| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027298 |
Definition |
Pseudomonas phage LPB1, complate genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus. |
DB of origin |
REFSEQ |
Length |
36814 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
64.36 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009146163.1 | NC_027298_p43 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 23751 | 24236 |
| YP_009146148.1 | NC_027298_p28 | virion morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 16384 | 17670 |
| YP_009146129.1 | NC_027298_p9 | hypothetical protein | phrog_2119 | unknown function | unknown function | 1 | 5874 | 6287 |
| YP_009146124.1 | NC_027298_p4 | hypothetical protein | phrog_15608 | unknown function | unknown function | 1 | 1878 | 2300 |
| YP_009146169.1 | NC_027298_p49 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32338 | 32577 |
| YP_009146141.1 | NC_027298_p21 | Rz protein | phrog_2975 | Rz-like spanin | lysis | 1 | 11414 | 11815 |
| YP_009146155.1 | NC_027298_p35 | major head subunit protein | phrog_371 | major head protein | head and packaging | 1 | 20425 | 21333 |
| YP_009146156.1 | NC_027298_p36 | hypothetical protein | phrog_7976 | unknown function | unknown function | 1 | 21345 | 21647 |
| YP_009146137.1 | NC_027298_p17 | Mor | phrog_836 | late transcriptional activator | transcription regulation | 1 | 9445 | 9894 |
| YP_009146171.1 | NC_027298_p51 | tail protein | phrog_1101 | tail protein | tail | 1 | 32782 | 34989 |
| YP_009146153.1 | NC_027298_p33 | protease/scaffold protein | phrog_328 | head maturation protease | head and packaging | 1 | 18883 | 19989 |
| YP_009146144.1 | NC_027298_p24 | hypothetical protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12123 | 12623 |
| YP_009146147.1 | NC_027298_p27 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 14798 | 16384 |
| YP_009146132.1 | NC_027298_p12 | hypothetical protein | phrog_4367 | unknown function | unknown function | 1 | 7194 | 7502 |
| YP_009146133.1 | NC_027298_p13 | hypothetical protein | phrog_1518 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 7505 | 7786 |
| YP_009146134.1 | NC_027298_p14 | hypothetical protein | phrog_421 | unknown function | unknown function | 1 | 8074 | 8745 |
| YP_009146130.1 | NC_027298_p10 | hypothetical protein | phrog_2043 | unknown function | unknown function | 1 | 6277 | 6561 |
| YP_009146139.1 | NC_027298_p19 | hypothetical protein | phrog_873 | endolysin | head and packaging | 1 | 10759 | 11175 |
| YP_009146138.1 | NC_027298_p18 | hypothetical protein | phrog_1024 | unknown function | unknown function | 1 | 10289 | 10759 |
| YP_009146160.1 | NC_027298_p40 | hypothetical protein | phrog_3129 | unknown function | unknown function | 1 | 22763 | 22942 |
| YP_009146150.1 | NC_027298_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18190 | 18453 |
| YP_009146140.1 | NC_027298_p20 | hypothetical protein | phrog_4057 | unknown function | unknown function | 1 | 11175 | 11417 |
| YP_009146122.1 | NC_027298_p2 | Ner-like protein | phrog_769 | transcriptional repressor | transcription regulation | 1 | 1085 | 1441 |
| YP_009146159.1 | NC_027298_p39 | structural protein | phrog_209 | portal protein | head and packaging | 1 | 22296 | 22775 |
| YP_009146131.1 | NC_027298_p11 | hypothetical protein | phrog_846 | unknown function | unknown function | 1 | 6575 | 7192 |
| YP_009146161.1 | NC_027298_p41 | structural protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 22975 | 23754 |
| YP_009146125.1 | NC_027298_p5 | A Transposase | phrog_310 | transposase | integration and excision | 1 | 2293 | 4362 |
| YP_009146165.1 | NC_027298_p45 | structural protein | phrog_687 | structural protein | head and packaging | 1 | 27934 | 28890 |
| YP_009146166.1 | NC_027298_p46 | structural protein | phrog_687 | structural protein | head and packaging | 1 | 28892 | 29815 |
| YP_009146127.1 | NC_027298_p7 | hypothetical protein | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 5126 | 5773 |
| YP_009146121.1 | NC_027298_p1 | c repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 170 | 844 |
| YP_009146123.1 | NC_027298_p3 | hypothetical protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 1444 | 1878 |
| YP_009146168.1 | NC_027298_p48 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 31553 | 32329 |
| YP_009146173.1 | NC_027298_p53 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 36131 | 36424 |
| YP_009146136.1 | NC_027298_p16 | Mu-like GemA | phrog_286 | unknown function | unknown function | 1 | 9051 | 9452 |
| YP_009146167.1 | NC_027298_p47 | structural protein | phrog_1082 | tail assembly protein | tail | 1 | 29815 | 31518 |
| YP_009146172.1 | NC_027298_p52 | structural protein | phrog_2875 | virion structural protein | head and packaging | 1 | 34986 | 36134 |
| YP_009146151.1 | NC_027298_p31 | hypothetical protein | phrog_3865 | unknown function | unknown function | 1 | 18443 | 18664 |
| YP_009146142.1 | NC_027298_p22 | Rz.1 protein | phrog_2425 | unknown function | unknown function | 1 | 11667 | 11921 |
| YP_009146174.1 | NC_027298_p54 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 36503 | 36727 |
| YP_009146145.1 | NC_027298_p25 | hypothetical protein | phrog_1244 | unknown function | unknown function | -1 | 12626 | 13132 |
| YP_009146149.1 | NC_027298_p29 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 17670 | 18137 |
| YP_009146126.1 | NC_027298_p6 | B Transposase | phrog_296 | DNA transposition protein | integration and excision | 1 | 4359 | 5129 |
| YP_009146135.1 | NC_027298_p15 | hypothetical protein | phrog_4093 | unknown function | unknown function | 1 | 8794 | 9054 |
| YP_009146164.1 | NC_027298_p44 | minor tail protein | phrog_24 | tail length tape measure protein | tail | 1 | 24367 | 27927 |
| YP_009146157.1 | NC_027298_p37 | hypothetical protein | phrog_3376 | unknown function | unknown function | 1 | 21710 | 21886 |
| YP_009146162.1 | NC_027298_p42 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 23751 | 24364 |
| YP_009146128.1 | NC_027298_p8 | hypothetical protein | phrog_3765 | unknown function | unknown function | 1 | 5758 | 5874 |
| YP_009146154.1 | NC_027298_p34 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | 1 | 19999 | 20397 |
| YP_009146158.1 | NC_027298_p38 | head-tail connector protein | phrog_195 | head-tail adaptor | connector | 1 | 21883 | 22299 |
| YP_009146152.1 | NC_027298_p32 | hypothetical protein | phrog_10291 | unknown function | unknown function | -1 | 18760 | 18876 |
| YP_009146170.1 | NC_027298_p50 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 32574 | 32792 |
| YP_009146143.1 | NC_027298_p23 | hypothetical protein | phrog_1103 | unknown function | unknown function | 1 | 11926 | 12114 |
| YP_009146146.1 | NC_027298_p26 | large subunit terminase | phrog_38 | terminase large subunit | head and packaging | 1 | 13131 | 14786 |