Genomic map of Delftia phage RG-2014 (NC_027348)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027348
Definition
Delftia phage RG-2014, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
73882
Host Name
Delftia tsuruhatensis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
88
%GC
59.88
Number of singletons
41
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009148422.1 NC_027348_p59 hypothetical protein singleton unknown function unknown function 1 35359 35544
YP_009148368.1 NC_027348_p6 hypothetical protein singleton unknown function unknown function 1 2355 2702
YP_009148412.1 NC_027348_p49 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 23623 24933
YP_009148418.1 NC_027348_p55 DNA primase phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 30432 32606
YP_009148378.1 NC_027348_p15 hypothetical protein singleton unknown function unknown function 1 5987 6256
YP_009148366.1 NC_027348_p4 hypothetical protein phrog_2072 unknown function unknown function 1 1539 1907
YP_009148367.1 NC_027348_p5 hypothetical protein singleton unknown function unknown function 1 2015 2344
YP_009148432.1 NC_027348_p69 lysozyme-like domain vision structural protein phrog_6126 virion structural protein head and packaging -1 49436 51574
YP_009148393.1 NC_027348_p30 hypothetical protein singleton unknown function unknown function 1 13309 13656
YP_009148392.1 NC_027348_p29 hypothetical protein singleton unknown function unknown function 1 12916 13158
YP_009148425.1 NC_027348_p62 hypothetical protein singleton unknown function unknown function 1 36476 36784
YP_009148417.2 NC_027348_p54 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 29448 30431
YP_009148450.1 NC_027348_p87 hypothetical protein phrog_2109 unknown function unknown function -1 71437 72123
YP_009148387.1 NC_027348_p24 virion decoration protein phrog_215 structural protein with Ig domain head and packaging 1 10717 11262
YP_009148436.1 NC_027348_p73 hypothetical protein phrog_2130 unknown function unknown function -1 55753 56550
YP_009148382.2 NC_027348_p19 hypothetical protein singleton unknown function unknown function 1 7034 7615
YP_009148430.1 NC_027348_p67 hypothetical protein phrog_18088 unknown function unknown function 1 38441 38959
YP_009148413.1 NC_027348_p50 hypothetical protein phrog_4881 unknown function unknown function 1 24943 25461
YP_009351922.1 NC_027348_p45 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 21047 22000
YP_009351923.1 NC_027348_p63 hypothetical protein singleton unknown function unknown function 1 36784 36963
YP_009148373.1 NC_027348_p10 hypothetical protein singleton unknown function unknown function 1 3547 3756
YP_009148404.1 NC_027348_p41 hypothetical protein singleton unknown function unknown function 1 19627 20136
YP_009148405.1 NC_027348_p42 hypothetical protein singleton unknown function unknown function 1 20133 20498
YP_009148395.1 NC_027348_p32 hypothetical protein singleton unknown function unknown function 1 14384 15013
YP_009148444.2 NC_027348_p81 hypothetical protein phrog_5211 unknown function unknown function -1 62895 63221
YP_009148437.1 NC_027348_p74 major capsid protein phrog_1357 major head protein head and packaging -1 56612 57847
YP_009148403.1 NC_027348_p40 hypothetical protein singleton unknown function unknown function 1 19203 19625
YP_009148440.1 NC_027348_p77 hypothetical protein phrog_2346 unknown function unknown function -1 59076 59492
YP_009148388.1 NC_027348_p25 hypothetical protein singleton unknown function unknown function 1 11362 11835
YP_009148424.2 NC_027348_p61 hypothetical protein singleton unknown function unknown function 1 35765 36472
YP_009148441.1 NC_027348_p78 portal protein phrog_1216 portal protein head and packaging -1 59505 61805
YP_009148400.1 NC_027348_p37 dCTP deaminase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism 1 17992 18504
YP_009148435.1 NC_027348_p72 virion structural protein phrog_2050 virion structural protein head and packaging -1 54782 55684
YP_009148372.1 NC_027348_p9 hypothetical protein singleton unknown function unknown function 1 3398 3550
YP_009148386.1 NC_027348_p23 RNA polymerase II subunit phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 9361 10659
YP_009148433.1 NC_027348_p70 hypothetical protein phrog_2646 unknown function unknown function -1 51584 51991
YP_009148442.1 NC_027348_p79 lysis/ Rz-like spanin phrog_6197 Rz-like spanin lysis -1 61789 62301
YP_009148383.1 NC_027348_p20 hypothetical protein phrog_7644 unknown function unknown function 1 7615 7845
YP_009148447.2 NC_027348_p84 hypothetical protein singleton unknown function unknown function -1 68700 69122
YP_009148397.1 NC_027348_p34 hypothetical protein phrog_25384 unknown function unknown function 1 16096 16479
YP_009148428.1 NC_027348_p65 transcriptional regulator singleton ParB-like partition protein DNA, RNA and nucleotide metabolism 1 37249 38115
YP_009148389.1 NC_027348_p26 hypothetical protein phrog_8421 unknown function unknown function 1 11819 12286
YP_009148438.1 NC_027348_p75 hypothetical protein phrog_2120 tail length tape measure protein tail -1 57868 58713
YP_009148445.1 NC_027348_p82 hypothetical protein phrog_16150 tail assembly protein tail -1 63267 64517
YP_009148449.1 NC_027348_p86 large terminase subunit phrog_38 terminase large subunit head and packaging -1 69834 71444
YP_009148416.1 NC_027348_p53 hypothetical protein singleton unknown function unknown function 1 28565 29425
YP_009148421.1 NC_027348_p58 hypothetical protein phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 34241 35359
YP_009148399.1 NC_027348_p36 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16765 17982
YP_009148451.1 NC_027348_p88 hypothetical protein phrog_3934 unknown function unknown function -1 72178 73200
YP_009148439.1 NC_027348_p76 hypothetical protein singleton unknown function unknown function -1 58713 59063
YP_009148364.1 NC_027348_p2 hypothetical protein phrog_4099 unknown function unknown function 1 680 1099
YP_009148407.1 NC_027348_p44 hypothetical protein singleton unknown function unknown function 1 20842 21063
YP_009148384.1 NC_027348_p21 hypothetical protein singleton unknown function unknown function 1 7820 8473
YP_009148371.1 NC_027348_p8 hypothetical protein singleton unknown function unknown function 1 3084 3401
YP_009148385.1 NC_027348_p22 RNA polymerase I subunit phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 8518 9336
YP_009148369.2 NC_027348_p7 hypothetical protein singleton unknown function unknown function -1 2743 3057
YP_009148398.1 NC_027348_p35 hypothetical protein singleton unknown function unknown function 1 16476 16754
YP_009148375.1 NC_027348_p12 hypothetical protein singleton unknown function unknown function 1 4407 5264
YP_009148409.1 NC_027348_p46 hypothetical protein phrog_6377 unknown function unknown function 1 22237 22551
YP_009148365.1 NC_027348_p3 hypothetical protein singleton unknown function unknown function 1 1177 1542
YP_009148394.1 NC_027348_p31 hypothetical protein singleton unknown function unknown function 1 13653 14381
YP_009148423.1 NC_027348_p60 hypothetical protein singleton unknown function unknown function 1 35575 35772
YP_009148376.1 NC_027348_p13 hypothetical protein phrog_2510 unknown function unknown function 1 5261 5587
YP_009148363.2 NC_027348_p1 hypothetical protein phrog_5020 unknown function unknown function 1 214 519
YP_009351921.1 NC_027348_p43 hypothetical protein singleton unknown function unknown function 1 20531 20842
YP_009148414.1 NC_027348_p51 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 25473 28127
YP_009148379.1 NC_027348_p16 hypothetical protein singleton unknown function unknown function 1 6256 6390
YP_009148429.1 NC_027348_p66 hypothetical protein singleton unknown function unknown function 1 38112 38444
YP_009148390.1 NC_027348_p27 hypothetical protein singleton unknown function unknown function 1 12283 12651
YP_009148410.1 NC_027348_p47 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 22548 22955
YP_009148443.1 NC_027348_p80 lysis/N-acetlymuramidase phrog_315 endolysin lysis -1 62282 62887
YP_009148396.1 NC_027348_p33 hypothetical protein phrog_1297 ATPase other 1 15024 16103
YP_009148434.1 NC_027348_p71 hypothetical protein phrog_2220 unknown function unknown function -1 52004 54769
YP_009148415.1 NC_027348_p52 hypothetical protein singleton unknown function unknown function 1 28179 28562
YP_009148380.1 NC_027348_p17 hypothetical protein singleton unknown function unknown function 1 6374 6607
YP_009148391.1 NC_027348_p28 hypothetical protein singleton unknown function unknown function 1 12668 12916
YP_009148402.1 NC_027348_p39 hypothetical protein singleton unknown function unknown function 1 18826 19200
YP_009148401.1 NC_027348_p38 hypothetical protein singleton unknown function unknown function 1 18501 18737
YP_009148377.1 NC_027348_p14 hypothetical protein singleton unknown function unknown function 1 5580 5993
YP_009148427.1 NC_027348_p64 hypothetical protein phrog_1048 unknown function unknown function 1 36956 37252
YP_009148374.1 NC_027348_p11 hypothetical protein singleton unknown function unknown function 1 3753 4313
YP_009148381.1 NC_027348_p18 hypothetical protein phrog_9995 unknown function unknown function 1 6604 7032
YP_009148420.1 NC_027348_p57 single stranded DNA-binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 33476 34237
YP_009148448.1 NC_027348_p85 virion appendage protein phrog_2125 virion structural protein head and packaging -1 69119 69823
YP_009148411.1 NC_027348_p48 nucleotide pyrophosphate hydrolase phrog_229 MazG-like pyrophosphatase other 1 22974 23567
YP_009148419.1 NC_027348_p56 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32673 33422
YP_009148446.1 NC_027348_p83 tail sheath and receptor binding vision protein phrog_15324 tail sheath and receptor binding protein tail -1 64553 68719
YP_009148431.1 NC_027348_p68 virion RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 39107 49348