| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027120 |
Definition |
Lactococcus phage 1358, complete sequence. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
36892 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
43 |
%GC |
51.03 |
Number of singletons |
19 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009140419.1 | NC_027120_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31664 | 32071 |
| YP_009140426.1 | NC_027120_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33345 | 33569 |
| YP_009140429.1 | NC_027120_p42 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34667 | 35008 |
| YP_009140415.1 | NC_027120_p28 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 25011 | 26972 |
| YP_009140413.1 | NC_027120_p26 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 22903 | 24123 |
| YP_009140404.1 | NC_027120_p17 | phage structural protein | phrog_13564 | minor tail protein | tail | 1 | 13987 | 15045 |
| YP_009140390.1 | NC_027120_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1944 | 3587 |
| YP_009140417.1 | NC_027120_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29756 | 31153 |
| YP_009140398.1 | NC_027120_p11 | phage structural protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8535 | 8987 |
| YP_009140393.1 | NC_027120_p6 | major head protein | phrog_422 | major head protein | head and packaging | 1 | 5635 | 6528 |
| YP_009140406.1 | NC_027120_p19 | phage structural protein | singleton | unknown function | unknown function | 1 | 16694 | 18484 |
| YP_009140407.1 | NC_027120_p20 | phage structural protein | singleton | unknown function | unknown function | 1 | 18503 | 19684 |
| YP_009140397.1 | NC_027120_p10 | head-tail adaptator | phrog_1059 | head-tail adaptor | connector | 1 | 8185 | 8535 |
| YP_009140430.1 | NC_027120_p43 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 35005 | 36738 |
| YP_009140416.1 | NC_027120_p29 | helicase | phrog_256 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 27051 | 29600 |
| YP_009140396.1 | NC_027120_p9 | phage structural protein | phrog_1236 | head protein | head and packaging | 1 | 7586 | 8176 |
| YP_009140420.1 | NC_027120_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32056 | 32319 |
| YP_009140394.1 | NC_027120_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6588 | 7157 |
| YP_009140414.1 | NC_027120_p27 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 24136 | 25008 |
| YP_009140428.1 | NC_027120_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33865 | 34677 |
| YP_009140412.1 | NC_027120_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22127 | 22903 |
| YP_009140399.1 | NC_027120_p12 | phage structural protein | phrog_957 | head protein | head and packaging | 1 | 8984 | 9424 |
| YP_009140389.1 | NC_027120_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 565 | 1929 |
| YP_009140422.1 | NC_027120_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32492 | 32686 |
| YP_009140409.1 | NC_027120_p22 | endolysin | phrog_1309 | endolysin | lysis | 1 | 20162 | 20863 |
| YP_009140425.1 | NC_027120_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33152 | 33343 |
| YP_009140418.1 | NC_027120_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31426 | 31554 |
| YP_009140400.1 | NC_027120_p13 | phage structural protein | phrog_885 | major tail protein | tail | 1 | 9421 | 10902 |
| YP_009140423.1 | NC_027120_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32683 | 32925 |
| YP_009140421.1 | NC_027120_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32316 | 32492 |
| YP_009140411.1 | NC_027120_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21759 | 22034 |
| YP_009140391.1 | NC_027120_p4 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 3927 | 4865 |
| YP_009140388.1 | NC_027120_p1 | terminase small subunit | singleton | unknown function | unknown function | 1 | 18 | 623 |
| YP_009140392.1 | NC_027120_p5 | phage structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4970 | 5602 |
| YP_009140402.1 | NC_027120_p15 | hypothetical protein | phrog_1294 | peptide methionine sulfoxide reductase | other | 1 | 11658 | 11918 |
| YP_009140401.1 | NC_027120_p14 | hypothetical protein | phrog_1021 | unknown function | unknown function | 1 | 10987 | 11598 |
| YP_009140410.1 | NC_027120_p23 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 21538 | 21762 |
| YP_009140424.1 | NC_027120_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32925 | 33152 |
| YP_009140408.1 | NC_027120_p21 | holin | phrog_199 | holin | lysis | 1 | 19750 | 20196 |
| YP_009140405.1 | NC_027120_p18 | phage structural protein | phrog_7064 | tail protein | tail | 1 | 15061 | 16683 |
| YP_009140403.1 | NC_027120_p16 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11915 | 13987 |
| YP_009140395.1 | NC_027120_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7175 | 7495 |
| YP_009140427.1 | NC_027120_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33566 | 33868 |