| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027339 |
Definition |
Enterobacteria phage SfI, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
38389 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
50.11 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009147459.1 | NC_027339_p12 | tail sheath protein | phrog_165 | tail sheath | tail | 1 | 7771 | 9267 |
| YP_009147470.1 | NC_027339_p23 | phage tail fiber protein | phrog_188 | tail fiber assembly protein | tail | 1 | 17490 | 17993 |
| YP_009147492.1 | NC_027339_p45 | exclusion protein | phrog_14878 | RexB-like exclusion protein | moron, auxiliary metabolic gene and host takeover | -1 | 28381 | 28815 |
| YP_009147454.1 | NC_027339_p7 | hypothetical protein | phrog_1020 | unknown function | unknown function | 1 | 5608 | 5808 |
| YP_009147506.1 | NC_027339_p59 | NinH protein | singleton | unknown function | unknown function | 1 | 35111 | 35167 |
| YP_009147463.1 | NC_027339_p16 | hypothetical protein | phrog_184 | baseplate hub | tail | 1 | 11915 | 13258 |
| YP_009147472.1 | NC_027339_p25 | bactoprenol glucosyl transferase | phrog_841 | GtrB-like O-antigen conversion | moron, auxiliary metabolic gene and host takeover | -1 | 19750 | 20670 |
| YP_009147461.1 | NC_027339_p14 | bacteriophage protein | phrog_166 | tail protein | tail | 1 | 9623 | 9892 |
| YP_009147511.1 | NC_027339_p64 | hypothetical protein | phrog_5039 | unknown function | unknown function | 1 | 37203 | 37577 |
| YP_009147479.1 | NC_027339_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23296 | 23649 |
| YP_009147465.1 | NC_027339_p18 | tail protein | phrog_11 | baseplate spike | tail | 1 | 14334 | 14882 |
| YP_009147450.1 | NC_027339_p3 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2287 | 2469 |
| YP_009147481.1 | NC_027339_p34 | hypothetical protein | phrog_1998 | unknown function | unknown function | -1 | 24268 | 24432 |
| YP_009147468.1 | NC_027339_p21 | tail protein | phrog_203 | baseplate wedge subunit | tail | 1 | 16343 | 16927 |
| YP_009147502.1 | NC_027339_p55 | methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 33607 | 34164 |
| YP_009147460.1 | NC_027339_p13 | hypothetical protein | phrog_185 | tail tube protein | tail | 1 | 9267 | 9623 |
| YP_009147504.1 | NC_027339_p57 | NinF | phrog_672 | unknown function | unknown function | 1 | 34340 | 34510 |
| YP_009147491.1 | NC_027339_p44 | antitermination protein N | phrog_271 | anti-termination protein N-like | transcription regulation | -1 | 27632 | 27964 |
| YP_009147505.1 | NC_027339_p58 | NinG protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34503 | 35114 |
| YP_009147494.1 | NC_027339_p47 | repressor protein cI | phrog_4 | transcriptional repressor | transcription regulation | -1 | 29783 | 30496 |
| YP_009147464.1 | NC_027339_p17 | MuP protein | phrog_177 | baseplate hub | tail | 1 | 13255 | 14334 |
| YP_009147512.1 | NC_027339_p65 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37964 | 38314 |
| YP_009147509.1 | NC_027339_p62 | lysozyme | phrog_7 | endolysin | lysis | 1 | 36227 | 36724 |
| YP_009147499.1 | NC_027339_p52 | Ren protein | phrog_142 | Ren-like exclusion protein | moron, auxiliary metabolic gene and host takeover | 1 | 32836 | 33126 |
| YP_009147456.1 | NC_027339_p9 | hypothetical protein | phrog_879 | tail completion or Neck1 protein | connector | 1 | 6545 | 7051 |
| YP_009147477.1 | NC_027339_p30 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 22979 | 23197 |
| YP_009147488.1 | NC_027339_p41 | restriction alleviation protein | phrog_1055 | restriction alleviation ral | DNA, RNA and nucleotide metabolism | -1 | 27182 | 27361 |
| YP_009147485.1 | NC_027339_p38 | host-killing protein | phrog_2461 | Kil protein for bacterial septation inhibition | other | -1 | 26262 | 26531 |
| YP_009147466.1 | NC_027339_p19 | tail protein | phrog_180 | baseplate wedge subunit | tail | 1 | 14882 | 15307 |
| YP_009147500.1 | NC_027339_p53 | hypothetical protein | phrog_5907 | unknown function | unknown function | 1 | 33123 | 33203 |
| YP_009147486.1 | NC_027339_p39 | antitermination protein | phrog_550 | CIII anti-termination | transcription regulation | -1 | 26374 | 26538 |
| YP_009147480.1 | NC_027339_p33 | hypothetical protein | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 23519 | 24271 |
| YP_009147508.1 | NC_027339_p61 | lysozyme | phrog_20 | holin | lysis | 1 | 36012 | 36227 |
| YP_009147451.1 | NC_027339_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2595 | 3710 |
| YP_009147476.1 | NC_027339_p29 | hypothetical protein | phrog_285 | unknown function | unknown function | -1 | 22653 | 22931 |
| YP_009147493.1 | NC_027339_p46 | exclusion protein | phrog_12654 | RexA-like exclusion protein | moron, auxiliary metabolic gene and host takeover | -1 | 28831 | 29670 |
| YP_009147453.1 | NC_027339_p6 | phage major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4353 | 5558 |
| YP_009147507.1 | NC_027339_p60 | antiterminator Q protein | phrog_943 | anti-termination protein Q-like | transcription regulation | 1 | 35158 | 35646 |
| YP_009147501.1 | NC_027339_p54 | recombination protein NinB | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 33200 | 33640 |
| YP_009147482.1 | NC_027339_p35 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 24423 | 25103 |
| YP_009147473.1 | NC_027339_p26 | flippase | phrog_2224 | GtrA-like O-antigen conversion | moron, auxiliary metabolic gene and host takeover | -1 | 20667 | 21029 |
| YP_009147490.1 | NC_027339_p43 | hypothetical protein | phrog_1871 | unknown function | unknown function | -1 | 27486 | 27623 |
| YP_009147449.1 | NC_027339_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 542 | 2275 |
| YP_009147467.1 | NC_027339_p20 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 15294 | 16352 |
| YP_009147489.1 | NC_027339_p42 | hypothetical protein | phrog_16060 | unknown function | unknown function | -1 | 27345 | 27431 |
| YP_009147478.1 | NC_027339_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23204 | 23293 |
| YP_009147452.1 | NC_027339_p5 | phage pro-head protease | phrog_80 | head maturation protease | head and packaging | 1 | 3652 | 4338 |
| YP_009147458.1 | NC_027339_p11 | hypothetical protein | phrog_208 | unknown function | unknown function | 1 | 7617 | 7787 |
| YP_009147487.1 | NC_027339_p40 | single-stranded DNA binding protein | phrog_646 | unknown function | unknown function | -1 | 26611 | 26979 |
| YP_009147469.1 | NC_027339_p22 | hypothetical protein | phrog_1396 | tail fiber protein | tail | 1 | 16931 | 17581 |
| YP_009147457.1 | NC_027339_p10 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 7048 | 7608 |
| YP_009147498.1 | NC_027339_p51 | replication protein P | phrog_109 | P-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 32138 | 32839 |
| YP_009147455.1 | NC_027339_p8 | phage head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6160 | 6570 |
| YP_009147462.1 | NC_027339_p15 | tail protein | phrog_28 | tail length tape measure protein | tail | 1 | 10034 | 11869 |
| YP_009147474.1 | NC_027339_p27 | phage integrase family site-specific recombinase | phrog_1 | integrase | integration and excision | -1 | 21291 | 22454 |
| YP_009147510.1 | NC_027339_p63 | Rz protein | phrog_13 | Rz-like spanin | lysis | 1 | 36721 | 37164 |
| YP_009147483.1 | NC_027339_p36 | phage recombination protein Bet | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25100 | 25885 |
| YP_009147495.1 | NC_027339_p48 | Cro protein | phrog_35 | transcriptional repressor | transcription regulation | 1 | 30597 | 30797 |
| YP_009147448.1 | NC_027339_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 51 | 545 |
| YP_009147475.1 | NC_027339_p28 | excisionase | phrog_2907 | excisionase | integration and excision | -1 | 22331 | 22681 |
| YP_009147497.1 | NC_027339_p50 | replication protein O | phrog_277 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 31242 | 32141 |
| YP_009147496.1 | NC_027339_p49 | cII protein | phrog_191 | CII-like transcriptional activator | transcription regulation | 1 | 30916 | 31209 |
| YP_009147484.1 | NC_027339_p37 | host-nuclease inhibitor protein gam | phrog_259 | gam-like host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 25891 | 26307 |
| YP_009147471.1 | NC_027339_p24 | glycosyltransferase | singleton | unknown function | unknown function | -1 | 18227 | 19747 |
| YP_009147503.1 | NC_027339_p56 | NinE | phrog_288 | unknown function | unknown function | 1 | 34161 | 34343 |