Genomic map of Aurantimonas phage AmM-1 (NC_027334)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027334
Definition
Aurantimonas phage AmM-1 DNA, complete sequence.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
47800
Host Name
Aurantimonas sp. C5-1
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
66.68
Number of singletons
20
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009146977.1 NC_027334_p40 hypothetical protein singleton unknown function unknown function -1 28808 29116
YP_009147001.1 NC_027334_p64 DNA primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 42478 44235
YP_009146984.1 NC_027334_p47 hypothetical protein phrog_2045 unknown function unknown function -1 31215 32279
YP_009147004.1 NC_027334_p67 DNA methylase phrog_498 DNA methyltransferase other 1 46377 47789
YP_009146983.1 NC_027334_p46 hypothetical protein singleton unknown function unknown function -1 30745 31218
YP_009147003.1 NC_027334_p66 hypothetical protein phrog_27 tail completion or Neck1 protein connector 1 45585 46178
YP_009146939.1 NC_027334_p2 terminase large subunit phrog_15 terminase large subunit head and packaging 1 588 2570
YP_009146944.1 NC_027334_p7 major capsid phrog_29 major head protein head and packaging 1 6003 7031
YP_009146960.1 NC_027334_p23 hypothetical protein phrog_30387 unknown function unknown function 1 17773 18249
YP_009146986.1 NC_027334_p49 hypothetical protein phrog_464 unknown function unknown function -1 32583 32981
YP_009146979.1 NC_027334_p42 hypothetical protein singleton unknown function unknown function 1 29463 29876
YP_009146989.1 NC_027334_p52 hypothetical protein phrog_204 unknown function unknown function -1 35183 35533
YP_009146993.1 NC_027334_p56 hypothetical protein singleton unknown function unknown function -1 36665 36841
YP_009146987.1 NC_027334_p50 DNA polymerase III beta subunit phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 32981 34120
YP_009146998.1 NC_027334_p61 Zinc-binding domain containing protein phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 39268 40515
YP_009147002.1 NC_027334_p65 hypothetical protein phrog_9306 unknown function unknown function 1 44590 45501
YP_009146972.1 NC_027334_p35 chromosome partitioning protein ParA phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 26241 26924
YP_009146978.1 NC_027334_p41 hypothetical protein singleton unknown function unknown function -1 29127 29357
YP_009146962.1 NC_027334_p25 tail assembly protein phrog_76 tail protein tail 1 20438 20878
YP_009146950.1 NC_027334_p13 hypothetical protein singleton unknown function unknown function 1 9251 9478
YP_009146947.1 NC_027334_p10 hypothetical protein phrog_12983 unknown function unknown function 1 7725 8537
YP_009146995.1 NC_027334_p58 CI repressor phrog_4 transcriptional repressor transcription regulation -1 37576 38325
YP_009146967.1 NC_027334_p30 hypothetical protein phrog_1275 Rz-like spanin lysis 1 23713 23910
YP_009146997.1 NC_027334_p60 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation 1 38795 39268
YP_009146988.1 NC_027334_p51 hypothetical protein phrog_210 unknown function unknown function -1 34126 35142
YP_009146992.1 NC_027334_p55 hypothetical protein singleton unknown function unknown function -1 36441 36668
YP_009146975.1 NC_027334_p38 hypothetical protein singleton unknown function unknown function -1 27996 28280
YP_009146982.1 NC_027334_p45 hypothetical protein singleton unknown function unknown function -1 30467 30748
YP_009146968.1 NC_027334_p31 hypothetical protein phrog_13918 unknown function unknown function 1 23935 24258
YP_009147000.1 NC_027334_p63 DnaA C-terminal domain containing protein singleton unknown function unknown function 1 41303 42493
YP_009146952.1 NC_027334_p15 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 9875 10801
YP_009146966.1 NC_027334_p29 holin singleton unknown function unknown function 1 23274 23513
YP_009146976.1 NC_027334_p39 hypothetical protein phrog_37929 unknown function unknown function -1 28300 28608
YP_009146951.1 NC_027334_p14 baseplate component phrog_43 baseplate wedge subunit tail 1 9480 9878
YP_009146948.1 NC_027334_p11 baseplate assembly protein phrog_11 baseplate spike tail 1 8534 8980
YP_009146990.1 NC_027334_p53 hypothetical protein phrog_318 deoxyribonucleoside 5' monophosphate phosphatase other -1 35549 36235
YP_009146996.1 NC_027334_p59 hypothetical protein phrog_7669 unknown function unknown function 1 38412 38798
YP_009146971.1 NC_027334_p34 hypothetical protein singleton unknown function unknown function -1 25939 26244
YP_009146953.1 NC_027334_p16 tail protein phrog_48 tail protein tail 1 10798 11457
YP_009146964.1 NC_027334_p27 late control protein phrog_52 tail protein tail 1 21125 22210
YP_009146954.1 NC_027334_p17 hypothetical protein phrog_17470 unknown function unknown function 1 11468 13750
YP_009146940.1 NC_027334_p3 portal protein phrog_21 portal protein head and packaging 1 2552 4204
YP_009146974.1 NC_027334_p37 hypothetical protein singleton unknown function unknown function -1 27747 27974
YP_009146961.1 NC_027334_p24 tape measure protein phrog_35707 tail length tape measure protein tail 1 18249 20432
YP_009146945.1 NC_027334_p8 hypothetical protein phrog_38661 unknown function unknown function 1 7110 7337
YP_009146985.1 NC_027334_p48 hypothetical protein singleton unknown function unknown function -1 32387 32605
YP_009146957.1 NC_027334_p20 hypothetical protein phrog_6098 unknown function unknown function 1 15506 15733
YP_009146981.1 NC_027334_p44 hypothetical protein singleton unknown function unknown function 1 30242 30421
YP_009146958.1 NC_027334_p21 tail sheath phrog_23 tail sheath tail 1 15869 17092
YP_009146938.1 NC_027334_p1 hypothetical protein phrog_57 terminase small subunit head and packaging 1 1 591
YP_009146999.1 NC_027334_p62 hypothetical protein phrog_799 DNA methyltransferase other 1 40515 41306
YP_009146970.1 NC_027334_p33 hypothetical protein phrog_15967 unknown function unknown function -1 24880 25803
YP_009146943.1 NC_027334_p6 head decoration protein D phrog_49 head decoration head and packaging 1 5614 5988
YP_009146941.1 NC_027334_p4 hypothetical protein phrog_17985 unknown function unknown function 1 4204 4461
YP_009146994.1 NC_027334_p57 hypothetical protein singleton unknown function unknown function 1 37073 37579
YP_009146965.1 NC_027334_p28 lysozyme phrog_1224 endolysin head and packaging 1 22300 23274
YP_009146991.1 NC_027334_p54 hypothetical protein singleton unknown function unknown function -1 36232 36444
YP_009146949.1 NC_027334_p12 PAAR repeat-containing protein phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover 1 8980 9240
YP_009146969.1 NC_027334_p32 hypothetical protein phrog_34568 unknown function unknown function 1 24258 24809
YP_009146959.1 NC_027334_p22 tail tube phrog_55 head closure connector 1 17177 17695
YP_009146956.1 NC_027334_p19 hypothetical protein singleton unknown function unknown function 1 15052 15513
YP_009146955.1 NC_027334_p18 hypothetical protein singleton unknown function unknown function 1 13904 15055
YP_009146942.1 NC_027334_p5 Clp protease phrog_53 head maturation protease head and packaging 1 4472 5557
YP_009146980.1 NC_027334_p43 hypothetical protein phrog_4887 unknown function unknown function 1 29890 30201
YP_009146946.1 NC_027334_p9 hypothetical protein phrog_25398 unknown function unknown function 1 7343 7720
YP_009146963.1 NC_027334_p26 tail protein phrog_46 baseplate hub tail 1 20881 21114
YP_009146973.1 NC_027334_p36 hypothetical protein singleton unknown function unknown function -1 27473 27724