| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027296 |
Definition |
Rhizobium phage RHEph06, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Kleczkowskavirus; unclassified Kleczkowskavirus. |
DB of origin |
REFSEQ |
Length |
53721 |
Host Name |
Rhizobium etli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
82 |
%GC |
56.42 |
Number of singletons |
40 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009145894.1 | NC_027296_p35 | hypothetical protein | phrog_587 | structural protein | head and packaging | 1 | 23822 | 24622 |
| YP_009145910.1 | NC_027296_p51 | hypothetical protein | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 34832 | 35734 |
| YP_009145866.1 | NC_027296_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2780 | 3088 |
| YP_009145863.1 | NC_027296_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1736 | 2011 |
| YP_009145926.1 | NC_027296_p67 | DNA/RNA helicase protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 42426 | 44108 |
| YP_009145860.1 | NC_027296_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 160 | 360 |
| YP_009145895.1 | NC_027296_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24635 | 25540 |
| YP_009145917.1 | NC_027296_p58 | hypothetical protein | phrog_23810 | unknown function | unknown function | -1 | 38971 | 39435 |
| YP_009145891.1 | NC_027296_p32 | baseplate assembly protein | phrog_11 | baseplate spike | tail | 1 | 21923 | 22585 |
| YP_009145877.1 | NC_027296_p18 | hypothetical protein | phrog_563 | virion structural protein | head and packaging | 1 | 12405 | 12875 |
| YP_009145887.1 | NC_027296_p28 | tail protein | phrog_973 | tail length tape measure protein | tail | 1 | 18358 | 20094 |
| YP_009145929.1 | NC_027296_p70 | hypothetical protein | phrog_4899 | unknown function | unknown function | -1 | 45596 | 46117 |
| YP_009145874.1 | NC_027296_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10082 | 10240 |
| YP_009145906.1 | NC_027296_p47 | DNA polymerase protein | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 31414 | 33465 |
| YP_009145938.1 | NC_027296_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51832 | 52065 |
| YP_009145875.1 | NC_027296_p16 | hypothetical protein | phrog_4046 | unknown function | unknown function | 1 | 10301 | 11122 |
| YP_009145862.1 | NC_027296_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1005 | 1739 |
| YP_009145879.1 | NC_027296_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13901 | 14287 |
| YP_009145919.1 | NC_027296_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39797 | 40063 |
| YP_009145936.1 | NC_027296_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51267 | 51602 |
| YP_009145883.1 | NC_027296_p24 | hypothetical protein | phrog_1973 | unknown function | unknown function | 1 | 15483 | 16001 |
| YP_009145941.1 | NC_027296_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52899 | 53261 |
| YP_009145903.1 | NC_027296_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29099 | 29716 |
| YP_009145861.1 | NC_027296_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 374 | 865 |
| YP_009145871.1 | NC_027296_p12 | head morphogenesis protein | phrog_324 | head morphogenesis | head and packaging | 1 | 7291 | 8115 |
| YP_009145876.1 | NC_027296_p17 | head protein | phrog_530 | head maturation protease | head and packaging | 1 | 11230 | 12351 |
| YP_009145907.1 | NC_027296_p48 | DNA polymerase protein, beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 33468 | 34442 |
| YP_009145897.1 | NC_027296_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26606 | 26971 |
| YP_009145886.1 | NC_027296_p27 | hypothetical protein | phrog_1613 | tail assembly chaperone | tail | 1 | 17702 | 18139 |
| YP_009145884.1 | NC_027296_p25 | structural protein | phrog_205 | tail sheath | tail | 1 | 16036 | 17193 |
| YP_009145934.1 | NC_027296_p75 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 48283 | 48720 |
| YP_009145935.1 | NC_027296_p76 | DNA primase protein | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 48824 | 51265 |
| YP_009145900.1 | NC_027296_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27986 | 28402 |
| YP_009145888.1 | NC_027296_p29 | hypothetical protein | phrog_817 | tail fiber protein | tail | 1 | 20094 | 20717 |
| YP_009145890.1 | NC_027296_p31 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 21054 | 21926 |
| YP_009145878.1 | NC_027296_p19 | capsid protein | phrog_264 | major head protein | head and packaging | 1 | 12909 | 13835 |
| YP_009145914.1 | NC_027296_p55 | 6-pyruvoyl tetrahydropterin synthetase protein | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 36793 | 37290 |
| YP_009145940.1 | NC_027296_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52681 | 52899 |
| YP_009145912.1 | NC_027296_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35952 | 36185 |
| YP_009145865.1 | NC_027296_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2463 | 2744 |
| YP_009145930.1 | NC_027296_p71 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 46231 | 46875 |
| YP_009145901.1 | NC_027296_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28454 | 28657 |
| YP_009145923.1 | NC_027296_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41373 | 41897 |
| YP_009145899.1 | NC_027296_p40 | hypothetical protein | phrog_14936 | unknown function | unknown function | 1 | 27672 | 27989 |
| YP_009145928.1 | NC_027296_p69 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44487 | 45530 |
| YP_009145909.1 | NC_027296_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34527 | 34820 |
| YP_009145922.1 | NC_027296_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40658 | 41260 |
| YP_009145916.1 | NC_027296_p57 | queuosine biosynthesis protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 38139 | 38876 |
| YP_009145869.1 | NC_027296_p10 | terminase protein large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 4032 | 5438 |
| YP_009145898.1 | NC_027296_p39 | lysozyme protein | phrog_181 | endolysin | lysis | 1 | 26985 | 27662 |
| YP_009145872.1 | NC_027296_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8146 | 8439 |
| YP_009145896.1 | NC_027296_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25540 | 26601 |
| YP_009145927.1 | NC_027296_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44119 | 44349 |
| YP_009145911.1 | NC_027296_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35735 | 35950 |
| YP_009145868.1 | NC_027296_p9 | ribonuclease H protein | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 3294 | 3878 |
| YP_009145924.1 | NC_027296_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41910 | 42119 |
| YP_009145864.1 | NC_027296_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2065 | 2475 |
| YP_009145880.1 | NC_027296_p21 | structural protein | phrog_302 | virion structural protein | head and packaging | 1 | 14300 | 14686 |
| YP_009145885.1 | NC_027296_p26 | structural protein | phrog_280 | virion structural protein | head and packaging | 1 | 17223 | 17657 |
| YP_009145921.1 | NC_027296_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40383 | 40526 |
| YP_009145881.1 | NC_027296_p22 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 14688 | 15161 |
| YP_009145904.1 | NC_027296_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30032 | 30733 |
| YP_009145873.1 | NC_027296_p14 | hypothetical protein | phrog_8480 | lysophospholipase L1-like esterase | other | 1 | 8439 | 10085 |
| YP_009145918.1 | NC_027296_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39497 | 39793 |
| YP_009145905.1 | NC_027296_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30925 | 31386 |
| YP_009145882.1 | NC_027296_p23 | hypothetical protein | phrog_939 | head protein | head and packaging | 1 | 15154 | 15486 |
| YP_009145867.1 | NC_027296_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3085 | 3297 |
| YP_009145908.1 | NC_027296_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34435 | 34551 |
| YP_009145920.1 | NC_027296_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40149 | 40364 |
| YP_009145892.1 | NC_027296_p33 | structural protein | phrog_120 | baseplate wedge subunit | tail | 1 | 22582 | 22944 |
| YP_009145889.1 | NC_027296_p30 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 20714 | 21043 |
| YP_009145937.1 | NC_027296_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51599 | 51832 |
| YP_009145893.1 | NC_027296_p34 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 22941 | 23825 |
| YP_009145931.1 | NC_027296_p72 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 46987 | 47688 |
| YP_009145902.1 | NC_027296_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28809 | 29099 |
| YP_009145932.1 | NC_027296_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47685 | 48062 |
| YP_009145915.1 | NC_027296_p56 | queuosine biosynthesis protein | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 37290 | 38126 |
| YP_009145870.1 | NC_027296_p11 | head protein | phrog_146 | portal protein | head and packaging | 1 | 5447 | 7294 |
| YP_009145913.1 | NC_027296_p54 | GTP cyclohydrolase I protein | phrog_2197 | GTP cyclohydrolase | other | -1 | 36237 | 36800 |
| YP_009145939.1 | NC_027296_p80 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 52068 | 52604 |
| YP_009145933.1 | NC_027296_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48108 | 48290 |
| YP_009145925.1 | NC_027296_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42179 | 42433 |