| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027387 |
Definition |
Escherichia phage CICC 80001, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; Escherichia virus CICC80001. |
DB of origin |
REFSEQ |
Length |
38810 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
48.81 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009152461.1 | NC_027387_p10 | hypothetical protein | phrog_6500 | unknown function | unknown function | 1 | 6998 | 7198 |
| YP_009152458.1 | NC_027387_p7 | hypothetical protein | phrog_6254 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4424 | 4867 |
| YP_009152492.1 | NC_027387_p41 | capsid and scaffold protein | phrog_1052 | head assembly | head and packaging | 1 | 25569 | 26492 |
| YP_009152496.1 | NC_027387_p45 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 28457 | 30841 |
| YP_009152467.1 | NC_027387_p16 | dGTP triphosphohydrolase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 11721 | 11972 |
| YP_009152488.1 | NC_027387_p37 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 22874 | 23140 |
| YP_009152456.1 | NC_027387_p5 | endopeptidase | phrog_1327 | Rz-like spanin | lysis | 1 | 2171 | 2614 |
| YP_009152463.1 | NC_027387_p12 | hypothetical protein | phrog_8393 | unknown function | unknown function | 1 | 7436 | 7573 |
| YP_009152499.1 | NC_027387_p48 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 31939 | 34182 |
| YP_009152491.1 | NC_027387_p40 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 23859 | 25469 |
| YP_009152471.1 | NC_027387_p20 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 13521 | 13838 |
| YP_009152464.1 | NC_027387_p13 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 7601 | 8680 |
| YP_009152460.1 | NC_027387_p9 | hypothetical protein | phrog_7202 | unknown function | unknown function | 1 | 6776 | 6928 |
| YP_009152455.1 | NC_027387_p4 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 1807 | 2076 |
| YP_009152495.1 | NC_027387_p44 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 27843 | 28433 |
| YP_009152452.1 | NC_027387_p1 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 58 | 1254 |
| YP_009152484.1 | NC_027387_p33 | inihibitor of recBCD nuclease | phrog_9014 | Gp5.9-like inihibitor of recBCD nuclease | moron, auxiliary metabolic gene and host takeover | 1 | 21369 | 21527 |
| YP_009152482.1 | NC_027387_p31 | HNS binding protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 20861 | 21160 |
| YP_009152469.1 | NC_027387_p18 | DNA ligase | phrog_30362 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 12716 | 13078 |
| YP_009152477.1 | NC_027387_p26 | primase/helicase protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 15897 | 17597 |
| YP_009152497.1 | NC_027387_p46 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 30922 | 31338 |
| YP_009152454.1 | NC_027387_p3 | holin | phrog_920 | holin | lysis | 1 | 1598 | 1801 |
| YP_009152486.1 | NC_027387_p35 | hypothetical protein | phrog_11345 | unknown function | unknown function | 1 | 22404 | 22517 |
| YP_009152489.1 | NC_027387_p38 | host range protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 23140 | 23541 |
| YP_009152485.1 | NC_027387_p34 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 21514 | 22416 |
| YP_009152457.1 | NC_027387_p6 | DNA packaging protein | phrog_38 | terminase large subunit | head and packaging | 1 | 2614 | 4386 |
| YP_009152500.1 | NC_027387_p49 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 34209 | 38165 |
| YP_009152498.1 | NC_027387_p47 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 31342 | 31932 |
| YP_009152490.1 | NC_027387_p39 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 23545 | 23844 |
| YP_009152493.1 | NC_027387_p42 | capsid and scaffold protein | phrog_267 | major head protein | head and packaging | 1 | 26588 | 27619 |
| YP_009152470.1 | NC_027387_p19 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 13261 | 13521 |
| YP_009152459.1 | NC_027387_p8 | protein kinase | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 6426 | 6776 |
| YP_009152462.1 | NC_027387_p11 | hypothetical protein | phrog_16572 | unknown function | unknown function | 1 | 7314 | 7442 |
| YP_009152480.1 | NC_027387_p29 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 18259 | 18666 |
| YP_009152481.1 | NC_027387_p30 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18685 | 20841 |
| YP_009152483.1 | NC_027387_p32 | HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 21160 | 21369 |
| YP_009152494.1 | NC_027387_p43 | capsid and scaffold protein | phrog_12582 | head protein | head and packaging | 1 | 27619 | 27777 |
| YP_009152487.1 | NC_027387_p36 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 22615 | 22869 |
| YP_009152478.1 | NC_027387_p27 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 17684 | 17896 |
| YP_009152476.1 | NC_027387_p25 | lysin | phrog_822 | amidase | lysis | 1 | 15370 | 15825 |
| YP_009152453.1 | NC_027387_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1268 | 1597 |
| YP_009152468.1 | NC_027387_p17 | DNA ligase | singleton | unknown function | unknown function | 1 | 12057 | 12719 |
| YP_009152472.1 | NC_027387_p21 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 13828 | 13950 |
| YP_009152465.1 | NC_027387_p14 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8755 | 11406 |
| YP_009152466.1 | NC_027387_p15 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 11591 | 11719 |
| YP_009152475.1 | NC_027387_p24 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14915 | 15370 |
| YP_009152473.1 | NC_027387_p22 | host RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 13952 | 14146 |
| YP_009152479.1 | NC_027387_p28 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 17916 | 18185 |
| YP_009152474.1 | NC_027387_p23 | ssDNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 14216 | 14914 |