| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027118 |
Definition |
Vibrio phage phiVC8, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus. |
DB of origin |
REFSEQ |
Length |
39422 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
50.8 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009140165.1 | NC_027118_p36 | hypothetical protein | phrog_8941 | unknown function | unknown function | -1 | 32538 | 33230 |
| YP_009140159.1 | NC_027118_p30 | hypothetical protein | phrog_2340 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28330 | 28680 |
| YP_009140157.1 | NC_027118_p28 | Integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 24154 | 26442 |
| YP_009140172.1 | NC_027118_p43 | hypothetical protein | phrog_9197 | unknown function | unknown function | -1 | 36543 | 36836 |
| YP_009140176.1 | NC_027118_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38093 | 38788 |
| YP_009140158.1 | NC_027118_p29 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26432 | 28333 |
| YP_009140153.1 | NC_027118_p24 | hypothetical protein | phrog_10658 | unknown function | unknown function | -1 | 22150 | 22308 |
| YP_009140135.1 | NC_027118_p6 | hypothetical protein | phrog_5977 | unknown function | unknown function | 1 | 4326 | 4583 |
| YP_009140139.1 | NC_027118_p10 | hypothetical protein | phrog_8869 | unknown function | unknown function | 1 | 6926 | 7774 |
| YP_009140133.1 | NC_027118_p4 | head to tail connecting protein | phrog_332 | head-tail adaptor | connector | 1 | 2443 | 4086 |
| YP_009140145.1 | NC_027118_p16 | hypothetical protein | phrog_9290 | unknown function | unknown function | 1 | 12951 | 13349 |
| YP_009140164.1 | NC_027118_p35 | hypothetical protein | phrog_9940 | unknown function | unknown function | -1 | 32188 | 32538 |
| YP_009140162.1 | NC_027118_p33 | hypothetical protein | phrog_2378 | unknown function | unknown function | -1 | 30119 | 30586 |
| YP_009140175.1 | NC_027118_p46 | hypothetical protein | phrog_8878 | unknown function | unknown function | -1 | 37495 | 38094 |
| YP_009140151.1 | NC_027118_p22 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 21350 | 21646 |
| YP_009140155.1 | NC_027118_p26 | hypothetical protein | phrog_9860 | unknown function | unknown function | -1 | 22819 | 23079 |
| YP_009140131.1 | NC_027118_p2 | terminase small subunit | phrog_8823 | terminase small subunit | head and packaging | 1 | 128 | 739 |
| YP_009140152.1 | NC_027118_p23 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 21723 | 22160 |
| YP_009140171.1 | NC_027118_p42 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | -1 | 35985 | 36437 |
| YP_009140148.1 | NC_027118_p19 | structural protein | phrog_684 | virion structural protein | head and packaging | 1 | 16604 | 18952 |
| YP_009140174.1 | NC_027118_p45 | hypothetical protein | phrog_9346 | unknown function | unknown function | -1 | 37245 | 37490 |
| YP_009140147.1 | NC_027118_p18 | hypothetical protein | phrog_8824 | unknown function | unknown function | 1 | 15430 | 16602 |
| YP_009140134.1 | NC_027118_p5 | hypothetical protein | phrog_9429 | unknown function | unknown function | 1 | 4086 | 4313 |
| YP_009140149.1 | NC_027118_p20 | tail fiber | phrog_4440 | tail fiber protein | tail | 1 | 18956 | 19984 |
| YP_009140132.1 | NC_027118_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 726 | 2432 |
| YP_009140169.1 | NC_027118_p40 | hypothetical protein | phrog_9688 | unknown function | unknown function | -1 | 34621 | 35421 |
| YP_009140166.1 | NC_027118_p37 | hypothetical protein | phrog_4049 | unknown function | unknown function | -1 | 33381 | 33845 |
| YP_009140170.1 | NC_027118_p41 | hypothetical protein | phrog_9060 | unknown function | unknown function | -1 | 35490 | 35975 |
| YP_009140173.1 | NC_027118_p44 | hypothetical protein | phrog_9131 | unknown function | unknown function | -1 | 36848 | 37138 |
| YP_009140146.1 | NC_027118_p17 | structural protein | phrog_9153 | unknown function | unknown function | 1 | 13346 | 15430 |
| YP_009140167.1 | NC_027118_p38 | hypothetical protein | phrog_3392 | unknown function | unknown function | -1 | 33842 | 34252 |
| YP_009140160.1 | NC_027118_p31 | ssDNA binding protein | phrog_7364 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28677 | 29192 |
| YP_009140163.1 | NC_027118_p34 | superfamily II DNA/RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 30649 | 32118 |
| YP_009140136.1 | NC_027118_p7 | hypothetical protein | phrog_3742 | unknown function | unknown function | 1 | 4552 | 5439 |
| YP_009140154.1 | NC_027118_p25 | metal dependent phosphohydrolase | phrog_7076 | dATP triphosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 22305 | 22817 |
| YP_009140130.1 | NC_027118_p1 | hypothetical protein | phrog_9836 | unknown function | unknown function | 1 | 1 | 222 |
| YP_009140168.1 | NC_027118_p39 | hypothetical protein | phrog_9382 | unknown function | unknown function | -1 | 34254 | 34613 |
| YP_009140142.1 | NC_027118_p13 | hypothetical protein | phrog_8910 | unknown function | unknown function | 1 | 8604 | 8906 |
| YP_009140161.1 | NC_027118_p32 | hypothetical protein | phrog_2402 | unknown function | unknown function | -1 | 29253 | 30068 |
| YP_009140140.1 | NC_027118_p11 | hypothetical protein | phrog_8135 | unknown function | unknown function | 1 | 7771 | 8136 |
| YP_009140141.1 | NC_027118_p12 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 8138 | 8611 |
| YP_009140156.1 | NC_027118_p27 | adenylosuccinate synthetase | phrog_1211 | 2-aminooxy adenylosuccinate synthetase | DNA, RNA and nucleotide metabolism | -1 | 23081 | 24112 |
| YP_009140143.1 | NC_027118_p14 | tail protein | phrog_9239 | tail tubular protein | tail | 1 | 8930 | 11155 |
| YP_009140137.1 | NC_027118_p8 | structural protein | phrog_3437 | major head protein | head and packaging | 1 | 5607 | 6575 |
| YP_009140144.1 | NC_027118_p15 | structural protein | phrog_376 | tail protein | tail | 1 | 11164 | 12948 |
| YP_009140150.1 | NC_027118_p21 | outer capsid protein | phrog_8700 | unknown function | unknown function | 1 | 20009 | 21322 |
| YP_009140138.1 | NC_027118_p9 | hypothetical protein | phrog_8977 | unknown function | unknown function | 1 | 6642 | 6911 |
| YP_009140177.1 | NC_027118_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38663 | 39028 |