| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027371 |
Definition |
Propionibacterium phage Pacnes 2012-15, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus. |
DB of origin |
REFSEQ |
Length |
29741 |
Host Name |
Propionibacterium acnes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
54.42 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009151450.1 | NC_027371_p27 | collagen-like surface protein | phrog_1806 | collagen like minor tail | tail | -1 | 14277 | 15119 |
| YP_009151439.1 | NC_027371_p16 | hypothetical protein | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 8588 | 9259 |
| YP_009151461.1 | NC_027371_p38 | hypothetical protein | phrog_501 | head closure Hc1 | connector | -1 | 23248 | 23595 |
| YP_009151438.1 | NC_027371_p15 | hypothetical protein | phrog_11072 | unknown function | unknown function | 1 | 8235 | 8390 |
| YP_009151467.1 | NC_027371_p44 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | -1 | 27816 | 29327 |
| YP_009151430.1 | NC_027371_p7 | hypothetical protein | phrog_1884 | unknown function | unknown function | 1 | 4404 | 4655 |
| YP_009151442.1 | NC_027371_p19 | hypothetical protein | phrog_1923 | unknown function | unknown function | 1 | 10115 | 10300 |
| YP_009151448.1 | NC_027371_p25 | hypothetical protein | phrog_443 | holin | lysis | -1 | 12953 | 13354 |
| YP_009151432.1 | NC_027371_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4809 | 4940 |
| YP_009151457.1 | NC_027371_p34 | hypothetical protein | phrog_1927 | tail assembly chaperone | tail | -1 | 21567 | 21818 |
| YP_009151465.1 | NC_027371_p42 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | -1 | 25735 | 26490 |
| YP_009151424.1 | NC_027371_p1 | HNH endonuclease family protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 52 | 354 |
| YP_009151441.1 | NC_027371_p18 | hypothetical protein | phrog_5969 | unknown function | unknown function | 1 | 9916 | 10131 |
| YP_009151428.1 | NC_027371_p5 | hypothetical protein | phrog_7707 | unknown function | unknown function | 1 | 3588 | 3737 |
| YP_009151434.1 | NC_027371_p11 | hypothetical protein | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 5298 | 6218 |
| YP_009151443.1 | NC_027371_p20 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 10297 | 11340 |
| YP_009151425.1 | NC_027371_p2 | hypothetical protein | phrog_919 | unknown function | unknown function | 1 | 2692 | 3000 |
| YP_009151440.1 | NC_027371_p17 | hypothetical protein | phrog_1881 | unknown function | unknown function | 1 | 9304 | 9861 |
| YP_009151445.1 | NC_027371_p22 | hypothetical protein | phrog_1947 | unknown function | unknown function | 1 | 11684 | 11968 |
| YP_009151435.1 | NC_027371_p12 | hypothetical protein | phrog_1890 | unknown function | unknown function | 1 | 6221 | 6625 |
| YP_009151449.1 | NC_027371_p26 | negative regulator of beta-lactamase expression | phrog_670 | endolysin | lysis | -1 | 13364 | 14221 |
| YP_009151429.1 | NC_027371_p6 | hypothetical protein | phrog_1908 | unknown function | unknown function | 1 | 3855 | 4394 |
| YP_009151453.1 | NC_027371_p30 | hypothetical protein | phrog_110 | minor tail protein | tail | -1 | 16278 | 17435 |
| YP_009151433.1 | NC_027371_p10 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 4939 | 5298 |
| YP_009151427.1 | NC_027371_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3416 | 3568 |
| YP_009151466.1 | NC_027371_p43 | capsid and scaffold protein | phrog_104 | portal protein | head and packaging | -1 | 26494 | 27819 |
| YP_009151436.1 | NC_027371_p13 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 6665 | 7129 |
| YP_009151460.1 | NC_027371_p37 | hypothetical protein | phrog_387 | neck protein | connector | -1 | 22951 | 23241 |
| YP_009151463.1 | NC_027371_p40 | major capsid protein | phrog_10 | major head protein | head and packaging | -1 | 24102 | 25073 |
| YP_009151446.1 | NC_027371_p23 | hypothetical protein | phrog_1729 | unknown function | unknown function | 1 | 11972 | 12364 |
| YP_009151431.1 | NC_027371_p8 | hypothetical protein | phrog_1937 | unknown function | unknown function | 1 | 4627 | 4833 |
| YP_009151451.1 | NC_027371_p28 | hypothetical protein | phrog_1958 | minor tail protein | tail | -1 | 15123 | 15386 |
| YP_009151458.1 | NC_027371_p35 | hypothetical protein | phrog_117 | major tail protein | tail | -1 | 21890 | 22522 |
| YP_009151437.1 | NC_027371_p14 | hypothetical protein | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 7294 | 8124 |
| YP_009151426.1 | NC_027371_p3 | hypothetical protein | phrog_919 | unknown function | unknown function | 1 | 3049 | 3357 |
| YP_009151464.1 | NC_027371_p41 | capsid and scaffold protein | phrog_1879 | head scaffolding protein | head and packaging | -1 | 25080 | 25631 |
| YP_009151455.1 | NC_027371_p32 | capsid and scaffold protein | phrog_58 | tail length tape measure protein | tail | -1 | 18408 | 21173 |
| YP_009151454.1 | NC_027371_p31 | hypothetical protein | phrog_106 | minor tail protein | tail | -1 | 17443 | 18390 |
| YP_009151452.1 | NC_027371_p29 | hypothetical protein | phrog_1910 | lectin | other | -1 | 15443 | 16261 |
| YP_009151462.1 | NC_027371_p39 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | -1 | 23597 | 24076 |
| YP_009151468.1 | NC_027371_p45 | hypothetical protein | phrog_1897 | terminase small subunit | head and packaging | -1 | 29332 | 29694 |
| YP_009151447.1 | NC_027371_p24 | hypothetical protein | phrog_2092 | unknown function | unknown function | 1 | 12369 | 12860 |
| YP_009151459.1 | NC_027371_p36 | hypothetical protein | phrog_1892 | minor tail protein | tail | -1 | 22583 | 22915 |
| YP_009151456.1 | NC_027371_p33 | hypothetical protein | phrog_3166 | unknown function | unknown function | -1 | 21181 | 21468 |
| YP_009151444.1 | NC_027371_p21 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 11351 | 11671 |