| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027348 |
Definition |
Delftia phage RG-2014, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
73882 |
Host Name |
Delftia tsuruhatensis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
88 |
%GC |
59.88 |
Number of singletons |
41 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009148422.1 | NC_027348_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35359 | 35544 |
| YP_009148368.1 | NC_027348_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2355 | 2702 |
| YP_009148412.1 | NC_027348_p49 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 23623 | 24933 |
| YP_009148418.1 | NC_027348_p55 | DNA primase | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 30432 | 32606 |
| YP_009148378.1 | NC_027348_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5987 | 6256 |
| YP_009148366.1 | NC_027348_p4 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 1539 | 1907 |
| YP_009148367.1 | NC_027348_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2015 | 2344 |
| YP_009148432.1 | NC_027348_p69 | lysozyme-like domain vision structural protein | phrog_6126 | virion structural protein | head and packaging | -1 | 49436 | 51574 |
| YP_009148393.1 | NC_027348_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13309 | 13656 |
| YP_009148392.1 | NC_027348_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12916 | 13158 |
| YP_009148425.1 | NC_027348_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36476 | 36784 |
| YP_009148417.2 | NC_027348_p54 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29448 | 30431 |
| YP_009148450.1 | NC_027348_p87 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 71437 | 72123 |
| YP_009148387.1 | NC_027348_p24 | virion decoration protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 10717 | 11262 |
| YP_009148436.1 | NC_027348_p73 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 55753 | 56550 |
| YP_009148382.2 | NC_027348_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7034 | 7615 |
| YP_009148430.1 | NC_027348_p67 | hypothetical protein | phrog_18088 | unknown function | unknown function | 1 | 38441 | 38959 |
| YP_009148413.1 | NC_027348_p50 | hypothetical protein | phrog_4881 | unknown function | unknown function | 1 | 24943 | 25461 |
| YP_009351922.1 | NC_027348_p45 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 21047 | 22000 |
| YP_009351923.1 | NC_027348_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36784 | 36963 |
| YP_009148373.1 | NC_027348_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3547 | 3756 |
| YP_009148404.1 | NC_027348_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19627 | 20136 |
| YP_009148405.1 | NC_027348_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20133 | 20498 |
| YP_009148395.1 | NC_027348_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14384 | 15013 |
| YP_009148444.2 | NC_027348_p81 | hypothetical protein | phrog_5211 | unknown function | unknown function | -1 | 62895 | 63221 |
| YP_009148437.1 | NC_027348_p74 | major capsid protein | phrog_1357 | major head protein | head and packaging | -1 | 56612 | 57847 |
| YP_009148403.1 | NC_027348_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19203 | 19625 |
| YP_009148440.1 | NC_027348_p77 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 59076 | 59492 |
| YP_009148388.1 | NC_027348_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11362 | 11835 |
| YP_009148424.2 | NC_027348_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35765 | 36472 |
| YP_009148441.1 | NC_027348_p78 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 59505 | 61805 |
| YP_009148400.1 | NC_027348_p37 | dCTP deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | 1 | 17992 | 18504 |
| YP_009148435.1 | NC_027348_p72 | virion structural protein | phrog_2050 | virion structural protein | head and packaging | -1 | 54782 | 55684 |
| YP_009148372.1 | NC_027348_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3398 | 3550 |
| YP_009148386.1 | NC_027348_p23 | RNA polymerase II subunit | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9361 | 10659 |
| YP_009148433.1 | NC_027348_p70 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 51584 | 51991 |
| YP_009148442.1 | NC_027348_p79 | lysis/ Rz-like spanin | phrog_6197 | Rz-like spanin | lysis | -1 | 61789 | 62301 |
| YP_009148383.1 | NC_027348_p20 | hypothetical protein | phrog_7644 | unknown function | unknown function | 1 | 7615 | 7845 |
| YP_009148447.2 | NC_027348_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 68700 | 69122 |
| YP_009148397.1 | NC_027348_p34 | hypothetical protein | phrog_25384 | unknown function | unknown function | 1 | 16096 | 16479 |
| YP_009148428.1 | NC_027348_p65 | transcriptional regulator | singleton | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 37249 | 38115 |
| YP_009148389.1 | NC_027348_p26 | hypothetical protein | phrog_8421 | unknown function | unknown function | 1 | 11819 | 12286 |
| YP_009148438.1 | NC_027348_p75 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 57868 | 58713 |
| YP_009148445.1 | NC_027348_p82 | hypothetical protein | phrog_16150 | tail assembly protein | tail | -1 | 63267 | 64517 |
| YP_009148449.1 | NC_027348_p86 | large terminase subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 69834 | 71444 |
| YP_009148416.1 | NC_027348_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28565 | 29425 |
| YP_009148421.1 | NC_027348_p58 | hypothetical protein | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34241 | 35359 |
| YP_009148399.1 | NC_027348_p36 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16765 | 17982 |
| YP_009148451.1 | NC_027348_p88 | hypothetical protein | phrog_3934 | unknown function | unknown function | -1 | 72178 | 73200 |
| YP_009148439.1 | NC_027348_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 58713 | 59063 |
| YP_009148364.1 | NC_027348_p2 | hypothetical protein | phrog_4099 | unknown function | unknown function | 1 | 680 | 1099 |
| YP_009148407.1 | NC_027348_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20842 | 21063 |
| YP_009148384.1 | NC_027348_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7820 | 8473 |
| YP_009148371.1 | NC_027348_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3084 | 3401 |
| YP_009148385.1 | NC_027348_p22 | RNA polymerase I subunit | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8518 | 9336 |
| YP_009148369.2 | NC_027348_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2743 | 3057 |
| YP_009148398.1 | NC_027348_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16476 | 16754 |
| YP_009148375.1 | NC_027348_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4407 | 5264 |
| YP_009148409.1 | NC_027348_p46 | hypothetical protein | phrog_6377 | unknown function | unknown function | 1 | 22237 | 22551 |
| YP_009148365.1 | NC_027348_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1177 | 1542 |
| YP_009148394.1 | NC_027348_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13653 | 14381 |
| YP_009148423.1 | NC_027348_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35575 | 35772 |
| YP_009148376.1 | NC_027348_p13 | hypothetical protein | phrog_2510 | unknown function | unknown function | 1 | 5261 | 5587 |
| YP_009148363.2 | NC_027348_p1 | hypothetical protein | phrog_5020 | unknown function | unknown function | 1 | 214 | 519 |
| YP_009351921.1 | NC_027348_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20531 | 20842 |
| YP_009148414.1 | NC_027348_p51 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 25473 | 28127 |
| YP_009148379.1 | NC_027348_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6256 | 6390 |
| YP_009148429.1 | NC_027348_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38112 | 38444 |
| YP_009148390.1 | NC_027348_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12283 | 12651 |
| YP_009148410.1 | NC_027348_p47 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 22548 | 22955 |
| YP_009148443.1 | NC_027348_p80 | lysis/N-acetlymuramidase | phrog_315 | endolysin | lysis | -1 | 62282 | 62887 |
| YP_009148396.1 | NC_027348_p33 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 15024 | 16103 |
| YP_009148434.1 | NC_027348_p71 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 52004 | 54769 |
| YP_009148415.1 | NC_027348_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28179 | 28562 |
| YP_009148380.1 | NC_027348_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6374 | 6607 |
| YP_009148391.1 | NC_027348_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12668 | 12916 |
| YP_009148402.1 | NC_027348_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18826 | 19200 |
| YP_009148401.1 | NC_027348_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18501 | 18737 |
| YP_009148377.1 | NC_027348_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5580 | 5993 |
| YP_009148427.1 | NC_027348_p64 | hypothetical protein | phrog_1048 | unknown function | unknown function | 1 | 36956 | 37252 |
| YP_009148374.1 | NC_027348_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3753 | 4313 |
| YP_009148381.1 | NC_027348_p18 | hypothetical protein | phrog_9995 | unknown function | unknown function | 1 | 6604 | 7032 |
| YP_009148420.1 | NC_027348_p57 | single stranded DNA-binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33476 | 34237 |
| YP_009148448.1 | NC_027348_p85 | virion appendage protein | phrog_2125 | virion structural protein | head and packaging | -1 | 69119 | 69823 |
| YP_009148411.1 | NC_027348_p48 | nucleotide pyrophosphate hydrolase | phrog_229 | MazG-like pyrophosphatase | other | 1 | 22974 | 23567 |
| YP_009148419.1 | NC_027348_p56 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32673 | 33422 |
| YP_009148446.1 | NC_027348_p83 | tail sheath and receptor binding vision protein | phrog_15324 | tail sheath and receptor binding protein | tail | -1 | 64553 | 68719 |
| YP_009148431.1 | NC_027348_p68 | virion RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 39107 | 49348 |