Genomic map of Escherichia phage CICC 80001 (NC_027387)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027387
Definition
Escherichia phage CICC 80001, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; Escherichia virus CICC80001.
DB of origin
REFSEQ
Length
38810
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
48.81
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009152461.1 NC_027387_p10 hypothetical protein phrog_6500 unknown function unknown function 1 6998 7198
YP_009152458.1 NC_027387_p7 hypothetical protein phrog_6254 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4424 4867
YP_009152492.1 NC_027387_p41 capsid and scaffold protein phrog_1052 head assembly head and packaging 1 25569 26492
YP_009152496.1 NC_027387_p45 tail tubular protein B phrog_457 tail protein tail 1 28457 30841
YP_009152467.1 NC_027387_p16 dGTP triphosphohydrolase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 11721 11972
YP_009152488.1 NC_027387_p37 hypothetical protein phrog_1391 unknown function unknown function 1 22874 23140
YP_009152456.1 NC_027387_p5 endopeptidase phrog_1327 Rz-like spanin lysis 1 2171 2614
YP_009152463.1 NC_027387_p12 hypothetical protein phrog_8393 unknown function unknown function 1 7436 7573
YP_009152499.1 NC_027387_p48 internal virion protein C phrog_1339 internal virion protein head and packaging 1 31939 34182
YP_009152491.1 NC_027387_p40 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 23859 25469
YP_009152471.1 NC_027387_p20 hypothetical protein phrog_2585 nucleotide kinase other 1 13521 13838
YP_009152464.1 NC_027387_p13 protein kinase phrog_2828 serine-threonine kinase other 1 7601 8680
YP_009152460.1 NC_027387_p9 hypothetical protein phrog_7202 unknown function unknown function 1 6776 6928
YP_009152455.1 NC_027387_p4 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 1807 2076
YP_009152495.1 NC_027387_p44 tail tubular protein A phrog_446 tail protein tail 1 27843 28433
YP_009152452.1 NC_027387_p1 tail fiber protein phrog_4242 tail fiber protein tail 1 58 1254
YP_009152484.1 NC_027387_p33 inihibitor of recBCD nuclease phrog_9014 Gp5.9-like inihibitor of recBCD nuclease moron, auxiliary metabolic gene and host takeover 1 21369 21527
YP_009152482.1 NC_027387_p31 HNS binding protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 20861 21160
YP_009152469.1 NC_027387_p18 DNA ligase phrog_30362 DNA ligase DNA, RNA and nucleotide metabolism 1 12716 13078
YP_009152477.1 NC_027387_p26 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 15897 17597
YP_009152497.1 NC_027387_p46 internal virion protein A phrog_308 internal virion protein head and packaging 1 30922 31338
YP_009152454.1 NC_027387_p3 holin phrog_920 holin lysis 1 1598 1801
YP_009152486.1 NC_027387_p35 hypothetical protein phrog_11345 unknown function unknown function 1 22404 22517
YP_009152489.1 NC_027387_p38 host range protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 23140 23541
YP_009152485.1 NC_027387_p34 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 21514 22416
YP_009152457.1 NC_027387_p6 DNA packaging protein phrog_38 terminase large subunit head and packaging 1 2614 4386
YP_009152500.1 NC_027387_p49 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 34209 38165
YP_009152498.1 NC_027387_p47 internal virion protein B phrog_805 internal virion protein head and packaging 1 31342 31932
YP_009152490.1 NC_027387_p39 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 23545 23844
YP_009152493.1 NC_027387_p42 capsid and scaffold protein phrog_267 major head protein head and packaging 1 26588 27619
YP_009152470.1 NC_027387_p19 hypothetical protein phrog_1777 unknown function unknown function 1 13261 13521
YP_009152459.1 NC_027387_p8 protein kinase phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 6426 6776
YP_009152462.1 NC_027387_p11 hypothetical protein phrog_16572 unknown function unknown function 1 7314 7442
YP_009152480.1 NC_027387_p29 hypothetical protein phrog_4023 unknown function unknown function 1 18259 18666
YP_009152481.1 NC_027387_p30 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 18685 20841
YP_009152483.1 NC_027387_p32 HNS binding protein phrog_1334 unknown function unknown function 1 21160 21369
YP_009152494.1 NC_027387_p43 capsid and scaffold protein phrog_12582 head protein head and packaging 1 27619 27777
YP_009152487.1 NC_027387_p36 hypothetical protein phrog_1447 unknown function unknown function 1 22615 22869
YP_009152478.1 NC_027387_p27 hypothetical protein phrog_1950 unknown function unknown function 1 17684 17896
YP_009152476.1 NC_027387_p25 lysin phrog_822 amidase lysis 1 15370 15825
YP_009152453.1 NC_027387_p2 hypothetical protein singleton unknown function unknown function 1 1268 1597
YP_009152468.1 NC_027387_p17 DNA ligase singleton unknown function unknown function 1 12057 12719
YP_009152472.1 NC_027387_p21 hypothetical protein phrog_1312 unknown function unknown function 1 13828 13950
YP_009152465.1 NC_027387_p14 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 8755 11406
YP_009152466.1 NC_027387_p15 hypothetical protein phrog_2490 unknown function unknown function 1 11591 11719
YP_009152475.1 NC_027387_p24 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 14915 15370
YP_009152473.1 NC_027387_p22 host RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 13952 14146
YP_009152479.1 NC_027387_p28 hypothetical protein phrog_2254 unknown function unknown function 1 17916 18185
YP_009152474.1 NC_027387_p23 ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 14216 14914