Genomic map of Pseudomonas virus LPB1 (NC_027298)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027298
Definition
Pseudomonas phage LPB1, complate genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Casadabanvirus.
DB of origin
REFSEQ
Length
36814
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
54
%GC
64.36
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009146163.1 NC_027298_p43 hypothetical protein phrog_1442 tail assembly chaperone tail 1 23751 24236
YP_009146148.1 NC_027298_p28 virion morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 16384 17670
YP_009146129.1 NC_027298_p9 hypothetical protein phrog_2119 unknown function unknown function 1 5874 6287
YP_009146124.1 NC_027298_p4 hypothetical protein phrog_15608 unknown function unknown function 1 1878 2300
YP_009146169.1 NC_027298_p49 hypothetical protein phrog_1180 tail assembly chaperone tail 1 32338 32577
YP_009146141.1 NC_027298_p21 Rz protein phrog_2975 Rz-like spanin lysis 1 11414 11815
YP_009146155.1 NC_027298_p35 major head subunit protein phrog_371 major head protein head and packaging 1 20425 21333
YP_009146156.1 NC_027298_p36 hypothetical protein phrog_7976 unknown function unknown function 1 21345 21647
YP_009146137.1 NC_027298_p17 Mor phrog_836 late transcriptional activator transcription regulation 1 9445 9894
YP_009146171.1 NC_027298_p51 tail protein phrog_1101 tail protein tail 1 32782 34989
YP_009146153.1 NC_027298_p33 protease/scaffold protein phrog_328 head maturation protease head and packaging 1 18883 19989
YP_009146144.1 NC_027298_p24 hypothetical protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 12123 12623
YP_009146147.1 NC_027298_p27 portal protein phrog_113 portal protein head and packaging 1 14798 16384
YP_009146132.1 NC_027298_p12 hypothetical protein phrog_4367 unknown function unknown function 1 7194 7502
YP_009146133.1 NC_027298_p13 hypothetical protein phrog_1518 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 7505 7786
YP_009146134.1 NC_027298_p14 hypothetical protein phrog_421 unknown function unknown function 1 8074 8745
YP_009146130.1 NC_027298_p10 hypothetical protein phrog_2043 unknown function unknown function 1 6277 6561
YP_009146139.1 NC_027298_p19 hypothetical protein phrog_873 endolysin head and packaging 1 10759 11175
YP_009146138.1 NC_027298_p18 hypothetical protein phrog_1024 unknown function unknown function 1 10289 10759
YP_009146160.1 NC_027298_p40 hypothetical protein phrog_3129 unknown function unknown function 1 22763 22942
YP_009146150.1 NC_027298_p30 hypothetical protein singleton unknown function unknown function 1 18190 18453
YP_009146140.1 NC_027298_p20 hypothetical protein phrog_4057 unknown function unknown function 1 11175 11417
YP_009146122.1 NC_027298_p2 Ner-like protein phrog_769 transcriptional repressor transcription regulation 1 1085 1441
YP_009146159.1 NC_027298_p39 structural protein phrog_209 portal protein head and packaging 1 22296 22775
YP_009146131.1 NC_027298_p11 hypothetical protein phrog_846 unknown function unknown function 1 6575 7192
YP_009146161.1 NC_027298_p41 structural protein phrog_807 major tail protein with Ig-like domain tail 1 22975 23754
YP_009146125.1 NC_027298_p5 A Transposase phrog_310 transposase integration and excision 1 2293 4362
YP_009146165.1 NC_027298_p45 structural protein phrog_687 structural protein head and packaging 1 27934 28890
YP_009146166.1 NC_027298_p46 structural protein phrog_687 structural protein head and packaging 1 28892 29815
YP_009146127.1 NC_027298_p7 hypothetical protein phrog_2030 transcriptional regulator transcription regulation 1 5126 5773
YP_009146121.1 NC_027298_p1 c repressor phrog_4 transcriptional repressor transcription regulation -1 170 844
YP_009146123.1 NC_027298_p3 hypothetical protein phrog_2345 transcriptional regulator transcription regulation 1 1444 1878
YP_009146168.1 NC_027298_p48 hypothetical protein phrog_778 tail assembly protein tail 1 31553 32329
YP_009146173.1 NC_027298_p53 hypothetical protein phrog_2432 unknown function unknown function 1 36131 36424
YP_009146136.1 NC_027298_p16 Mu-like GemA phrog_286 unknown function unknown function 1 9051 9452
YP_009146167.1 NC_027298_p47 structural protein phrog_1082 tail assembly protein tail 1 29815 31518
YP_009146172.1 NC_027298_p52 structural protein phrog_2875 virion structural protein head and packaging 1 34986 36134
YP_009146151.1 NC_027298_p31 hypothetical protein phrog_3865 unknown function unknown function 1 18443 18664
YP_009146142.1 NC_027298_p22 Rz.1 protein phrog_2425 unknown function unknown function 1 11667 11921
YP_009146174.1 NC_027298_p54 hypothetical protein phrog_2623 unknown function unknown function 1 36503 36727
YP_009146145.1 NC_027298_p25 hypothetical protein phrog_1244 unknown function unknown function -1 12626 13132
YP_009146149.1 NC_027298_p29 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 17670 18137
YP_009146126.1 NC_027298_p6 B Transposase phrog_296 DNA transposition protein integration and excision 1 4359 5129
YP_009146135.1 NC_027298_p15 hypothetical protein phrog_4093 unknown function unknown function 1 8794 9054
YP_009146164.1 NC_027298_p44 minor tail protein phrog_24 tail length tape measure protein tail 1 24367 27927
YP_009146157.1 NC_027298_p37 hypothetical protein phrog_3376 unknown function unknown function 1 21710 21886
YP_009146162.1 NC_027298_p42 hypothetical protein phrog_1442 tail assembly chaperone tail 1 23751 24364
YP_009146128.1 NC_027298_p8 hypothetical protein phrog_3765 unknown function unknown function 1 5758 5874
YP_009146154.1 NC_027298_p34 hypothetical protein phrog_1731 virion structural protein head and packaging 1 19999 20397
YP_009146158.1 NC_027298_p38 head-tail connector protein phrog_195 head-tail adaptor connector 1 21883 22299
YP_009146152.1 NC_027298_p32 hypothetical protein phrog_10291 unknown function unknown function -1 18760 18876
YP_009146170.1 NC_027298_p50 hypothetical protein phrog_1196 tail assembly chaperone tail 1 32574 32792
YP_009146143.1 NC_027298_p23 hypothetical protein phrog_1103 unknown function unknown function 1 11926 12114
YP_009146146.1 NC_027298_p26 large subunit terminase phrog_38 terminase large subunit head and packaging 1 13131 14786