Genomic map of Salmonella virus Stitch (NC_027297)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027297
Definition
Salmonella phage Stitch, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Epseptimavirus.
DB of origin
REFSEQ
Length
123475
Host Name
Salmonella typhimurium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
179
%GC
40.3
Number of singletons
0
Number of paralogs
16

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009145987.1 NC_027297_p46 hypothetical protein phrog_5468 unknown function unknown function -1 24617 24964
YP_009146093.1 NC_027297_p152 hypothetical protein phrog_442 head-tail adaptor connector -1 103445 103957
YP_009146095.1 NC_027297_p154 prohead protease phrog_80 head maturation protease head and packaging -1 105411 106043
YP_009145943.1 NC_027297_p2 hypothetical protein phrog_4576 unknown function unknown function -1 934 1326
YP_009145959.1 NC_027297_p18 hypothetical protein phrog_5799 unknown function unknown function -1 12280 12465
YP_009145979.1 NC_027297_p38 hypothetical protein phrog_5944 unknown function unknown function -1 20004 20420
YP_009146020.1 NC_027297_p79 nicotinamide-nucleotide adenylyltransferase phrog_3462 nicotinamide-nucleotide adenylyltransferase moron, auxiliary metabolic gene and host takeover -1 38669 39724
YP_009146066.1 NC_027297_p125 transcription factor phrog_323 transcriptional regulator, D5-like transcription regulation 1 69958 70725
YP_009145978.1 NC_027297_p37 hypothetical protein phrog_4328 unknown function unknown function -1 19518 19928
YP_009146008.1 NC_027297_p67 hypothetical protein phrog_6221 unknown function unknown function -1 32990 33154
YP_009146021.1 NC_027297_p80 hypothetical protein phrog_8119 unknown function unknown function 1 39990 40976
YP_009146101.1 NC_027297_p160 receptor-binding protein phrog_4815 receptor binding tail protein tail -1 110104 111885
YP_009145988.1 NC_027297_p47 hypothetical protein phrog_5265 unknown function unknown function -1 25081 25365
YP_009146056.1 NC_027297_p115 replication origin binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 62497 65286
YP_009145982.1 NC_027297_p41 ATP-dependent Clp protease phrog_1827 ATP-dependent protease other -1 21719 22318
YP_009145962.1 NC_027297_p21 hypothetical protein phrog_4905 unknown function unknown function -1 13472 13822
YP_009145983.1 NC_027297_p42 deoxynucleoside-5'-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 22331 23083
YP_009146045.1 NC_027297_p104 phosphate starvation inducible protein phrog_170 PhoH-like phosphate starvation-inducible other -1 55639 56391
YP_009145975.1 NC_027297_p34 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 17889 18752
YP_009146075.1 NC_027297_p134 exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 79903 81741
YP_009146032.1 NC_027297_p91 hypothetical protein phrog_4586 unknown function unknown function -1 47471 47683
YP_009146049.1 NC_027297_p108 hypothetical protein phrog_5827 unknown function unknown function 1 59180 59374
YP_009146097.1 NC_027297_p156 portal protein phrog_12 portal protein head and packaging -1 106526 107743
YP_009146009.1 NC_027297_p68 hypothetical protein phrog_5473 unknown function unknown function -1 34282 34467
YP_009146083.1 NC_027297_p142 tail protein phrog_3890 straight fibre tail protein tail -1 89603 91660
YP_009146026.1 NC_027297_p85 hypothetical protein phrog_5077 unknown function unknown function -1 44342 44512
YP_009146082.1 NC_027297_p141 tail protein phrog_1084 unknown function unknown function -1 89175 89597
YP_009145958.1 NC_027297_p17 hypothetical protein phrog_5271 unknown function unknown function -1 11669 12280
YP_009146091.1 NC_027297_p150 hypothetical protein phrog_3907 tail terminator connector -1 102189 102674
YP_009146104.1 NC_027297_p163 hypothetical protein phrog_5851 unknown function unknown function 1 112801 112995
YP_009146024.1 NC_027297_p83 hypothetical protein phrog_11609 unknown function unknown function -1 42701 42901
YP_009145972.1 NC_027297_p31 serine/threonine protein phosphatase phrog_547 phosphoesterase other -1 16725 17315
YP_009146015.1 NC_027297_p74 hypothetical protein phrog_5441 unknown function unknown function -1 36572 36715
YP_009145961.1 NC_027297_p20 hypothetical protein phrog_4605 unknown function unknown function -1 12909 13451
YP_009146051.1 NC_027297_p110 hypothetical protein phrog_5116 unknown function unknown function 1 60203 60385
YP_009146112.1 NC_027297_p171 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 117226 117642
YP_009146004.1 NC_027297_p63 hypothetical protein phrog_15739 unknown function unknown function -1 31307 31525
YP_009145966.1 NC_027297_p25 hypothetical protein phrog_4804 unknown function unknown function -1 14884 15129
YP_009146108.1 NC_027297_p167 hypothetical protein phrog_4576 unknown function unknown function -1 114427 114819
YP_009146054.1 NC_027297_p113 hypothetical protein phrog_2502 unknown function unknown function 1 61047 61475
YP_009146029.1 NC_027297_p88 hypothetical protein phrog_1491 tail fiber protein tail -1 45794 46432
YP_009146059.1 NC_027297_p118 hypothetical protein phrog_643 transcriptional regulator transcription regulation 1 66269 66523
YP_009145967.1 NC_027297_p26 hypothetical protein phrog_4984 unknown function unknown function -1 15126 15407
YP_009146076.1 NC_027297_p135 restriction endonuclease phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 81745 82227
YP_009145981.1 NC_027297_p40 holin phrog_860 holin lysis -1 20906 21562
YP_009145963.1 NC_027297_p22 hypothetical protein phrog_4215 unknown function unknown function -1 13797 14264
YP_009146023.1 NC_027297_p82 hypothetical protein phrog_200 lipoprotein other -1 41745 42689
YP_009146025.1 NC_027297_p84 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 43899 44342
YP_009146078.1 NC_027297_p137 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 83099 83545
YP_009146055.1 NC_027297_p114 hypothetical protein phrog_2502 unknown function unknown function 1 61485 61880
YP_009146006.1 NC_027297_p65 hypothetical protein phrog_13931 unknown function unknown function -1 32431 32574
YP_009145945.1 NC_027297_p4 A1 protein phrog_1745 DNA transfer protein other -1 1675 3339
YP_009146073.1 NC_027297_p132 hypothetical protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 78132 78905
YP_009146061.1 NC_027297_p120 hypothetical protein phrog_3696 unknown function unknown function 1 67078 67374
YP_009145992.1 NC_027297_p51 hypothetical protein phrog_2855 unknown function unknown function -1 26313 26594
YP_009145969.1 NC_027297_p28 hypothetical protein phrog_3880 unknown function unknown function -1 15802 16053
YP_009146001.1 NC_027297_p60 hypothetical protein phrog_24969 unknown function unknown function -1 30163 30324
YP_009145955.1 NC_027297_p14 hypothetical protein phrog_6973 unknown function unknown function 1 8848 9042
YP_009146113.1 NC_027297_p172 hypothetical protein phrog_3747 unknown function unknown function -1 117867 118118
YP_009146010.1 NC_027297_p69 hypothetical protein phrog_7042 unknown function unknown function -1 34723 34914
YP_009146063.1 NC_027297_p122 hypothetical protein phrog_8267 unknown function unknown function 1 67819 68019
YP_009146102.1 NC_027297_p161 receptor-blocking protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 111969 112235
YP_009146012.1 NC_027297_p71 hypothetical protein phrog_5876 unknown function unknown function -1 35186 35458
YP_009146062.1 NC_027297_p121 transcriptional regulator phrog_4053 transcriptional regulator transcription regulation 1 67425 67733
YP_009146027.1 NC_027297_p86 spore cortex-lytic enzyme precursor phrog_938 endolysin lysis -1 44582 45031
YP_009146065.1 NC_027297_p124 NAD-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 69186 69965
YP_009146005.1 NC_027297_p64 hypothetical protein phrog_7572 unknown function unknown function -1 31988 32341
YP_009146090.1 NC_027297_p149 major tail protein phrog_3575 major tail protein tail -1 100753 102162
YP_009145951.1 NC_027297_p10 hypothetical protein phrog_6741 unknown function unknown function 1 7166 7660
YP_009146079.1 NC_027297_p138 hypothetical protein phrog_5592 unknown function unknown function 1 83523 83774
YP_009145946.1 NC_027297_p5 A1 protein precursor phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 3448 3675
YP_009145985.1 NC_027297_p44 i-spanin phrog_739 Rz-like spanin lysis -1 23367 23816
YP_009146028.1 NC_027297_p87 hypothetical protein phrog_1479 unknown function unknown function -1 45037 45354
YP_009145994.1 NC_027297_p53 hypothetical protein phrog_1235 unknown function unknown function -1 27125 27310
YP_009146114.1 NC_027297_p173 hypothetical protein phrog_4718 unknown function unknown function -1 118284 118502
YP_009145984.1 NC_027297_p43 o-spanin phrog_812 Rz-like spanin lysis -1 23083 23436
YP_009145997.1 NC_027297_p56 hypothetical protein phrog_4760 unknown function unknown function -1 28653 28946
YP_009146044.1 NC_027297_p103 hypothetical protein phrog_5357 tail length tape measure protein tail -1 55395 55637
YP_009146100.1 NC_027297_p159 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 109611 110093
YP_009146064.1 NC_027297_p123 NAD-dependent DNA ligase, subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 68012 68983
YP_009146094.1 NC_027297_p153 major capsid protein phrog_10 major head protein head and packaging -1 104017 105393
YP_009145986.1 NC_027297_p45 hypothetical protein phrog_4243 unknown function unknown function -1 23773 24471
YP_009146033.1 NC_027297_p92 hypothetical protein phrog_28965 unknown function unknown function -1 47722 48030
YP_009146099.1 NC_027297_p158 terminase large subunit phrog_2 terminase large subunit head and packaging -1 108295 109611
YP_009146018.1 NC_027297_p77 hypothetical protein phrog_6894 unknown function unknown function -1 37587 37883
YP_009145991.1 NC_027297_p50 hypothetical protein phrog_4821 unknown function unknown function -1 26021 26320
YP_009146035.1 NC_027297_p94 hypothetical protein phrog_4516 unknown function unknown function -1 48261 48776
YP_009145954.1 NC_027297_p13 hypothetical protein phrog_4379 unknown function unknown function 1 8374 8721
YP_009145970.1 NC_027297_p29 hypothetical protein phrog_4979 unknown function unknown function -1 16132 16563
YP_009146115.1 NC_027297_p174 hypothetical protein phrog_4263 unknown function unknown function 1 119594 120595
YP_009146007.1 NC_027297_p66 hypothetical protein phrog_6053 unknown function unknown function -1 32574 32891
YP_009146031.1 NC_027297_p90 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 46739 47440
YP_009146088.1 NC_027297_p147 hypothetical protein phrog_313 Tail assembly chaperone tail -1 99448 99852
YP_009146107.1 NC_027297_p166 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 113604 114338
YP_009146011.1 NC_027297_p70 hypothetical protein phrog_8408 unknown function unknown function -1 34911 35135
YP_009146041.1 NC_027297_p100 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 51158 51688
YP_009145995.1 NC_027297_p54 hypothetical protein phrog_4499 unknown function unknown function -1 27375 27674
YP_009145973.1 NC_027297_p32 hypothetical protein phrog_6073 Rz-like spanin lysis -1 17315 17521
YP_009145949.1 NC_027297_p8 hypothetical protein phrog_4718 unknown function unknown function -1 4791 5009
YP_009146039.1 NC_027297_p98 hypothetical protein phrog_17630 unknown function unknown function -1 49960 50214
YP_009145998.1 NC_027297_p57 hypothetical protein phrog_5919 unknown function unknown function -1 29106 29270
YP_009146042.1 NC_027297_p101 ribonucleoside diphosphate reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 51688 52833
YP_009146017.1 NC_027297_p76 hypothetical protein phrog_6060 anti-termination protein Q-like transcription regulation -1 37156 37341
YP_009146109.1 NC_027297_p168 hypothetical protein phrog_8297 unknown function unknown function -1 114858 115115
YP_009146058.1 NC_027297_p117 helicase phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 65572 66276
YP_009146047.1 NC_027297_p106 hypothetical protein phrog_7953 unknown function unknown function 1 58717 58998
YP_009145976.1 NC_027297_p35 hypothetical protein phrog_6798 unknown function unknown function -1 18752 19132
YP_009145968.1 NC_027297_p27 hypothetical protein phrog_13127 unknown function unknown function -1 15404 15802
YP_009146110.1 NC_027297_p169 A1 protein phrog_1745 DNA transfer protein other -1 115168 116832
YP_009146116.1 NC_027297_p175 hypothetical protein phrog_6741 unknown function unknown function 1 120659 121153
YP_009146036.1 NC_027297_p95 hypothetical protein phrog_4593 unknown function unknown function -1 48860 49138
YP_009145956.1 NC_027297_p15 hypothetical protein phrog_8993 unknown function unknown function -1 10591 11322
YP_009146111.1 NC_027297_p170 A1 protein precursor phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 116941 117168
YP_009145965.1 NC_027297_p24 hypothetical protein phrog_4731 unknown function unknown function -1 14562 14894
YP_009146030.1 NC_027297_p89 hypothetical protein phrog_5252 unknown function unknown function -1 46486 46668
YP_009146070.1 NC_027297_p129 hypothetical protein phrog_4386 unknown function unknown function 1 75790 76287
YP_009146077.1 NC_027297_p136 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 82227 83102
YP_009145989.1 NC_027297_p48 hypothetical protein phrog_5792 unknown function unknown function -1 25362 25655
YP_009145944.1 NC_027297_p3 hypothetical protein phrog_8297 unknown function unknown function -1 1365 1622
YP_009146060.1 NC_027297_p119 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 66631 67041
YP_009145957.1 NC_027297_p16 hypothetical protein phrog_13456 unknown function unknown function -1 11319 11669
YP_009146067.1 NC_027297_p126 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 70814 72280
YP_009146105.1 NC_027297_p164 hypothetical protein phrog_6447 membrane protein moron, auxiliary metabolic gene and host takeover 1 112988 113233
YP_009146086.1 NC_027297_p145 tape measure protein phrog_3779 tail length tape measure protein tail -1 95230 98937
YP_009146048.1 NC_027297_p107 hypothetical protein phrog_5236 unknown function unknown function 1 59008 59211
YP_009145948.1 NC_027297_p7 hypothetical protein phrog_3747 unknown function unknown function -1 4374 4625
YP_009146000.1 NC_027297_p59 hypothetical protein phrog_2210 unknown function unknown function -1 29747 29947
YP_009146117.1 NC_027297_p176 hypothetical protein phrog_5145 unknown function unknown function 1 121261 121491
YP_009146003.1 NC_027297_p62 hypothetical protein phrog_11405 unknown function unknown function -1 31023 31202
YP_009146119.1 NC_027297_p178 hypothetical protein phrog_4379 unknown function unknown function 1 121867 122214
YP_009145964.1 NC_027297_p23 hypothetical protein phrog_5967 unknown function unknown function -1 14261 14461
YP_009146120.1 NC_027297_p179 hypothetical protein phrog_6973 unknown function unknown function 1 122341 122535
YP_009145999.1 NC_027297_p58 hypothetical protein phrog_5598 unknown function unknown function -1 29263 29484
YP_009146074.1 NC_027297_p133 recombination nuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 78945 79922
YP_009145993.1 NC_027297_p52 hypothetical protein phrog_5021 unknown function unknown function -1 26671 27066
YP_009146080.1 NC_027297_p139 tail fiber protein phrog_12321 tail fiber protein tail -1 83817 85907
YP_009146046.1 NC_027297_p105 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 56744 58618
YP_009146038.1 NC_027297_p97 hypothetical protein phrog_13270 unknown function unknown function -1 49691 49960
YP_009146022.1 NC_027297_p81 hypothetical protein phrog_7894 unknown function unknown function 1 40999 41427
YP_009146089.1 NC_027297_p148 minor tail protein phrog_3889 base plate tail tube protein tail -1 99849 100748
YP_009146118.1 NC_027297_p177 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 121545 121757
YP_009145960.1 NC_027297_p19 hypothetical protein phrog_6021 unknown function unknown function -1 12465 12698
YP_009146103.1 NC_027297_p162 hypothetical protein phrog_16810 unknown function unknown function 1 112310 112624
YP_009145947.1 NC_027297_p6 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 3733 4149
YP_009145980.1 NC_027297_p39 endolysin phrog_465 endolysin lysis -1 20496 20909
YP_009146085.1 NC_027297_p144 tail protein phrog_1302 distal tail protein tail -1 94507 95121
YP_009146071.1 NC_027297_p130 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 76284 77636
YP_009146040.1 NC_027297_p99 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 50307 51161
YP_009146002.1 NC_027297_p61 hypothetical protein phrog_2650 unknown function unknown function -1 30576 30932
YP_009145996.1 NC_027297_p55 ribonucleotide reductase subunit phrog_1209 unknown function unknown function -1 27756 28124
YP_009146057.1 NC_027297_p116 hypothetical protein phrog_5291 unknown function unknown function 1 65270 65503
YP_009146037.1 NC_027297_p96 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 49215 49691
YP_009146013.1 NC_027297_p72 hypothetical protein phrog_4551 unknown function unknown function -1 36007 36282
YP_009146084.1 NC_027297_p143 tail protein phrog_31 central tail fiber J tail -1 91661 94510
YP_009146050.1 NC_027297_p109 Sir2-like protein phrog_2162 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism 1 59374 60225
YP_009146034.1 NC_027297_p93 hypothetical protein phrog_2380 unknown function unknown function -1 47984 48199
YP_009145977.1 NC_027297_p36 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 19235 19525
YP_009146052.1 NC_027297_p111 hypothetical protein phrog_11166 unknown function unknown function 1 60366 60551
YP_009145950.1 NC_027297_p9 hypothetical protein phrog_4263 unknown function unknown function 1 6101 7102
YP_009146098.1 NC_027297_p157 hypothetical protein phrog_3497 unknown function unknown function -1 107743 108180
YP_009146106.1 NC_027297_p165 hypothetical protein phrog_20937 unknown function unknown function 1 113230 113445
YP_009145971.1 NC_027297_p30 hypothetical protein phrog_18933 unknown function unknown function -1 16631 16732
YP_009145942.1 NC_027297_p1 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 111 845
YP_009145953.1 NC_027297_p12 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 8052 8264
YP_009146087.1 NC_027297_p146 hypothetical protein phrog_3914 tail assembly chaperone tail -1 99018 99365
YP_009146092.1 NC_027297_p151 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 102678 103445
YP_009145990.1 NC_027297_p49 hypothetical protein phrog_5486 unknown function unknown function -1 25609 26028
YP_009146072.1 NC_027297_p131 hypothetical protein phrog_4258 unknown function unknown function 1 77777 78139
YP_009145952.1 NC_027297_p11 hypothetical protein phrog_5145 unknown function unknown function 1 7768 7998
YP_009146019.1 NC_027297_p78 nicotinamide mononucleotide transporter phrog_1880 PnuC-like nicotinamide mononucleotide transport moron, auxiliary metabolic gene and host takeover -1 37990 38667
YP_009146069.1 NC_027297_p128 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 73230 75797
YP_009146053.1 NC_027297_p112 hypothetical protein phrog_1818 unknown function unknown function 1 60529 61044
YP_009146096.1 NC_027297_p155 head protein phrog_2973 Hoc-like head decoration head and packaging -1 106047 106529
YP_009145974.1 NC_027297_p33 hypothetical protein phrog_7810 unknown function unknown function -1 17521 17889
YP_009146068.1 NC_027297_p127 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 72277 73167
YP_009146014.1 NC_027297_p73 hypothetical protein phrog_5153 unknown function unknown function -1 36373 36579
YP_009146081.1 NC_027297_p140 L-shaped tail fiber protein phrog_5481 tail fiber protein tail -1 85951 89175
YP_009146016.1 NC_027297_p75 hypothetical protein phrog_9447 unknown function unknown function -1 36816 37154
YP_009146043.1 NC_027297_p102 ribonucleoside diphosphate reductase alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 52941 55271