| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027378 |
Definition |
Escherichia phage Seurat, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Seuratvirus. |
DB of origin |
REFSEQ |
Length |
56776 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
88 |
%GC |
44.57 |
Number of singletons |
7 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009151995.1 | NC_027378_p51 | RNaseH | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 38278 | 38940 |
| YP_009151961.1 | NC_027378_p17 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 14344 | 14928 |
| YP_009151994.1 | NC_027378_p50 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 37374 | 38288 |
| YP_009151979.1 | NC_027378_p35 | queuosine biosynthesis protein FolE | phrog_2197 | GTP cyclohydrolase | other | -1 | 26804 | 27412 |
| YP_009152000.1 | NC_027378_p56 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 41308 | 41775 |
| YP_009151971.1 | NC_027378_p27 | hypothetical protein | phrog_22730 | unknown function | unknown function | -1 | 21843 | 22049 |
| YP_009151965.1 | NC_027378_p21 | tail fiber protein | phrog_4128 | tail fiber protein | tail | 1 | 18810 | 20618 |
| YP_009151976.1 | NC_027378_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25439 | 25609 |
| YP_009151985.1 | NC_027378_p41 | hypothetical protein | phrog_26258 | radical SAM domain-containing protein | other | -1 | 30017 | 30229 |
| YP_009151987.1 | NC_027378_p43 | queuosine biosynthesis protein QueE | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 30484 | 31191 |
| YP_009151992.1 | NC_027378_p48 | hypothetical protein | phrog_13350 | unknown function | unknown function | -1 | 35699 | 36580 |
| YP_009151945.1 | NC_027378_p1 | TerS | phrog_5334 | terminase small subunit | head and packaging | 1 | 184 | 741 |
| YP_009152011.1 | NC_027378_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49557 | 49706 |
| YP_009152019.1 | NC_027378_p75 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 51682 | 51978 |
| YP_009151997.1 | NC_027378_p53 | hypothetical protein | phrog_27666 | unknown function | unknown function | -1 | 39226 | 40017 |
| YP_009152006.1 | NC_027378_p62 | hypothetical protein | phrog_27223 | unknown function | unknown function | -1 | 45811 | 46593 |
| YP_009151972.1 | NC_027378_p28 | hypothetical protein | phrog_23744 | unknown function | unknown function | -1 | 22082 | 22375 |
| YP_009151982.1 | NC_027378_p38 | hypothetical protein | phrog_4899 | unknown function | unknown function | -1 | 28527 | 29006 |
| YP_009151975.1 | NC_027378_p31 | DNA polymerase beta submunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 24709 | 25449 |
| YP_009152004.1 | NC_027378_p60 | primase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 43197 | 45539 |
| YP_009151983.1 | NC_027378_p39 | queuosine biosynthesis protein QueC | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 29127 | 29834 |
| YP_009151960.1 | NC_027378_p16 | hypothetical protein | phrog_1302 | distal tail protein | tail | 1 | 13760 | 14344 |
| YP_009151954.1 | NC_027378_p10 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 8031 | 8438 |
| YP_009152026.1 | NC_027378_p82 | hypothetical protein | phrog_4049 | unknown function | unknown function | 1 | 54023 | 54448 |
| YP_009152031.1 | NC_027378_p87 | hypothetical protein | phrog_785 | holin | lysis | 1 | 55975 | 56319 |
| YP_009151955.1 | NC_027378_p11 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 8438 | 8887 |
| YP_009152028.1 | NC_027378_p84 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 54693 | 55157 |
| YP_009152025.1 | NC_027378_p81 | hypothetical protein | phrog_25149 | unknown function | unknown function | 1 | 53551 | 54021 |
| YP_009151951.1 | NC_027378_p7 | hypothetical protein | phrog_10966 | unknown function | unknown function | 1 | 6349 | 7002 |
| YP_009151962.1 | NC_027378_p18 | hypothetical protein | phrog_2134 | unknown function | unknown function | 1 | 14921 | 15337 |
| YP_009152016.1 | NC_027378_p72 | hypothetical protein | phrog_28969 | unknown function | unknown function | 1 | 50735 | 51097 |
| YP_009151973.1 | NC_027378_p29 | hypothetical protein | phrog_26834 | unknown function | unknown function | -1 | 22375 | 22659 |
| YP_009152023.1 | NC_027378_p79 | hypothetical protein | phrog_5321 | unknown function | unknown function | 1 | 52818 | 53087 |
| YP_009151989.1 | NC_027378_p45 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 32193 | 32687 |
| YP_009151949.1 | NC_027378_p5 | capsid protein | phrog_247 | major head protein | head and packaging | 1 | 4877 | 5938 |
| YP_009151974.1 | NC_027378_p30 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 22724 | 24709 |
| YP_009151968.1 | NC_027378_p24 | hypothetical protein | phrog_15669 | unknown function | unknown function | -1 | 21134 | 21415 |
| YP_009152014.1 | NC_027378_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50094 | 50474 |
| YP_009151966.1 | NC_027378_p22 | hypothetical protein | phrog_7239 | unknown function | unknown function | 1 | 20605 | 20889 |
| YP_009152032.1 | NC_027378_p88 | hypothetical protein | phrog_5975 | unknown function | unknown function | 1 | 56300 | 56776 |
| YP_009151981.1 | NC_027378_p37 | hypothetical protein | phrog_23361 | unknown function | unknown function | -1 | 27979 | 28524 |
| YP_009151956.1 | NC_027378_p12 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 8902 | 9825 |
| YP_009151998.1 | NC_027378_p54 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 40059 | 40469 |
| YP_009151969.1 | NC_027378_p25 | hypothetical protein | phrog_23919 | unknown function | unknown function | -1 | 21412 | 21618 |
| YP_009151986.1 | NC_027378_p42 | hypothetical protein | phrog_1972 | unknown function | unknown function | -1 | 30230 | 30484 |
| YP_009151977.1 | NC_027378_p33 | hypothetical protein | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 25609 | 26529 |
| YP_009151947.1 | NC_027378_p3 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 2290 | 3786 |
| YP_009151959.1 | NC_027378_p15 | tape measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 10640 | 13756 |
| YP_009152013.1 | NC_027378_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49909 | 50094 |
| YP_009152008.1 | NC_027378_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47554 | 47730 |
| YP_009152007.1 | NC_027378_p63 | hypothetical protein | phrog_25978 | unknown function | unknown function | -1 | 47225 | 47551 |
| YP_009152024.1 | NC_027378_p80 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 53155 | 53547 |
| YP_009152020.1 | NC_027378_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51965 | 52051 |
| YP_009151978.1 | NC_027378_p34 | hypothetical protein | phrog_20065 | unknown function | unknown function | -1 | 26526 | 26732 |
| YP_009152015.1 | NC_027378_p71 | hypothetical protein | phrog_24875 | unknown function | unknown function | 1 | 50493 | 50750 |
| YP_009152003.1 | NC_027378_p59 | hypothetical protein | phrog_22269 | unknown function | unknown function | 1 | 42946 | 43170 |
| YP_009151990.1 | NC_027378_p46 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 32747 | 34723 |
| YP_009152027.1 | NC_027378_p83 | hypothetical protein | phrog_22841 | unknown function | unknown function | 1 | 54511 | 54696 |
| YP_009151996.1 | NC_027378_p52 | hypothetical protein | phrog_22347 | unknown function | unknown function | -1 | 38984 | 39214 |
| YP_009152005.1 | NC_027378_p61 | hypothetical protein | phrog_11967 | unknown function | unknown function | -1 | 45546 | 45749 |
| YP_009152002.1 | NC_027378_p58 | hypothetical protein | phrog_36709 | unknown function | unknown function | -1 | 42507 | 42704 |
| YP_009151970.1 | NC_027378_p26 | hypothetical protein | phrog_12090 | unknown function | unknown function | -1 | 21615 | 21800 |
| YP_009151993.1 | NC_027378_p49 | ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 36580 | 37308 |
| YP_009151991.1 | NC_027378_p47 | exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 34725 | 35633 |
| YP_009151999.1 | NC_027378_p55 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | -1 | 40711 | 41298 |
| YP_009151963.1 | NC_027378_p19 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 15337 | 18459 |
| YP_009151952.1 | NC_027378_p8 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 7141 | 7647 |
| YP_009152010.1 | NC_027378_p66 | hypothetical protein | phrog_11084 | unknown function | unknown function | -1 | 48605 | 49108 |
| YP_009151980.1 | NC_027378_p36 | queuosine biosynthesis protein QueD | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 27449 | 27982 |
| YP_009152029.1 | NC_027378_p85 | hypothetical protein | phrog_23528 | unknown function | unknown function | 1 | 55158 | 55418 |
| YP_009151957.1 | NC_027378_p13 | tape measure chaperone | phrog_569 | tail length tape measure protein | tail | 1 | 9835 | 10640 |
| YP_009152001.1 | NC_027378_p57 | hypothetical protein | phrog_25787 | unknown function | unknown function | -1 | 42193 | 42507 |
| YP_009152012.1 | NC_027378_p68 | hypothetical protein | phrog_37795 | unknown function | unknown function | 1 | 49708 | 49851 |
| YP_009152009.1 | NC_027378_p65 | hypothetical protein | phrog_22313 | unknown function | unknown function | -1 | 47904 | 48518 |
| YP_009152021.1 | NC_027378_p77 | hypothetical protein | phrog_8826 | unknown function | unknown function | 1 | 52055 | 52279 |
| YP_009151967.1 | NC_027378_p23 | hypothetical protein | phrog_25697 | unknown function | unknown function | 1 | 20901 | 21104 |
| YP_009152018.1 | NC_027378_p74 | hypothetical protein | phrog_27099 | unknown function | unknown function | 1 | 51340 | 51630 |
| YP_009151953.1 | NC_027378_p9 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 7651 | 8031 |
| YP_009152022.1 | NC_027378_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52282 | 52821 |
| YP_009151988.1 | NC_027378_p44 | hypothetical protein | phrog_11298 | unknown function | unknown function | -1 | 31261 | 32064 |
| YP_009151958.1 | NC_027378_p14 | tape measure chaperone | phrog_569 | tail length tape measure protein | tail | 1 | 9835 | 10242 |
| YP_009151964.1 | NC_027378_p20 | lipoprotein | phrog_12984 | lipoprotein | other | -1 | 18494 | 18727 |
| YP_009151984.1 | NC_027378_p40 | hypothetical protein | phrog_24420 | unknown function | unknown function | -1 | 29836 | 30024 |
| YP_009152030.1 | NC_027378_p86 | endolysin | phrog_873 | endolysin | head and packaging | 1 | 55501 | 55938 |
| YP_009151946.1 | NC_027378_p2 | TerL | phrog_2 | terminase large subunit | head and packaging | 1 | 719 | 2278 |
| YP_009151950.1 | NC_027378_p6 | hypothetical protein | phrog_27336 | unknown function | unknown function | 1 | 6009 | 6332 |
| YP_009151948.1 | NC_027378_p4 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 3882 | 4754 |
| YP_009152017.1 | NC_027378_p73 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 51099 | 51338 |