Genomic map of Enterobacteria phage SfI (NC_027339)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027339
Definition
Enterobacteria phage SfI, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
38389
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
65
%GC
50.11
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009147459.1 NC_027339_p12 tail sheath protein phrog_165 tail sheath tail 1 7771 9267
YP_009147470.1 NC_027339_p23 phage tail fiber protein phrog_188 tail fiber assembly protein tail 1 17490 17993
YP_009147492.1 NC_027339_p45 exclusion protein phrog_14878 RexB-like exclusion protein moron, auxiliary metabolic gene and host takeover -1 28381 28815
YP_009147454.1 NC_027339_p7 hypothetical protein phrog_1020 unknown function unknown function 1 5608 5808
YP_009147506.1 NC_027339_p59 NinH protein singleton unknown function unknown function 1 35111 35167
YP_009147463.1 NC_027339_p16 hypothetical protein phrog_184 baseplate hub tail 1 11915 13258
YP_009147472.1 NC_027339_p25 bactoprenol glucosyl transferase phrog_841 GtrB-like O-antigen conversion moron, auxiliary metabolic gene and host takeover -1 19750 20670
YP_009147461.1 NC_027339_p14 bacteriophage protein phrog_166 tail protein tail 1 9623 9892
YP_009147511.1 NC_027339_p64 hypothetical protein phrog_5039 unknown function unknown function 1 37203 37577
YP_009147479.1 NC_027339_p32 hypothetical protein singleton unknown function unknown function -1 23296 23649
YP_009147465.1 NC_027339_p18 tail protein phrog_11 baseplate spike tail 1 14334 14882
YP_009147450.1 NC_027339_p3 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover 1 2287 2469
YP_009147481.1 NC_027339_p34 hypothetical protein phrog_1998 unknown function unknown function -1 24268 24432
YP_009147468.1 NC_027339_p21 tail protein phrog_203 baseplate wedge subunit tail 1 16343 16927
YP_009147502.1 NC_027339_p55 methyltransferase phrog_111 DNA methyltransferase other 1 33607 34164
YP_009147460.1 NC_027339_p13 hypothetical protein phrog_185 tail tube protein tail 1 9267 9623
YP_009147504.1 NC_027339_p57 NinF phrog_672 unknown function unknown function 1 34340 34510
YP_009147491.1 NC_027339_p44 antitermination protein N phrog_271 anti-termination protein N-like transcription regulation -1 27632 27964
YP_009147505.1 NC_027339_p58 NinG protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 34503 35114
YP_009147494.1 NC_027339_p47 repressor protein cI phrog_4 transcriptional repressor transcription regulation -1 29783 30496
YP_009147464.1 NC_027339_p17 MuP protein phrog_177 baseplate hub tail 1 13255 14334
YP_009147512.1 NC_027339_p65 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37964 38314
YP_009147509.1 NC_027339_p62 lysozyme phrog_7 endolysin lysis 1 36227 36724
YP_009147499.1 NC_027339_p52 Ren protein phrog_142 Ren-like exclusion protein moron, auxiliary metabolic gene and host takeover 1 32836 33126
YP_009147456.1 NC_027339_p9 hypothetical protein phrog_879 tail completion or Neck1 protein connector 1 6545 7051
YP_009147477.1 NC_027339_p30 hypothetical protein phrog_54 DksA-like zinc-finger protein other -1 22979 23197
YP_009147488.1 NC_027339_p41 restriction alleviation protein phrog_1055 restriction alleviation ral DNA, RNA and nucleotide metabolism -1 27182 27361
YP_009147485.1 NC_027339_p38 host-killing protein phrog_2461 Kil protein for bacterial septation inhibition other -1 26262 26531
YP_009147466.1 NC_027339_p19 tail protein phrog_180 baseplate wedge subunit tail 1 14882 15307
YP_009147500.1 NC_027339_p53 hypothetical protein phrog_5907 unknown function unknown function 1 33123 33203
YP_009147486.1 NC_027339_p39 antitermination protein phrog_550 CIII anti-termination transcription regulation -1 26374 26538
YP_009147480.1 NC_027339_p33 hypothetical protein phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover -1 23519 24271
YP_009147508.1 NC_027339_p61 lysozyme phrog_20 holin lysis 1 36012 36227
YP_009147451.1 NC_027339_p4 portal protein phrog_12 portal protein head and packaging 1 2595 3710
YP_009147476.1 NC_027339_p29 hypothetical protein phrog_285 unknown function unknown function -1 22653 22931
YP_009147493.1 NC_027339_p46 exclusion protein phrog_12654 RexA-like exclusion protein moron, auxiliary metabolic gene and host takeover -1 28831 29670
YP_009147453.1 NC_027339_p6 phage major capsid protein phrog_10 major head protein head and packaging 1 4353 5558
YP_009147507.1 NC_027339_p60 antiterminator Q protein phrog_943 anti-termination protein Q-like transcription regulation 1 35158 35646
YP_009147501.1 NC_027339_p54 recombination protein NinB phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 33200 33640
YP_009147482.1 NC_027339_p35 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 24423 25103
YP_009147473.1 NC_027339_p26 flippase phrog_2224 GtrA-like O-antigen conversion moron, auxiliary metabolic gene and host takeover -1 20667 21029
YP_009147490.1 NC_027339_p43 hypothetical protein phrog_1871 unknown function unknown function -1 27486 27623
YP_009147449.1 NC_027339_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 542 2275
YP_009147467.1 NC_027339_p20 hypothetical protein phrog_6 baseplate wedge subunit tail 1 15294 16352
YP_009147489.1 NC_027339_p42 hypothetical protein phrog_16060 unknown function unknown function -1 27345 27431
YP_009147478.1 NC_027339_p31 hypothetical protein singleton unknown function unknown function -1 23204 23293
YP_009147452.1 NC_027339_p5 phage pro-head protease phrog_80 head maturation protease head and packaging 1 3652 4338
YP_009147458.1 NC_027339_p11 hypothetical protein phrog_208 unknown function unknown function 1 7617 7787
YP_009147487.1 NC_027339_p40 single-stranded DNA binding protein phrog_646 unknown function unknown function -1 26611 26979
YP_009147469.1 NC_027339_p22 hypothetical protein phrog_1396 tail fiber protein tail 1 16931 17581
YP_009147457.1 NC_027339_p10 hypothetical protein phrog_209 portal protein head and packaging 1 7048 7608
YP_009147498.1 NC_027339_p51 replication protein P phrog_109 P-like helicase loader DNA, RNA and nucleotide metabolism 1 32138 32839
YP_009147455.1 NC_027339_p8 phage head-tail adaptor phrog_25 head closure Hc1 connector 1 6160 6570
YP_009147462.1 NC_027339_p15 tail protein phrog_28 tail length tape measure protein tail 1 10034 11869
YP_009147474.1 NC_027339_p27 phage integrase family site-specific recombinase phrog_1 integrase integration and excision -1 21291 22454
YP_009147510.1 NC_027339_p63 Rz protein phrog_13 Rz-like spanin lysis 1 36721 37164
YP_009147483.1 NC_027339_p36 phage recombination protein Bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 25100 25885
YP_009147495.1 NC_027339_p48 Cro protein phrog_35 transcriptional repressor transcription regulation 1 30597 30797
YP_009147448.1 NC_027339_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 51 545
YP_009147475.1 NC_027339_p28 excisionase phrog_2907 excisionase integration and excision -1 22331 22681
YP_009147497.1 NC_027339_p50 replication protein O phrog_277 replication initiation O-like DNA, RNA and nucleotide metabolism 1 31242 32141
YP_009147496.1 NC_027339_p49 cII protein phrog_191 CII-like transcriptional activator transcription regulation 1 30916 31209
YP_009147484.1 NC_027339_p37 host-nuclease inhibitor protein gam phrog_259 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 25891 26307
YP_009147471.1 NC_027339_p24 glycosyltransferase singleton unknown function unknown function -1 18227 19747
YP_009147503.1 NC_027339_p56 NinE phrog_288 unknown function unknown function 1 34161 34343