| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027329 |
Definition |
Salmonella phage vB_SPuM_SP116, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Felixounavirus; Salmonella virus SP116. |
DB of origin |
REFSEQ |
Length |
87510 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
126 |
%GC |
38.83 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009146299.1 | NC_027329_p54 | hypothetical protein | phrog_3977 | unknown function | unknown function | 1 | 35299 | 35799 |
| YP_009146333.1 | NC_027329_p88 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 59664 | 60764 |
| YP_009146252.1 | NC_027329_p7 | hypothetical protein | phrog_2615 | unknown function | unknown function | 1 | 6226 | 7038 |
| YP_009146322.1 | NC_027329_p77 | tail fiber protein | phrog_4277 | tail fiber protein | tail | 1 | 52722 | 55064 |
| YP_009146336.1 | NC_027329_p91 | hypothetical protein | phrog_9065 | unknown function | unknown function | -1 | 61171 | 61425 |
| YP_009146353.1 | NC_027329_p108 | ribonucleoside triphosphate reductase alpha chain | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 74153 | 76387 |
| YP_009146330.1 | NC_027329_p85 | transcriptional regulator | phrog_1373 | transcriptional regulator | transcription regulation | -1 | 58344 | 58643 |
| YP_009146360.1 | NC_027329_p115 | oxygen sensitive ribonucleoside-triphosphate reductase | phrog_4218 | anaerobic ribonucleoside reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 80280 | 81146 |
| YP_009146259.1 | NC_027329_p14 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 8586 | 9371 |
| YP_009146282.1 | NC_027329_p37 | hypothetical protein | phrog_4459 | unknown function | unknown function | -1 | 19981 | 20214 |
| YP_009146289.1 | NC_027329_p44 | tail protein | phrog_3995 | tail protein | tail | -1 | 22811 | 23443 |
| YP_009146284.1 | NC_027329_p39 | hypothetical protein | phrog_4040 | unknown function | unknown function | -1 | 20864 | 21208 |
| YP_009146276.1 | NC_027329_p31 | hypothetical protein | phrog_4330 | unknown function | unknown function | -1 | 17406 | 17954 |
| YP_009146302.1 | NC_027329_p57 | hypothetical protein | phrog_4146 | tail protease | other | 1 | 37501 | 37878 |
| YP_009146335.1 | NC_027329_p90 | hypothetical protein | phrog_4427 | unknown function | unknown function | -1 | 60955 | 61161 |
| YP_009146274.1 | NC_027329_p29 | hypothetical protein | phrog_4725 | unknown function | unknown function | 1 | 14874 | 15404 |
| YP_009146306.1 | NC_027329_p61 | hypothetical protein | phrog_2874 | unknown function | unknown function | 1 | 39968 | 40369 |
| YP_009146251.1 | NC_027329_p6 | hypothetical protein | phrog_56 | DNA methyltransferase | other | 1 | 5330 | 6214 |
| YP_009146323.1 | NC_027329_p78 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 55225 | 55338 |
| YP_009146366.1 | NC_027329_p121 | hypothetical protein | phrog_3500 | unknown function | unknown function | 1 | 83353 | 83868 |
| YP_009146341.1 | NC_027329_p96 | minor tail protein | phrog_4251 | minor tail protein | tail | 1 | 65744 | 66556 |
| YP_009146314.1 | NC_027329_p69 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 46515 | 46856 |
| YP_009146257.1 | NC_027329_p12 | hypothetical protein | phrog_6082 | unknown function | unknown function | 1 | 8165 | 8392 |
| YP_009146297.1 | NC_027329_p52 | terminase,large subunit | phrog_979 | terminase large subunit | head and packaging | 1 | 32215 | 33816 |
| YP_009146254.1 | NC_027329_p9 | hypothetical protein | phrog_4180 | unknown function | unknown function | 1 | 7398 | 7595 |
| YP_009146270.1 | NC_027329_p25 | hypothetical protein | phrog_4640 | unknown function | unknown function | 1 | 13792 | 14025 |
| YP_009146246.1 | NC_027329_p1 | rIIA | phrog_612 | RIIA lysis inhibitor | lysis | 1 | 1 | 2292 |
| YP_009146298.1 | NC_027329_p53 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 33824 | 35299 |
| YP_009146348.1 | NC_027329_p103 | hypothetical protein | phrog_447 | NAD synthetase | other | 1 | 71973 | 72470 |
| YP_009146368.1 | NC_027329_p123 | hypothetical protein | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 84151 | 85032 |
| YP_009146319.1 | NC_027329_p74 | hypothetical protein | phrog_4017 | baseplate protein | tail | 1 | 50347 | 51204 |
| YP_009146354.1 | NC_027329_p109 | hypothetical protein | phrog_2652 | unknown function | unknown function | 1 | 76506 | 76700 |
| YP_009146321.1 | NC_027329_p76 | long tail fiber protein | phrog_2097 | tail fiber protein | tail | 1 | 51509 | 52675 |
| YP_009146346.1 | NC_027329_p101 | hypothetical protein | phrog_3877 | unknown function | unknown function | 1 | 70023 | 70880 |
| YP_009146320.1 | NC_027329_p75 | hypothetical protein | phrog_4141 | unknown function | unknown function | 1 | 51204 | 51506 |
| YP_009146295.1 | NC_027329_p50 | hypothetical protein | phrog_2114 | unknown function | unknown function | 1 | 30862 | 31596 |
| YP_009146324.1 | NC_027329_p79 | hypothetical protein | phrog_4038 | unknown function | unknown function | 1 | 55339 | 55710 |
| YP_009146309.1 | NC_027329_p64 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 42312 | 42758 |
| YP_009146280.1 | NC_027329_p35 | hypothetical protein | phrog_4457 | unknown function | unknown function | -1 | 19180 | 19404 |
| YP_009146349.1 | NC_027329_p104 | hypothetical protein | phrog_4442 | unknown function | unknown function | 1 | 72477 | 72740 |
| YP_009146312.1 | NC_027329_p67 | tail length tape-measure protein | phrog_4036 | tail length tape measure protein | tail | 1 | 43472 | 45718 |
| YP_009146250.1 | NC_027329_p5 | hypothetical protein | phrog_2267 | unknown function | unknown function | 1 | 4814 | 5278 |
| YP_009146262.1 | NC_027329_p17 | hypothetical protein | phrog_4495 | unknown function | unknown function | 1 | 10379 | 10759 |
| YP_009146367.1 | NC_027329_p122 | hypothetical protein | phrog_4726 | unknown function | unknown function | 1 | 83861 | 84139 |
| YP_009146329.1 | NC_027329_p84 | hypothetical protein | phrog_4116 | unknown function | unknown function | -1 | 57983 | 58342 |
| YP_009146265.1 | NC_027329_p20 | hypothetical protein | phrog_4375 | unknown function | unknown function | 1 | 11519 | 11851 |
| YP_009146260.1 | NC_027329_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9458 | 9610 |
| YP_009146311.1 | NC_027329_p66 | hypothetical protein | phrog_4963 | tail assembly chaperone | tail | 1 | 43233 | 43472 |
| YP_009146285.1 | NC_027329_p40 | hypothetical protein | phrog_4385 | unknown function | unknown function | -1 | 21201 | 21494 |
| YP_009146304.1 | NC_027329_p59 | hypothetical protein | phrog_1732 | unknown function | unknown function | 1 | 39040 | 39489 |
| YP_009146263.1 | NC_027329_p18 | hypothetical protein | phrog_5089 | unknown function | unknown function | 1 | 10848 | 11138 |
| YP_009146305.1 | NC_027329_p60 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 39537 | 39971 |
| YP_009146308.1 | NC_027329_p63 | structural protein | phrog_205 | tail sheath | tail | 1 | 40944 | 42296 |
| YP_009146318.1 | NC_027329_p73 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 48875 | 50344 |
| YP_009146317.1 | NC_027329_p72 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 48456 | 48875 |
| YP_009146293.1 | NC_027329_p48 | hypothetical protein | phrog_13848 | unknown function | unknown function | 1 | 29660 | 29767 |
| YP_009146266.1 | NC_027329_p21 | hypothetical protein | phrog_3436 | unknown function | unknown function | 1 | 11940 | 12212 |
| YP_009146253.1 | NC_027329_p8 | hypothetical protein | phrog_1152 | Rz-like spanin | lysis | 1 | 7085 | 7432 |
| YP_009146334.1 | NC_027329_p89 | hypothetical protein | phrog_5768 | unknown function | unknown function | -1 | 60761 | 60958 |
| YP_009146249.1 | NC_027329_p4 | hypothetical protein | phrog_3970 | polynucleotide kinase | other | 1 | 4108 | 4803 |
| YP_009146286.1 | NC_027329_p41 | hypothetical protein | phrog_4348 | unknown function | unknown function | -1 | 21494 | 21904 |
| YP_009146261.1 | NC_027329_p16 | hypothetical protein | phrog_15633 | unknown function | unknown function | 1 | 9894 | 10085 |
| YP_009146258.1 | NC_027329_p13 | hypothetical protein | phrog_2210 | unknown function | unknown function | 1 | 8385 | 8585 |
| YP_009146362.1 | NC_027329_p117 | anaerobic NTP reductase, small subunit | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 81937 | 82413 |
| YP_009146331.1 | NC_027329_p86 | hypothetical protein | phrog_4473 | unknown function | unknown function | -1 | 58636 | 58848 |
| YP_009146300.1 | NC_027329_p55 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 35799 | 36131 |
| YP_009146279.1 | NC_027329_p34 | hypothetical protein | phrog_9967 | unknown function | unknown function | -1 | 18854 | 19126 |
| YP_009146351.1 | NC_027329_p106 | hypothetical protein | phrog_4007 | unknown function | unknown function | 1 | 73452 | 73775 |
| YP_009146277.1 | NC_027329_p32 | hypothetical protein | phrog_4713 | unknown function | unknown function | -1 | 17968 | 18432 |
| YP_009146292.1 | NC_027329_p47 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 25299 | 26714 |
| YP_009146339.1 | NC_027329_p94 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 62364 | 65096 |
| YP_009146370.1 | NC_027329_p125 | hypothetical protein | phrog_4262 | unknown function | unknown function | 1 | 86914 | 87249 |
| YP_009146343.1 | NC_027329_p98 | hypothetical protein | phrog_4469 | unknown function | unknown function | 1 | 67370 | 67570 |
| YP_009146316.1 | NC_027329_p71 | baseplate protein | phrog_11 | baseplate spike | tail | 1 | 47833 | 48456 |
| YP_009146352.1 | NC_027329_p107 | hypothetical protein | phrog_3358 | unknown function | unknown function | 1 | 73768 | 74106 |
| YP_009146342.1 | NC_027329_p97 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 66603 | 67361 |
| YP_009146264.1 | NC_027329_p19 | hypothetical protein | phrog_4401 | unknown function | unknown function | 1 | 11229 | 11525 |
| YP_009146272.1 | NC_027329_p27 | hypothetical protein | phrog_4318 | unknown function | unknown function | 1 | 14310 | 14651 |
| YP_009146281.1 | NC_027329_p36 | hypothetical protein | phrog_4343 | unknown function | unknown function | -1 | 19481 | 20014 |
| YP_009146291.1 | NC_027329_p46 | hypothetical protein | phrog_4114 | unknown function | unknown function | 1 | 24846 | 25217 |
| YP_009146267.1 | NC_027329_p22 | hypothetical protein | phrog_4327 | unknown function | unknown function | 1 | 12298 | 12702 |
| YP_009146273.1 | NC_027329_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14703 | 14807 |
| YP_009146359.1 | NC_027329_p114 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 79572 | 80036 |
| YP_009146338.1 | NC_027329_p93 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 61852 | 62364 |
| YP_009146369.1 | NC_027329_p124 | nictotinate phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 85061 | 86860 |
| YP_009146347.1 | NC_027329_p102 | exodeoxyribonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 70943 | 71983 |
| YP_009146278.1 | NC_027329_p33 | hypothetical protein | phrog_7193 | unknown function | unknown function | -1 | 18422 | 18850 |
| YP_009146248.1 | NC_027329_p3 | hypothetical protein | phrog_600 | unknown function | unknown function | 1 | 3582 | 4130 |
| YP_009146303.1 | NC_027329_p58 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 37912 | 39018 |
| YP_009146310.1 | NC_027329_p65 | hypothetical protein | phrog_1613 | tail assembly chaperone | tail | 1 | 42832 | 43230 |
| YP_009146269.1 | NC_027329_p24 | hypothetical protein | phrog_3303 | unknown function | unknown function | 1 | 13183 | 13725 |
| YP_009146340.1 | NC_027329_p95 | hypothetical protein | phrog_4039 | unknown function | unknown function | 1 | 65320 | 65742 |
| YP_009146307.1 | NC_027329_p62 | hypothetical protein | phrog_4082 | unknown function | unknown function | 1 | 40344 | 40943 |
| YP_009146327.1 | NC_027329_p82 | hypothetical protein | phrog_2993 | unknown function | unknown function | -1 | 57193 | 57453 |
| YP_009146345.1 | NC_027329_p100 | hypothetical protein | phrog_4424 | unknown function | unknown function | 1 | 69801 | 69950 |
| YP_009146301.1 | NC_027329_p56 | head maturation protease | phrog_53 | head maturation protease | head and packaging | 1 | 36143 | 37489 |
| YP_009146256.1 | NC_027329_p11 | hypothetical protein | phrog_4453 | unknown function | unknown function | 1 | 7864 | 8190 |
| YP_009146356.1 | NC_027329_p111 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 77770 | 78012 |
| YP_009146268.1 | NC_027329_p23 | hypothetical protein | phrog_3623 | unknown function | unknown function | 1 | 12894 | 13097 |
| YP_009146275.1 | NC_027329_p30 | hypothetical protein | phrog_4559 | unknown function | unknown function | 1 | 15471 | 15719 |
| YP_009146328.1 | NC_027329_p83 | hypothetical protein | phrog_4422 | unknown function | unknown function | -1 | 57454 | 57969 |
| YP_009146371.1 | NC_027329_p126 | hypothetical protein | phrog_3931 | unknown function | unknown function | 1 | 87231 | 87407 |
| YP_009146271.1 | NC_027329_p26 | hypothetical protein | phrog_31746 | unknown function | unknown function | 1 | 14115 | 14261 |
| YP_009146337.1 | NC_027329_p92 | hypothetical protein | phrog_4230 | unknown function | unknown function | -1 | 61588 | 61800 |
| YP_009146287.1 | NC_027329_p42 | hypothetical protein | phrog_4266 | unknown function | unknown function | -1 | 21897 | 22295 |
| YP_009146358.1 | NC_027329_p113 | oxygen sensitive ribonucleoside-triphosphate reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 78260 | 79459 |
| YP_009146332.1 | NC_027329_p87 | hypothetical protein | phrog_4332 | unknown function | unknown function | -1 | 58850 | 59233 |
| YP_009146255.1 | NC_027329_p10 | hypothetical protein | phrog_4391 | unknown function | unknown function | 1 | 7592 | 7861 |
| YP_009146288.1 | NC_027329_p43 | lysis protein | phrog_7 | endolysin | lysis | -1 | 22347 | 22811 |
| YP_009146315.1 | NC_027329_p70 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 46856 | 47833 |
| YP_009146350.1 | NC_027329_p105 | hypothetical protein | phrog_2144 | MazG-like pyrophosphatase | other | 1 | 72716 | 73471 |
| YP_009146361.1 | NC_027329_p116 | hypothetical protein | phrog_4382 | unknown function | unknown function | 1 | 81497 | 81892 |
| YP_009146326.1 | NC_027329_p81 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 56651 | 57196 |
| YP_009146355.1 | NC_027329_p110 | ribonucleoside triphosphate reductase beta chain | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 76697 | 77770 |
| YP_009146344.1 | NC_027329_p99 | phage DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 67563 | 69548 |
| YP_009146296.1 | NC_027329_p51 | hypothetical protein | phrog_4397 | unknown function | unknown function | 1 | 31993 | 32193 |
| YP_009146357.1 | NC_027329_p112 | hypothetical protein | phrog_4532 | unknown function | unknown function | 1 | 78005 | 78211 |
| YP_009146325.1 | NC_027329_p80 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 55750 | 56649 |
| YP_009146290.1 | NC_027329_p45 | hypothetical protein | phrog_4034 | unknown function | unknown function | -1 | 23636 | 24226 |
| YP_009146365.1 | NC_027329_p120 | hypothetical protein | phrog_4462 | unknown function | unknown function | 1 | 82980 | 83300 |
| YP_009146313.1 | NC_027329_p68 | hypothetical protein | phrog_3721 | unknown function | unknown function | 1 | 45718 | 46515 |
| YP_009146363.1 | NC_027329_p118 | hypothetical protein | phrog_5082 | unknown function | unknown function | 1 | 82451 | 82753 |
| YP_009146294.1 | NC_027329_p49 | hypothetical protein | phrog_2143 | unknown function | unknown function | 1 | 29853 | 30410 |
| YP_009146283.1 | NC_027329_p38 | hypothetical protein | phrog_4109 | unknown function | unknown function | -1 | 20283 | 20864 |
| YP_009146247.1 | NC_027329_p2 | rIIB | phrog_609 | RIIB lysis inhibitor | lysis | 1 | 2372 | 3481 |
| YP_009146364.1 | NC_027329_p119 | hypothetical protein | phrog_4425 | unknown function | unknown function | 1 | 82720 | 82977 |