| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027388 |
Definition |
Pseudomonas phage YH6, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Litunavirus; unclassified Litunavirus. |
DB of origin |
REFSEQ |
Length |
73050 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
54.88 |
Number of singletons |
5 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009152562.1 | NC_027388_p62 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38881 | 39891 |
| YP_009152566.1 | NC_027388_p66 | hypothetical protein | phrog_6026 | unknown function | unknown function | 1 | 43634 | 43999 |
| YP_009152540.1 | NC_027388_p40 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 19044 | 20210 |
| YP_009152535.1 | NC_027388_p35 | hypothetical protein | phrog_8112 | unknown function | unknown function | 1 | 14777 | 14962 |
| YP_009152544.1 | NC_027388_p44 | hypothetical protein | phrog_10189 | unknown function | unknown function | 1 | 24035 | 24175 |
| YP_009152581.1 | NC_027388_p81 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 64497 | 65687 |
| YP_009152550.1 | NC_027388_p50 | hypothetical protein | phrog_6854 | holin | lysis | 1 | 29430 | 29747 |
| YP_009152548.1 | NC_027388_p48 | rIIB-like protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 27296 | 29074 |
| YP_009152553.1 | NC_027388_p53 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | -1 | 30601 | 31113 |
| YP_009152506.1 | NC_027388_p6 | hypothetical protein | phrog_3968 | unknown function | unknown function | 1 | 2822 | 3052 |
| YP_009152557.1 | NC_027388_p57 | hypothetical protein | phrog_3370 | unknown function | unknown function | -1 | 35428 | 36099 |
| YP_009152501.1 | NC_027388_p1 | hypothetical protein | phrog_9146 | unknown function | unknown function | 1 | 81 | 383 |
| YP_009152546.1 | NC_027388_p46 | HNH endonuclease | phrog_10495 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24573 | 24764 |
| YP_009152527.1 | NC_027388_p27 | RNAP2 | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10487 | 11488 |
| YP_009152563.1 | NC_027388_p63 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 39906 | 42074 |
| YP_009152572.1 | NC_027388_p72 | hypothetical protein | phrog_7891 | unknown function | unknown function | 1 | 46537 | 46854 |
| YP_009152519.1 | NC_027388_p19 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 6573 | 7013 |
| YP_009152511.1 | NC_027388_p11 | hypothetical protein | phrog_8885 | unknown function | unknown function | 1 | 4123 | 4341 |
| YP_009152514.1 | NC_027388_p14 | hypothetical protein | phrog_8570 | unknown function | unknown function | 1 | 4861 | 5046 |
| YP_009152551.1 | NC_027388_p51 | hypothetical protein | phrog_8307 | unknown function | unknown function | 1 | 29797 | 29988 |
| YP_009152529.1 | NC_027388_p29 | hypothetical protein | phrog_6140 | unknown function | unknown function | 1 | 11811 | 12035 |
| YP_009152583.1 | NC_027388_p83 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 66095 | 68275 |
| YP_009152556.1 | NC_027388_p56 | hypothetical protein | phrog_7697 | tail fiber protein | tail | -1 | 32180 | 35389 |
| YP_009152574.1 | NC_027388_p74 | cell envelope integrity inner membrane protein | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 47083 | 57279 |
| YP_009152554.1 | NC_027388_p54 | hypothetical protein | phrog_3108 | unknown function | unknown function | -1 | 31110 | 31634 |
| YP_009152523.1 | NC_027388_p23 | hypothetical protein | phrog_14277 | unknown function | unknown function | 1 | 8652 | 8936 |
| YP_009152525.1 | NC_027388_p25 | RNAP2 | singleton | unknown function | unknown function | 1 | 9247 | 9489 |
| YP_009152510.1 | NC_027388_p10 | hypothetical protein | phrog_8477 | unknown function | unknown function | 1 | 3890 | 4093 |
| YP_009152577.1 | NC_027388_p77 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 59293 | 61515 |
| YP_009152509.1 | NC_027388_p9 | hypothetical protein | phrog_8449 | unknown function | unknown function | 1 | 3584 | 3886 |
| YP_009152512.1 | NC_027388_p12 | hypothetical protein | phrog_8334 | unknown function | unknown function | 1 | 4353 | 4571 |
| YP_009152565.1 | NC_027388_p65 | single-stranded DNA-binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42884 | 43630 |
| YP_009152508.1 | NC_027388_p8 | hypothetical protein | phrog_2614 | unknown function | unknown function | 1 | 3304 | 3600 |
| YP_009152579.1 | NC_027388_p79 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 62541 | 63206 |
| YP_009152534.1 | NC_027388_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14498 | 14533 |
| YP_009152538.1 | NC_027388_p38 | ATPase | phrog_1297 | ATPase | other | 1 | 16125 | 17195 |
| YP_009152517.1 | NC_027388_p17 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 5936 | 6322 |
| YP_009152575.1 | NC_027388_p75 | hypothetical protein | phrog_6467 | unknown function | unknown function | -1 | 57280 | 58845 |
| YP_009152561.1 | NC_027388_p61 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 38499 | 38879 |
| YP_009152576.1 | NC_027388_p76 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 58845 | 59312 |
| YP_009152530.1 | NC_027388_p30 | hypothetical protein | phrog_7111 | unknown function | unknown function | 1 | 12039 | 12665 |
| YP_009152549.1 | NC_027388_p49 | hypothetical protein | phrog_7722 | unknown function | unknown function | 1 | 29122 | 29346 |
| YP_009152507.1 | NC_027388_p7 | hypothetical protein | phrog_7875 | unknown function | unknown function | 1 | 3052 | 3300 |
| YP_009152505.1 | NC_027388_p5 | hypothetical protein | phrog_3968 | unknown function | unknown function | 1 | 2583 | 2825 |
| YP_009152536.1 | NC_027388_p36 | hypothetical protein | phrog_5534 | unknown function | unknown function | 1 | 15153 | 15854 |
| YP_009152588.1 | NC_027388_p88 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 71448 | 72173 |
| YP_009152558.1 | NC_027388_p58 | hypothetical protein | phrog_4047 | unknown function | unknown function | -1 | 36096 | 36395 |
| YP_009152542.1 | NC_027388_p42 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 20737 | 23352 |
| YP_009152573.1 | NC_027388_p73 | hypothetical protein | phrog_8152 | unknown function | unknown function | 1 | 46864 | 47067 |
| YP_009152580.1 | NC_027388_p80 | major coat protein | phrog_1357 | major head protein | head and packaging | -1 | 63263 | 64462 |
| YP_009152585.1 | NC_027388_p85 | hypothetical protein | phrog_8880 | unknown function | unknown function | 1 | 68733 | 69032 |
| YP_009152504.1 | NC_027388_p4 | hypothetical protein | phrog_7624 | unknown function | unknown function | 1 | 2373 | 2564 |
| YP_009152541.1 | NC_027388_p41 | hypothetical protein | phrog_7095 | unknown function | unknown function | 1 | 20210 | 20737 |
| YP_009152531.1 | NC_027388_p31 | hypothetical protein | phrog_8613 | unknown function | unknown function | 1 | 12662 | 13216 |
| YP_009152516.1 | NC_027388_p16 | hypothetical protein | phrog_8775 | unknown function | unknown function | 1 | 5628 | 5921 |
| YP_009152555.1 | NC_027388_p55 | hypothetical protein | phrog_2398 | unknown function | unknown function | -1 | 31728 | 32180 |
| YP_009152589.1 | NC_027388_p89 | hypothetical protein | phrog_9047 | unknown function | unknown function | 1 | 72240 | 72671 |
| YP_009152587.1 | NC_027388_p87 | terminase | phrog_38 | terminase large subunit | head and packaging | -1 | 69796 | 71448 |
| YP_009152560.1 | NC_027388_p60 | hypothetical protein | phrog_3360 | unknown function | unknown function | 1 | 38074 | 38502 |
| YP_009152521.1 | NC_027388_p21 | hypothetical protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7412 | 8344 |
| YP_009152545.1 | NC_027388_p45 | hypothetical protein | phrog_8620 | unknown function | unknown function | 1 | 24178 | 24576 |
| YP_009152513.1 | NC_027388_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4640 | 4789 |
| YP_009152537.1 | NC_027388_p37 | cell division protein | phrog_4781 | unknown function | unknown function | 1 | 15851 | 16093 |
| YP_009152564.1 | NC_027388_p64 | RecA-like NTPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 42123 | 42857 |
| YP_009152567.1 | NC_027388_p67 | hypothetical protein | phrog_3934 | unknown function | unknown function | 1 | 43996 | 44439 |
| YP_009152532.1 | NC_027388_p32 | hypothetical protein | phrog_8451 | unknown function | unknown function | 1 | 13216 | 13797 |
| YP_009152539.1 | NC_027388_p39 | metallopeptidase domain | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17725 | 18954 |
| YP_009152547.1 | NC_027388_p47 | rIIA-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 24768 | 27284 |
| YP_009152578.1 | NC_027388_p78 | structural protein | phrog_2050 | virion structural protein | head and packaging | -1 | 61572 | 62537 |
| YP_009152533.1 | NC_027388_p33 | hypothetical protein | phrog_8374 | unknown function | unknown function | 1 | 13797 | 14312 |
| YP_009152552.1 | NC_027388_p52 | hypothetical protein | phrog_8796 | unknown function | unknown function | 1 | 29981 | 30538 |
| YP_009152586.1 | NC_027388_p86 | structural protein | phrog_2125 | virion structural protein | head and packaging | -1 | 69065 | 69799 |
| YP_009152543.1 | NC_027388_p43 | hypothetical protein | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 23512 | 24003 |
| YP_009152568.1 | NC_027388_p68 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 44427 | 44987 |
| YP_009152559.1 | NC_027388_p59 | hypothetical protein | phrog_496 | tail fiber protein | tail | -1 | 36392 | 37681 |
| YP_009152569.1 | NC_027388_p69 | hypothetical protein | phrog_7564 | unknown function | unknown function | 1 | 44999 | 45436 |
| YP_009152518.1 | NC_027388_p18 | hypothetical protein | phrog_7756 | unknown function | unknown function | 1 | 6322 | 6573 |
| YP_009152502.1 | NC_027388_p2 | hypothetical protein | phrog_8657 | unknown function | unknown function | 1 | 607 | 1269 |
| YP_009152522.1 | NC_027388_p22 | hypothetical protein | phrog_8597 | unknown function | unknown function | 1 | 8444 | 8617 |
| YP_009152590.1 | NC_027388_p90 | hypothetical protein | phrog_8800 | unknown function | unknown function | 1 | 72671 | 72883 |
| YP_009152515.1 | NC_027388_p15 | toxin TX1 | phrog_6271 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 5138 | 5428 |
| YP_009152526.1 | NC_027388_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9982 | 10464 |
| YP_009152584.1 | NC_027388_p84 | hypothetical protein | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 68343 | 68729 |
| YP_009152571.1 | NC_027388_p71 | hypothetical protein | phrog_8394 | unknown function | unknown function | 1 | 46304 | 46540 |
| YP_009152570.1 | NC_027388_p70 | hypothetical protein | phrog_7212 | unknown function | unknown function | 1 | 45494 | 45898 |
| YP_009152582.1 | NC_027388_p82 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 65687 | 66025 |
| YP_009152528.1 | NC_027388_p28 | hypothetical protein | phrog_8738 | unknown function | unknown function | 1 | 11586 | 11738 |
| YP_009152503.1 | NC_027388_p3 | hypothetical protein | phrog_6483 | unknown function | unknown function | 1 | 1688 | 1942 |
| YP_009152524.1 | NC_027388_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9075 | 9212 |
| YP_009152520.1 | NC_027388_p20 | hypothetical protein | phrog_8585 | unknown function | unknown function | 1 | 7053 | 7400 |