Genomic map of Vibrio phage VpKK5 (NC_026610)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_026610
Definition
Vibrio phage VpKK5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
56637
Host Name
Vibrio parahaemolyticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
80
%GC
51.31
Number of singletons
37
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009126569.1 NC_026610_p12 hypothetical protein singleton unknown function unknown function -1 4263 4463
YP_009126584.1 NC_026610_p26 hypothetical protein singleton unknown function unknown function 1 16164 16694
YP_009126572.1 NC_026610_p15 primase/helicase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism -1 5369 7684
YP_009126565.1 NC_026610_p8 hypothetical protein singleton unknown function unknown function -1 2690 3346
YP_009126858.1 NC_026610_p24 DNA/RNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 14087 15865
YP_009126549.1 NC_026610_p73 hypothetical protein singleton unknown function unknown function -1 53640 53882
YP_009126593.1 NC_026610_p35 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 22902 24938
YP_009126538.1 NC_026610_p62 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis -1 48869 49360
YP_009126531.1 NC_026610_p56 coat protein phrog_247 major head protein head and packaging -1 41655 42692
YP_009126589.1 NC_026610_p31 6-pyruvoyl tetrahydropterin synthase phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover 1 19569 20051
YP_009126575.1 NC_026610_p18 hypothetical protein phrog_5534 unknown function unknown function 1 8567 9589
YP_009126547.1 NC_026610_p71 hypothetical protein singleton unknown function unknown function -1 52906 53070
YP_009126602.1 NC_026610_p44 hypothetical protein phrog_687 structural protein head and packaging -1 31980 32969
YP_009126582.2 NC_026610_p47 hypothetical protein singleton unknown function unknown function -1 36185 36322
YP_009126600.1 NC_026610_p42 tail assembly protein phrog_778 tail assembly protein tail -1 29559 30326
YP_009126596.1 NC_026610_p38 hypothetical protein phrog_6168 unknown function unknown function 1 25684 25911
YP_009126543.1 NC_026610_p67 hypothetical protein singleton unknown function unknown function -1 51203 51874
YP_009126545.1 NC_026610_p69 hypothetical protein singleton unknown function unknown function -1 52237 52599
YP_009126535.1 NC_026610_p60 terminase large subunit phrog_2 terminase large subunit head and packaging -1 46451 48001
YP_009126859.1 NC_026610_p25 hypothetical protein phrog_23504 unknown function unknown function 1 15831 16046
YP_009126597.1 NC_026610_p39 tail assembly protein phrog_1101 tail protein tail -1 25999 29169
YP_009126576.1 NC_026610_p19 ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9654 10388
YP_009126586.1 NC_026610_p28 hypothetical protein singleton unknown function unknown function 1 17454 17849
YP_009126529.1 NC_026610_p54 hypothetical protein singleton unknown function unknown function -1 39688 41025
YP_009126544.1 NC_026610_p68 hypothetical protein singleton unknown function unknown function -1 51871 52164
YP_009126525.1 NC_026610_p50 hypothetical protein phrog_179 tail terminator connector -1 38004 38420
YP_009126524.1 NC_026610_p49 tail subunit phrog_290 minor tail protein tail -1 36964 37899
YP_009126594.1 NC_026610_p36 hypothetical protein singleton unknown function unknown function 1 25017 25499
YP_009126534.1 NC_026610_p59 structural phage protein phrog_145 portal protein head and packaging -1 44886 46403
YP_009126598.1 NC_026610_p40 tail assembly protein phrog_1196 tail assembly chaperone tail -1 29142 29339
YP_009126542.1 NC_026610_p66 hypothetical protein singleton unknown function unknown function -1 50928 51197
YP_009126526.1 NC_026610_p51 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 38410 38820
YP_009126527.1 NC_026610_p52 hypothetical protein phrog_161 head closure Hc1 connector -1 38820 39179
YP_009126567.1 NC_026610_p10 hypothetical protein singleton unknown function unknown function -1 3642 3833
YP_009126558.1 NC_026610_p1 hypothetical protein singleton unknown function unknown function -1 425 805
YP_009126564.1 NC_026610_p7 hypothetical protein singleton unknown function unknown function -1 2384 2608
YP_009126523.1 NC_026610_p48 hypothetical protein phrog_313 Tail assembly chaperone tail -1 36442 36939
YP_009126570.1 NC_026610_p13 hypothetical protein singleton unknown function unknown function -1 4473 4649
YP_009126592.1 NC_026610_p34 DNA polymerase beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 21943 22902
YP_009126559.1 NC_026610_p2 hypothetical protein singleton unknown function unknown function -1 802 978
YP_009126590.1 NC_026610_p32 GTP cyclohydrolase phrog_2197 GTP cyclohydrolase other 1 20048 20950
YP_009126860.1 NC_026610_p61 hypothetical protein singleton unknown function unknown function -1 48103 48552
YP_009126551.1 NC_026610_p75 hypothetical protein singleton unknown function unknown function -1 54284 54442
YP_009126540.1 NC_026610_p64 hypothetical protein singleton unknown function unknown function -1 50063 50530
YP_009126579.1 NC_026610_p22 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other 1 12244 12801
YP_009126556.1 NC_026610_p80 hypothetical protein singleton unknown function unknown function -1 56070 56360
YP_009126857.1 NC_026610_p6 hypothetical protein phrog_26965 unknown function unknown function -1 1796 2218
YP_009126530.1 NC_026610_p55 hypothetical protein singleton unknown function unknown function -1 41037 41582
YP_009126580.1 NC_026610_p23 hypothetical protein phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism 1 12801 13712
YP_009126539.1 NC_026610_p63 terminase small subunit phrog_5334 terminase small subunit head and packaging -1 49434 49943
YP_009126560.1 NC_026610_p3 hypothetical protein singleton unknown function unknown function -1 962 1129
YP_009126574.1 NC_026610_p17 hypothetical protein phrog_2480 unknown function unknown function 1 8074 8502
YP_009126578.1 NC_026610_p21 hypothetical protein phrog_4899 unknown function unknown function 1 11348 11836
YP_009126532.1 NC_026610_p57 hypothetical protein phrog_206 head scaffolding protein head and packaging -1 42834 43628
YP_009126548.1 NC_026610_p72 hypothetical protein singleton unknown function unknown function -1 53341 53649
YP_009126546.1 NC_026610_p70 hypothetical protein singleton unknown function unknown function -1 52599 52919
YP_009126601.1 NC_026610_p43 tail assembly protein phrog_1082 tail assembly protein tail -1 30326 31978
YP_009126568.1 NC_026610_p11 hypothetical protein singleton unknown function unknown function -1 3844 4125
YP_009126587.1 NC_026610_p29 orgamic radical activating enzyme phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover 1 17983 18687
YP_009126555.1 NC_026610_p79 hypothetical protein singleton unknown function unknown function -1 55588 56073
YP_009126588.1 NC_026610_p30 7-cyano-7-deazaguanine synthase phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover 1 18693 19412
YP_009126603.1 NC_026610_p45 virion protein phrog_687 structural protein head and packaging -1 32969 33799
YP_009126561.1 NC_026610_p4 hypothetical protein singleton unknown function unknown function -1 1126 1365
YP_009126541.1 NC_026610_p65 hypothetical protein singleton unknown function unknown function -1 50520 50909
YP_009126533.1 NC_026610_p58 minor head protein-like protein phrog_241 head morphogenesis head and packaging -1 43701 44882
YP_009126553.1 NC_026610_p77 hypothetical protein singleton unknown function unknown function -1 54895 55200
YP_009126585.1 NC_026610_p27 hypothetical protein phrog_7864 unknown function unknown function 1 16756 17328
YP_009126573.1 NC_026610_p16 hypothetical protein singleton unknown function unknown function -1 7685 7897
YP_009126522.1 NC_026610_p46 tail tape measure protein phrog_9483 tail length tape measure protein tail -1 33799 36192
YP_009126599.1 NC_026610_p41 tail assembly protein phrog_1180 tail assembly chaperone tail -1 29341 29559
YP_009126566.1 NC_026610_p9 hypothetical protein phrog_37277 unknown function unknown function -1 3336 3632
YP_009126552.1 NC_026610_p76 hypothetical protein singleton unknown function unknown function -1 54432 54908
YP_009126550.1 NC_026610_p74 hypothetical protein singleton unknown function unknown function -1 53936 54199
YP_009126571.1 NC_026610_p14 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 4639 5082
YP_009126591.1 NC_026610_p33 queuosine tRNA-ribosyltransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 21020 21943
YP_009126554.1 NC_026610_p78 hypothetical protein singleton unknown function unknown function -1 55200 55382
YP_009126595.1 NC_026610_p37 hypothetical protein singleton unknown function unknown function 1 25487 25687
YP_009126577.1 NC_026610_p20 hypothetical protein phrog_6015 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 10457 11287
YP_009126562.1 NC_026610_p5 hypothetical protein singleton unknown function unknown function -1 1358 1621
YP_009126528.1 NC_026610_p53 structural phage protein phrog_477 head-tail adaptor Ad1 connector -1 39176 39685