| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_026610 |
Definition |
Vibrio phage VpKK5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
56637 |
Host Name |
Vibrio parahaemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
51.31 |
Number of singletons |
37 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009126569.1 | NC_026610_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4263 | 4463 |
| YP_009126584.1 | NC_026610_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16164 | 16694 |
| YP_009126572.1 | NC_026610_p15 | primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 5369 | 7684 |
| YP_009126565.1 | NC_026610_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2690 | 3346 |
| YP_009126858.1 | NC_026610_p24 | DNA/RNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 14087 | 15865 |
| YP_009126549.1 | NC_026610_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53640 | 53882 |
| YP_009126593.1 | NC_026610_p35 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 22902 | 24938 |
| YP_009126538.1 | NC_026610_p62 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | -1 | 48869 | 49360 |
| YP_009126531.1 | NC_026610_p56 | coat protein | phrog_247 | major head protein | head and packaging | -1 | 41655 | 42692 |
| YP_009126589.1 | NC_026610_p31 | 6-pyruvoyl tetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 19569 | 20051 |
| YP_009126575.1 | NC_026610_p18 | hypothetical protein | phrog_5534 | unknown function | unknown function | 1 | 8567 | 9589 |
| YP_009126547.1 | NC_026610_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52906 | 53070 |
| YP_009126602.1 | NC_026610_p44 | hypothetical protein | phrog_687 | structural protein | head and packaging | -1 | 31980 | 32969 |
| YP_009126582.2 | NC_026610_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36185 | 36322 |
| YP_009126600.1 | NC_026610_p42 | tail assembly protein | phrog_778 | tail assembly protein | tail | -1 | 29559 | 30326 |
| YP_009126596.1 | NC_026610_p38 | hypothetical protein | phrog_6168 | unknown function | unknown function | 1 | 25684 | 25911 |
| YP_009126543.1 | NC_026610_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51203 | 51874 |
| YP_009126545.1 | NC_026610_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52237 | 52599 |
| YP_009126535.1 | NC_026610_p60 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 46451 | 48001 |
| YP_009126859.1 | NC_026610_p25 | hypothetical protein | phrog_23504 | unknown function | unknown function | 1 | 15831 | 16046 |
| YP_009126597.1 | NC_026610_p39 | tail assembly protein | phrog_1101 | tail protein | tail | -1 | 25999 | 29169 |
| YP_009126576.1 | NC_026610_p19 | ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9654 | 10388 |
| YP_009126586.1 | NC_026610_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17454 | 17849 |
| YP_009126529.1 | NC_026610_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39688 | 41025 |
| YP_009126544.1 | NC_026610_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51871 | 52164 |
| YP_009126525.1 | NC_026610_p50 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 38004 | 38420 |
| YP_009126524.1 | NC_026610_p49 | tail subunit | phrog_290 | minor tail protein | tail | -1 | 36964 | 37899 |
| YP_009126594.1 | NC_026610_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25017 | 25499 |
| YP_009126534.1 | NC_026610_p59 | structural phage protein | phrog_145 | portal protein | head and packaging | -1 | 44886 | 46403 |
| YP_009126598.1 | NC_026610_p40 | tail assembly protein | phrog_1196 | tail assembly chaperone | tail | -1 | 29142 | 29339 |
| YP_009126542.1 | NC_026610_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50928 | 51197 |
| YP_009126526.1 | NC_026610_p51 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 38410 | 38820 |
| YP_009126527.1 | NC_026610_p52 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 38820 | 39179 |
| YP_009126567.1 | NC_026610_p10 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3642 | 3833 |
| YP_009126558.1 | NC_026610_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 425 | 805 |
| YP_009126564.1 | NC_026610_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2384 | 2608 |
| YP_009126523.1 | NC_026610_p48 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 36442 | 36939 |
| YP_009126570.1 | NC_026610_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4473 | 4649 |
| YP_009126592.1 | NC_026610_p34 | DNA polymerase beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 21943 | 22902 |
| YP_009126559.1 | NC_026610_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 802 | 978 |
| YP_009126590.1 | NC_026610_p32 | GTP cyclohydrolase | phrog_2197 | GTP cyclohydrolase | other | 1 | 20048 | 20950 |
| YP_009126860.1 | NC_026610_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48103 | 48552 |
| YP_009126551.1 | NC_026610_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54284 | 54442 |
| YP_009126540.1 | NC_026610_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50063 | 50530 |
| YP_009126579.1 | NC_026610_p22 | hypothetical protein | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | 1 | 12244 | 12801 |
| YP_009126556.1 | NC_026610_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56070 | 56360 |
| YP_009126857.1 | NC_026610_p6 | hypothetical protein | phrog_26965 | unknown function | unknown function | -1 | 1796 | 2218 |
| YP_009126530.1 | NC_026610_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41037 | 41582 |
| YP_009126580.1 | NC_026610_p23 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 12801 | 13712 |
| YP_009126539.1 | NC_026610_p63 | terminase small subunit | phrog_5334 | terminase small subunit | head and packaging | -1 | 49434 | 49943 |
| YP_009126560.1 | NC_026610_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 962 | 1129 |
| YP_009126574.1 | NC_026610_p17 | hypothetical protein | phrog_2480 | unknown function | unknown function | 1 | 8074 | 8502 |
| YP_009126578.1 | NC_026610_p21 | hypothetical protein | phrog_4899 | unknown function | unknown function | 1 | 11348 | 11836 |
| YP_009126532.1 | NC_026610_p57 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 42834 | 43628 |
| YP_009126548.1 | NC_026610_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53341 | 53649 |
| YP_009126546.1 | NC_026610_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52599 | 52919 |
| YP_009126601.1 | NC_026610_p43 | tail assembly protein | phrog_1082 | tail assembly protein | tail | -1 | 30326 | 31978 |
| YP_009126568.1 | NC_026610_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3844 | 4125 |
| YP_009126587.1 | NC_026610_p29 | orgamic radical activating enzyme | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 17983 | 18687 |
| YP_009126555.1 | NC_026610_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55588 | 56073 |
| YP_009126588.1 | NC_026610_p30 | 7-cyano-7-deazaguanine synthase | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 18693 | 19412 |
| YP_009126603.1 | NC_026610_p45 | virion protein | phrog_687 | structural protein | head and packaging | -1 | 32969 | 33799 |
| YP_009126561.1 | NC_026610_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1126 | 1365 |
| YP_009126541.1 | NC_026610_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50520 | 50909 |
| YP_009126533.1 | NC_026610_p58 | minor head protein-like protein | phrog_241 | head morphogenesis | head and packaging | -1 | 43701 | 44882 |
| YP_009126553.1 | NC_026610_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54895 | 55200 |
| YP_009126585.1 | NC_026610_p27 | hypothetical protein | phrog_7864 | unknown function | unknown function | 1 | 16756 | 17328 |
| YP_009126573.1 | NC_026610_p16 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7685 | 7897 |
| YP_009126522.1 | NC_026610_p46 | tail tape measure protein | phrog_9483 | tail length tape measure protein | tail | -1 | 33799 | 36192 |
| YP_009126599.1 | NC_026610_p41 | tail assembly protein | phrog_1180 | tail assembly chaperone | tail | -1 | 29341 | 29559 |
| YP_009126566.1 | NC_026610_p9 | hypothetical protein | phrog_37277 | unknown function | unknown function | -1 | 3336 | 3632 |
| YP_009126552.1 | NC_026610_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54432 | 54908 |
| YP_009126550.1 | NC_026610_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53936 | 54199 |
| YP_009126571.1 | NC_026610_p14 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 4639 | 5082 |
| YP_009126591.1 | NC_026610_p33 | queuosine tRNA-ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 21020 | 21943 |
| YP_009126554.1 | NC_026610_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55200 | 55382 |
| YP_009126595.1 | NC_026610_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25487 | 25687 |
| YP_009126577.1 | NC_026610_p20 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 10457 | 11287 |
| YP_009126562.1 | NC_026610_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1358 | 1621 |
| YP_009126528.1 | NC_026610_p53 | structural phage protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 39176 | 39685 |