| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027345 |
Definition |
Pseudomonas phage Pa2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Litunavirus; unclassified Litunavirus. |
DB of origin |
REFSEQ |
Length |
73008 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
54.85 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009148249.1 | NC_027345_p69 | hypothetical protein | phrog_7891 | unknown function | unknown function | 1 | 44305 | 44622 |
| YP_009148186.1 | NC_027345_p6 | hypothetical protein | phrog_2614 | unknown function | unknown function | 1 | 1818 | 2126 |
| YP_009148198.1 | NC_027345_p18 | hypothetical protein | phrog_8585 | unknown function | unknown function | 1 | 5542 | 5892 |
| YP_009148219.1 | NC_027345_p39 | hypothetical protein | phrog_12945 | ferredoxin | moron, auxiliary metabolic gene and host takeover | 1 | 21128 | 21352 |
| YP_009148226.1 | NC_027345_p46 | hypothetical protein | phrog_7722 | unknown function | unknown function | 1 | 26901 | 27125 |
| YP_009148185.1 | NC_027345_p5 | hypothetical protein | phrog_7875 | unknown function | unknown function | 1 | 1563 | 1814 |
| YP_009148267.1 | NC_027345_p87 | hypothetical protein | phrog_8800 | unknown function | unknown function | 1 | 70444 | 70656 |
| YP_009148233.1 | NC_027345_p53 | hypothetical protein | phrog_7697 | tail fiber protein | tail | -1 | 29959 | 33168 |
| YP_009148188.1 | NC_027345_p8 | hypothetical protein | phrog_8477 | unknown function | unknown function | 1 | 2410 | 2613 |
| YP_009148222.1 | NC_027345_p42 | hypothetical protein | phrog_8620 | unknown function | unknown function | 1 | 21957 | 22355 |
| YP_009148256.1 | NC_027345_p76 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 60309 | 60974 |
| YP_009148239.1 | NC_027345_p59 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 36648 | 37658 |
| YP_009148238.1 | NC_027345_p58 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 36377 | 36646 |
| YP_009148192.1 | NC_027345_p12 | hypothetical protein | phrog_8570 | unknown function | unknown function | 1 | 3372 | 3557 |
| YP_009148262.1 | NC_027345_p82 | hypothetical protein | phrog_8880 | unknown function | unknown function | 1 | 66507 | 66806 |
| YP_009148251.1 | NC_027345_p71 | hypothetical protein | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 44851 | 55047 |
| YP_009148223.1 | NC_027345_p43 | hypothetical protein | phrog_10495 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22352 | 22543 |
| YP_009148255.1 | NC_027345_p75 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 59340 | 60305 |
| YP_009148252.1 | NC_027345_p72 | hypothetical protein | phrog_6467 | unknown function | unknown function | -1 | 55048 | 56613 |
| YP_009148261.1 | NC_027345_p81 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 66084 | 66503 |
| YP_009148237.1 | NC_027345_p57 | hypothetical protein | phrog_3360 | unknown function | unknown function | 1 | 35853 | 36281 |
| YP_009148257.1 | NC_027345_p77 | hypothetical protein | phrog_1357 | major head protein | head and packaging | -1 | 61031 | 62230 |
| YP_009148187.1 | NC_027345_p7 | hypothetical protein | phrog_8449 | unknown function | unknown function | 1 | 2110 | 2406 |
| YP_009148263.1 | NC_027345_p83 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 66838 | 67572 |
| YP_009148217.1 | NC_027345_p37 | hypothetical protein | phrog_7095 | unknown function | unknown function | 1 | 17989 | 18516 |
| YP_009148243.1 | NC_027345_p63 | hypothetical protein | phrog_6026 | unknown function | unknown function | 1 | 41401 | 41766 |
| YP_009148246.1 | NC_027345_p66 | hypothetical protein | phrog_7564 | unknown function | unknown function | 1 | 42766 | 43203 |
| YP_009148241.1 | NC_027345_p61 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39890 | 40624 |
| YP_009148230.1 | NC_027345_p50 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | -1 | 28380 | 28892 |
| YP_009148211.1 | NC_027345_p31 | hypothetical protein | phrog_8112 | unknown function | unknown function | 1 | 12587 | 12772 |
| YP_009148210.1 | NC_027345_p30 | hypothetical protein | phrog_12464 | unknown function | unknown function | 1 | 12119 | 12343 |
| YP_009148231.1 | NC_027345_p51 | hypothetical protein | phrog_3108 | unknown function | unknown function | -1 | 28889 | 29413 |
| YP_009148240.1 | NC_027345_p60 | DNA primase P4 type | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 37673 | 39841 |
| YP_009148218.1 | NC_027345_p38 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18516 | 21131 |
| YP_009148215.1 | NC_027345_p35 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15504 | 16733 |
| YP_009148248.1 | NC_027345_p68 | hypothetical protein | phrog_8394 | unknown function | unknown function | 1 | 44072 | 44308 |
| YP_009148193.1 | NC_027345_p13 | hypothetical protein | phrog_6271 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 3649 | 3939 |
| YP_009148268.1 | NC_027345_p88 | hypothetical protein | phrog_10651 | unknown function | unknown function | 1 | 70653 | 70913 |
| YP_009148229.1 | NC_027345_p49 | hypothetical protein | phrog_8796 | unknown function | unknown function | 1 | 27760 | 28317 |
| YP_009148247.1 | NC_027345_p67 | hypothetical protein | phrog_7212 | unknown function | unknown function | 1 | 43261 | 43665 |
| YP_009148205.1 | NC_027345_p25 | hypothetical protein | phrog_6140 | unknown function | unknown function | 1 | 9618 | 9842 |
| YP_009148190.1 | NC_027345_p10 | hypothetical protein | phrog_8334 | unknown function | unknown function | 1 | 2848 | 3081 |
| YP_009148208.1 | NC_027345_p28 | hypothetical protein | phrog_8451 | unknown function | unknown function | 1 | 11023 | 11604 |
| YP_009148181.1 | NC_027345_p1 | hypothetical protein | phrog_6483 | unknown function | unknown function | 1 | 200 | 454 |
| YP_009148227.1 | NC_027345_p47 | hypothetical protein | phrog_6854 | holin | lysis | 1 | 27209 | 27526 |
| YP_009148189.1 | NC_027345_p9 | hypothetical protein | phrog_8885 | unknown function | unknown function | 1 | 2633 | 2851 |
| YP_009148253.1 | NC_027345_p73 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 56613 | 57080 |
| YP_009148194.1 | NC_027345_p14 | hypothetical protein | phrog_8775 | unknown function | unknown function | 1 | 4124 | 4417 |
| YP_009148199.1 | NC_027345_p19 | RNA polymerase | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5904 | 6836 |
| YP_009148182.1 | NC_027345_p2 | hypothetical protein | phrog_7624 | unknown function | unknown function | 1 | 872 | 1063 |
| YP_009148264.1 | NC_027345_p84 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 67569 | 69221 |
| YP_009148271.1 | NC_027345_p91 | hypothetical protein | phrog_6483 | unknown function | unknown function | 1 | 72545 | 72799 |
| YP_009148259.1 | NC_027345_p79 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 63461 | 63799 |
| YP_009148250.1 | NC_027345_p70 | hypothetical protein | phrog_8152 | unknown function | unknown function | 1 | 44632 | 44835 |
| YP_009148224.1 | NC_027345_p44 | rIIA lysis inhibitor | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 22547 | 25063 |
| YP_009148216.1 | NC_027345_p36 | RecD-like DNA helicase YrrC | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 16823 | 17989 |
| YP_009148184.1 | NC_027345_p4 | hypothetical protein | phrog_3968 | unknown function | unknown function | 1 | 1321 | 1563 |
| YP_009148206.1 | NC_027345_p26 | hypothetical protein | phrog_7111 | unknown function | unknown function | 1 | 9846 | 10472 |
| YP_009148201.1 | NC_027345_p21 | hypothetical protein | phrog_8144 | unknown function | unknown function | 1 | 7400 | 7714 |
| YP_009148270.1 | NC_027345_p90 | hypothetical protein | phrog_8657 | unknown function | unknown function | 1 | 71418 | 72080 |
| YP_009148254.1 | NC_027345_p74 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 57061 | 59283 |
| YP_009148244.1 | NC_027345_p64 | hypothetical protein | phrog_3934 | unknown function | unknown function | 1 | 41763 | 42206 |
| YP_009148200.1 | NC_027345_p20 | hypothetical protein | phrog_8597 | unknown function | unknown function | 1 | 6849 | 7109 |
| YP_009148202.1 | NC_027345_p22 | hypothetical protein | phrog_8144 | unknown function | unknown function | 1 | 7747 | 8019 |
| YP_009148269.1 | NC_027345_p89 | hypothetical protein | phrog_9146 | unknown function | unknown function | 1 | 70904 | 71212 |
| YP_009148183.1 | NC_027345_p3 | hypothetical protein | phrog_3968 | unknown function | unknown function | 1 | 1082 | 1324 |
| YP_009148220.1 | NC_027345_p40 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 21312 | 21782 |
| YP_009148191.1 | NC_027345_p11 | hypothetical protein | phrog_8895 | unknown function | unknown function | 1 | 3078 | 3299 |
| YP_009148203.1 | NC_027345_p23 | hypothetical protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8054 | 9295 |
| YP_009148213.1 | NC_027345_p33 | hypothetical protein | phrog_4781 | unknown function | unknown function | 1 | 13630 | 13872 |
| YP_009148265.1 | NC_027345_p85 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 69218 | 69946 |
| YP_009148204.1 | NC_027345_p24 | hypothetical protein | phrog_8738 | unknown function | unknown function | 1 | 9393 | 9545 |
| YP_009148195.1 | NC_027345_p15 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 4417 | 4818 |
| YP_009148225.1 | NC_027345_p45 | hypothetical protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 25075 | 26853 |
| YP_009148207.1 | NC_027345_p27 | hypothetical protein | phrog_8613 | unknown function | unknown function | 1 | 10469 | 11023 |
| YP_009148235.1 | NC_027345_p55 | hypothetical protein | phrog_4047 | unknown function | unknown function | -1 | 33875 | 34174 |
| YP_009148245.1 | NC_027345_p65 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 42194 | 42754 |
| YP_009148221.1 | NC_027345_p41 | hypothetical protein | phrog_10189 | unknown function | unknown function | 1 | 21814 | 21954 |
| YP_009148214.1 | NC_027345_p34 | ATP/GTP binding protein | phrog_1297 | ATPase | other | 1 | 13904 | 14974 |
| YP_009148234.1 | NC_027345_p54 | hypothetical protein | phrog_3370 | unknown function | unknown function | -1 | 33207 | 33878 |
| YP_009148242.1 | NC_027345_p62 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40651 | 41397 |
| YP_009148236.1 | NC_027345_p56 | tail fiber protein | phrog_496 | tail fiber protein | tail | -1 | 34171 | 35484 |
| YP_009148212.1 | NC_027345_p32 | ATP-dependent Clp protease ATP-binding subunit ClpX | phrog_5534 | unknown function | unknown function | 1 | 12800 | 13633 |
| YP_009148232.1 | NC_027345_p52 | hypothetical protein | phrog_2687 | unknown function | unknown function | -1 | 29410 | 29652 |
| YP_009148209.1 | NC_027345_p29 | hypothetical protein | phrog_8374 | unknown function | unknown function | 1 | 11604 | 12122 |
| YP_009148258.1 | NC_027345_p78 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 62265 | 63461 |
| YP_009148266.1 | NC_027345_p86 | hypothetical protein | phrog_9047 | unknown function | unknown function | 1 | 70013 | 70444 |
| YP_009148228.1 | NC_027345_p48 | hypothetical protein | phrog_8307 | unknown function | unknown function | 1 | 27576 | 27767 |
| YP_009148196.1 | NC_027345_p16 | hypothetical protein | phrog_7756 | unknown function | unknown function | 1 | 4818 | 5069 |
| YP_009148197.1 | NC_027345_p17 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 5069 | 5509 |
| YP_009148260.1 | NC_027345_p80 | hypothetical protein | phrog_1216 | portal protein | head and packaging | -1 | 63869 | 66049 |