| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027375 |
Definition |
Pseudomonas phage vB_PaeP_PPA-ABTNL, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus ABTNL. |
DB of origin |
REFSEQ |
Length |
43227 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
62.44 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009151806.1 | NC_027375_p6 | hypothetical protein | phrog_6951 | unknown function | unknown function | 1 | 3180 | 3548 |
| YP_009151854.1 | NC_027375_p54 | minor structural protein | phrog_7171 | minor head protein | head and packaging | 1 | 42428 | 42622 |
| YP_009151809.1 | NC_027375_p9 | hypothetical protein | phrog_8496 | unknown function | unknown function | 1 | 3941 | 4120 |
| YP_009151848.1 | NC_027375_p48 | terminase small subunit A | phrog_891 | terminase small subunit | head and packaging | 1 | 38892 | 39197 |
| YP_009151851.1 | NC_027375_p51 | endolysin | phrog_7 | endolysin | lysis | 1 | 41205 | 41687 |
| YP_009151842.1 | NC_027375_p42 | internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29527 | 32223 |
| YP_009151852.1 | NC_027375_p52 | hypothetical protein | phrog_214 | Rz-like spanin | lysis | 1 | 41645 | 41974 |
| YP_009151819.1 | NC_027375_p19 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8480 | 9748 |
| YP_009151844.1 | NC_027375_p44 | tail fiber | phrog_6953 | tail fiber protein | tail | 1 | 36242 | 36997 |
| YP_009151849.1 | NC_027375_p49 | terminase large subunit B | phrog_38 | terminase large subunit | head and packaging | 1 | 39206 | 41011 |
| YP_009151845.1 | NC_027375_p45 | hypothetical protein | phrog_17567 | unknown function | unknown function | 1 | 36997 | 37437 |
| YP_009151807.1 | NC_027375_p7 | hypothetical protein | phrog_7027 | unknown function | unknown function | 1 | 3535 | 3762 |
| YP_009151810.1 | NC_027375_p10 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4120 | 4413 |
| YP_009151850.1 | NC_027375_p50 | holin | phrog_6597 | holin | lysis | 1 | 41008 | 41208 |
| YP_009151820.1 | NC_027375_p20 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9738 | 10358 |
| YP_009151839.1 | NC_027375_p39 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25945 | 26499 |
| YP_009151830.1 | NC_027375_p30 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 18134 | 18508 |
| YP_009151837.1 | NC_027375_p37 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23820 | 24788 |
| YP_009151822.1 | NC_027375_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11356 | 11565 |
| YP_009151853.1 | NC_027375_p53 | minor structural protein | phrog_6908 | minor head protein | head and packaging | 1 | 42064 | 42378 |
| YP_009151829.1 | NC_027375_p29 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 17078 | 18124 |
| YP_009151821.1 | NC_027375_p21 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 10358 | 11302 |
| YP_009151828.1 | NC_027375_p28 | endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16641 | 17081 |
| YP_009151833.1 | NC_027375_p33 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 21334 | 21558 |
| YP_009151826.1 | NC_027375_p26 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14661 | 15710 |
| YP_009151812.1 | NC_027375_p12 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4664 | 4957 |
| YP_009151802.1 | NC_027375_p2 | hypothetical protein | phrog_7124 | unknown function | unknown function | 1 | 2033 | 2260 |
| YP_009151804.1 | NC_027375_p4 | hypothetical protein | phrog_18183 | unknown function | unknown function | 1 | 2875 | 2979 |
| YP_009151825.1 | NC_027375_p25 | hypothetical protein | phrog_5437 | unknown function | unknown function | 1 | 14295 | 14606 |
| YP_009151840.1 | NC_027375_p40 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26502 | 28982 |
| YP_009151817.1 | NC_027375_p17 | hypothetical protein | phrog_9768 | unknown function | unknown function | 1 | 7494 | 7619 |
| YP_009151801.1 | NC_027375_p1 | hypothetical protein | phrog_5722 | unknown function | unknown function | 1 | 1749 | 2033 |
| YP_009151808.1 | NC_027375_p8 | hypothetical protein | phrog_21702 | unknown function | unknown function | 1 | 3828 | 3944 |
| YP_009151815.1 | NC_027375_p15 | DNA-binding protein | phrog_6982 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5883 | 6692 |
| YP_009151813.1 | NC_027375_p13 | hypothetical protein | phrog_5433 | unknown function | unknown function | 1 | 5036 | 5452 |
| YP_009151824.1 | NC_027375_p24 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11875 | 14298 |
| YP_009151847.1 | NC_027375_p47 | hypothetical protein | phrog_4950 | tail fiber protein | tail | 1 | 38302 | 38892 |
| YP_009151835.1 | NC_027375_p35 | hypothetical protein | phrog_3112 | virion structural protein | head and packaging | 1 | 21997 | 22272 |
| YP_009151805.1 | NC_027375_p5 | hypothetical protein | phrog_12691 | unknown function | unknown function | 1 | 2982 | 3101 |
| YP_009151818.1 | NC_027375_p18 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7687 | 8511 |
| YP_009151834.1 | NC_027375_p34 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 21558 | 22031 |
| YP_009151823.1 | NC_027375_p23 | hypothetical protein | phrog_7292 | unknown function | unknown function | 1 | 11549 | 11878 |
| YP_009151816.1 | NC_027375_p16 | hypothetical protein | phrog_2563 | unknown function | unknown function | 1 | 6962 | 7501 |
| YP_009151814.1 | NC_027375_p14 | hypothetical protein | phrog_6915 | unknown function | unknown function | 1 | 5521 | 5880 |
| YP_009151811.1 | NC_027375_p11 | hypothetical protein | phrog_4955 | unknown function | unknown function | 1 | 4410 | 4646 |
| YP_009151803.1 | NC_027375_p3 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2270 | 2809 |
| YP_009151836.1 | NC_027375_p36 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 22284 | 23816 |
| YP_009151827.1 | NC_027375_p27 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15710 | 16651 |
| YP_009151838.1 | NC_027375_p38 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24841 | 25848 |
| YP_009151841.1 | NC_027375_p41 | internal virion protein | phrog_805 | internal virion protein | head and packaging | 1 | 28982 | 29527 |
| YP_009151831.1 | NC_027375_p31 | hypothetical protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 18498 | 18662 |
| YP_009151843.1 | NC_027375_p43 | internal core protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32227 | 36240 |
| YP_009151832.1 | NC_027375_p32 | DNA-dependent RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18671 | 21118 |
| YP_009151846.1 | NC_027375_p46 | tail fiber | phrog_4176 | tail fiber protein | tail | 1 | 37427 | 38305 |