Genomic map of Escherichia phage YD-2008.s (NC_027383)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027383
Definition
Escherichia phage YD-2008.s, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus.
DB of origin
REFSEQ
Length
44613
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
54.61
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009152247.1 NC_027383_p6 DNA cytosine C5 methyltransferase phrog_757 DNA methyltransferase other 1 2710 3405
YP_009152261.1 NC_027383_p20 tail protein assembly I phrog_32 tail assembly protein tail -1 13840 14457
YP_009152245.1 NC_027383_p4 hypothetical protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 1035 1208
YP_009152289.1 NC_027383_p48 hypothetical protein phrog_2531 unknown function unknown function -1 33994 34281
YP_009152292.1 NC_027383_p51 hypothetical protein phrog_12533 unknown function unknown function -1 35166 35435
YP_009152242.1 NC_027383_p1 DNA polymerase A phrog_7766 DNA polymerase DNA, RNA and nucleotide metabolism 1 140 523
YP_009152254.1 NC_027383_p13 hypothetical protein phrog_9871 unknown function unknown function 1 5723 6277
YP_009152301.1 NC_027383_p60 hypothetical protein phrog_11211 unknown function unknown function 1 41518 41760
YP_009152256.1 NC_027383_p15 tail fiber protein phrog_1980 tail fiber protein tail -1 6922 9093
YP_009152285.1 NC_027383_p44 hypothetical protein phrog_11068 unknown function unknown function -1 32753 32914
YP_009152263.1 NC_027383_p22 minor tail protein L phrog_18 minor tail protein tail -1 15191 15979
YP_009152286.1 NC_027383_p45 lyzozyme phrog_7 endolysin lysis -1 32931 33422
YP_009152268.1 NC_027383_p27 major tail protein phrog_584 major tail protein tail -1 20383 21108
YP_009152248.1 NC_027383_p7 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 3402 3725
YP_009152258.1 NC_027383_p17 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover -1 9410 10081
YP_009152302.1 NC_027383_p61 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 41851 42633
YP_009152277.1 NC_027383_p36 hypothetical protein phrog_1965 unknown function unknown function 1 25615 26379
YP_009152269.1 NC_027383_p28 hypothetical protein phrog_179 tail terminator connector -1 21170 21592
YP_009152264.1 NC_027383_p23 minor tail protein phrog_9922 minor tail protein tail -1 15976 16575
YP_009152274.1 NC_027383_p33 major head/capsid protein phrog_247 major head protein head and packaging -1 23207 24307
YP_009152250.1 NC_027383_p9 hypothetical protein phrog_10530 DNA ligase DNA, RNA and nucleotide metabolism 1 4050 4514
YP_009152281.1 NC_027383_p40 minor tail protein phrog_145 portal protein head and packaging -1 27915 29435
YP_009152259.1 NC_027383_p18 hypothetical protein phrog_557 outer membrane protein other -1 10084 10386
YP_009152282.1 NC_027383_p41 terminase large subunit phrog_2 terminase large subunit head and packaging -1 29447 30832
YP_009152276.1 NC_027383_p35 hypothetical protein phrog_24635 unknown function unknown function 1 25246 25575
YP_009152284.1 NC_027383_p43 phosphoesterase phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 31514 32656
YP_009152290.1 NC_027383_p49 hypothetical protein phrog_13628 unknown function unknown function -1 34266 34406
YP_009152257.1 NC_027383_p16 superinfection exclusion protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 9174 9392
YP_009152291.1 NC_027383_p50 hypothetical protein phrog_10243 unknown function unknown function -1 34403 35020
YP_009152266.1 NC_027383_p25 hypothetical protein phrog_14875 unknown function unknown function -1 19637 19753
YP_009152251.1 NC_027383_p10 DNA-N-6 adenine methyltransferase phrog_111 DNA methyltransferase other 1 4501 4986
YP_009152267.1 NC_027383_p26 hypothetical protein phrog_569 tail length tape measure protein tail -1 19951 20313
YP_009152244.1 NC_027383_p3 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 716 994
YP_009152288.1 NC_027383_p47 holin-like class II protein phrog_2359 holin lysis -1 33651 33941
YP_009152260.1 NC_027383_p19 tail fiber protein phrog_31 central tail fiber J tail -1 10424 13843
YP_009152265.1 NC_027383_p24 tail length tape-measure protein 1 phrog_24 tail length tape measure protein tail -1 16610 19252
YP_009152255.1 NC_027383_p14 hypothetical protein phrog_10558 unknown function unknown function 1 6320 6895
YP_009152273.1 NC_027383_p32 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 22648 23148
YP_009152280.1 NC_027383_p39 head morphogenesis protein phrog_241 head morphogenesis head and packaging -1 26828 27907
YP_009152243.1 NC_027383_p2 hypothetical protein phrog_1222 unknown function unknown function 1 528 719
YP_009152270.1 NC_027383_p29 tail protein phrog_169 tail completion or Neck1 protein connector -1 21592 22185
YP_009152262.1 NC_027383_p21 minor tail protein phrog_30 minor tail protein tail -1 14448 15188
YP_009152246.1 NC_027383_p5 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 1289 2713
YP_009152297.1 NC_027383_p56 hypothetical protein phrog_3127 unknown function unknown function 1 39104 39616
YP_009152303.1 NC_027383_p62 DNA polymerase 1 singleton unknown function unknown function -1 42646 43647
YP_009152271.1 NC_027383_p30 structural protein phrog_161 head closure Hc1 connector -1 22187 22540
YP_009152279.1 NC_027383_p38 hypothetical protein phrog_2536 Rz-like spanin lysis -1 26506 26835
YP_009152253.1 NC_027383_p12 hypothetical protein phrog_415 polynucleotide kinase other 1 5188 5658
YP_009152249.1 NC_027383_p8 hypothetical protein phrog_18961 unknown function unknown function 1 3807 4049
YP_009152287.1 NC_027383_p46 holin-like class I protein phrog_2508 holin lysis -1 33409 33654
YP_009152300.1 NC_027383_p59 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 40095 41525
YP_009152294.1 NC_027383_p53 hypothetical protein phrog_23498 unknown function unknown function -1 35747 35881
YP_009152278.1 NC_027383_p37 hypothetical protein phrog_5672 Rz-like spanin lysis -1 26394 26552
YP_009152298.1 NC_027383_p57 hypothetical protein phrog_4965 unknown function unknown function 1 39665 39916
YP_009152296.1 NC_027383_p55 transposase phrog_9366 transposase integration and excision -1 38505 38834
YP_009152283.1 NC_027383_p42 terminase small subunit phrog_3064 terminase head and packaging -1 30832 31404
YP_009152252.1 NC_027383_p11 hypothetical protein phrog_10685 unknown function unknown function 1 4967 5191
YP_009152299.1 NC_027383_p58 hypothetical protein phrog_9934 unknown function unknown function 1 39916 40095
YP_009152272.1 NC_027383_p31 hypothetical protein phrog_11158 unknown function unknown function -1 22527 22646
YP_009152293.1 NC_027383_p52 hypothetical protein phrog_9839 unknown function unknown function -1 35445 35750
YP_009152295.1 NC_027383_p54 helicase-primase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism -1 36230 38494
YP_009152275.1 NC_027383_p34 hypothetical protein phrog_206 head scaffolding protein head and packaging -1 24405 25106