymidylate kinase | other | -1 | 54332 | 55051 |
| YP_009126503.1 | NC_026609_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59758 | 60081 |
| YP_009126506.1 | NC_026609_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60692 | 60805 |
| YP_009126482.1 | NC_026609_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44775 | 45431 |
| YP_009126499.1 | NC_026609_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58627 | 58800 |
| YP_009126479.1 | NC_026609_p37 | DNA polymerase | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 39832 | 43569 |
| YP_009126481.1 | NC_026609_p39 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 44015 | 44677 |
| YP_009126485.1 | NC_026609_p43 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 47269 | 47898 |
| YP_009126467.1 | NC_026609_p25 | baseplate protein tal-like protein | phrog_4798 | tail protein | tail | 1 | 26466 | 28958 |
| YP_009126488.1 | NC_026609_p46 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 50208 | 51236 |
| YP_009126519.1 | NC_026609_p77 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | -1 | 70516 | 71175 |
| YP_009126494.1 | NC_026609_p52 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 55063 | 55815 |
| YP_009126501.1 | NC_026609_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58974 | 59234 |
| YP_009126495.1 | NC_026609_p53 | phosphatidylglycerophosphatase A | phrog_12432 | phosphatidylglycerophosphatase A | other | -1 | 55815 | 56315 |
| YP_009126508.1 | NC_026609_p66 | DNA polymerase | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 61112 | 62380 |
| YP_009126514.1 | NC_026609_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67805 | 68014 |
| YP_009126452.1 | NC_026609_p10 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 5439 | 5852 |
| YP_009126489.1 | NC_026609_p47 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 51249 | 51866 |
| YP_009126475.1 | NC_026609_p33 | holin | phrog_2609 | holin | lysis | 1 | 36029 | 36463 |
| YP_009126483.1 | NC_026609_p41 | thymidine kinase | phrog_592 | thymidine kinase | other | -1 | 45415 | 46197 |
| YP_009126456.1 | NC_026609_p14 | prohead protease | phrog_13042 | major head protein | head and packaging | 1 | 9616 | 10770 |
| YP_009126461.1 | NC_026609_p19 | head-tail adaptor | phrog_5 | tail completion or Neck1 protein | connector | 1 | 13571 | 14056 |
| YP_009126492.1 | NC_026609_p50 | hypothetical protein | phrog_22203 | unknown function | unknown function | -1 | 53931 | 54308 |
| YP_009126453.1 | NC_026609_p11 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 5978 | 6385 |
| YP_009126471.1 | NC_026609_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34686 | 34844 |
| YP_009126516.1 | NC_026609_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 68871 | 69224 |
| YP_009126460.1 | NC_026609_p18 | head-tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 13198 | 13578 |
| YP_009126496.1 | NC_026609_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56329 | 56550 |
| YP_009126474.1 | NC_026609_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35734 | 36045 |