Genomic map of Pseudomonas phage YH6 (NC_027388)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027388
Definition
Pseudomonas phage YH6, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Litunavirus; unclassified Litunavirus.
DB of origin
REFSEQ
Length
73050
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
90
%GC
54.88
Number of singletons
5
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009152562.1 NC_027388_p62 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 38881 39891
YP_009152566.1 NC_027388_p66 hypothetical protein phrog_6026 unknown function unknown function 1 43634 43999
YP_009152540.1 NC_027388_p40 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 19044 20210
YP_009152535.1 NC_027388_p35 hypothetical protein phrog_8112 unknown function unknown function 1 14777 14962
YP_009152544.1 NC_027388_p44 hypothetical protein phrog_10189 unknown function unknown function 1 24035 24175
YP_009152581.1 NC_027388_p81 hypothetical protein phrog_2120 tail length tape measure protein tail -1 64497 65687
YP_009152550.1 NC_027388_p50 hypothetical protein phrog_6854 holin lysis 1 29430 29747
YP_009152548.1 NC_027388_p48 rIIB-like protein phrog_2886 RIIB lysis inhibitor lysis 1 27296 29074
YP_009152553.1 NC_027388_p53 hypothetical protein phrog_312 Rz-like spanin lysis -1 30601 31113
YP_009152506.1 NC_027388_p6 hypothetical protein phrog_3968 unknown function unknown function 1 2822 3052
YP_009152557.1 NC_027388_p57 hypothetical protein phrog_3370 unknown function unknown function -1 35428 36099
YP_009152501.1 NC_027388_p1 hypothetical protein phrog_9146 unknown function unknown function 1 81 383
YP_009152546.1 NC_027388_p46 HNH endonuclease phrog_10495 HNH endonuclease DNA, RNA and nucleotide metabolism 1 24573 24764
YP_009152527.1 NC_027388_p27 RNAP2 phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 10487 11488
YP_009152563.1 NC_027388_p63 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 39906 42074
YP_009152572.1 NC_027388_p72 hypothetical protein phrog_7891 unknown function unknown function 1 46537 46854
YP_009152519.1 NC_027388_p19 hypothetical protein phrog_335 phosphatase other 1 6573 7013
YP_009152511.1 NC_027388_p11 hypothetical protein phrog_8885 unknown function unknown function 1 4123 4341
YP_009152514.1 NC_027388_p14 hypothetical protein phrog_8570 unknown function unknown function 1 4861 5046
YP_009152551.1 NC_027388_p51 hypothetical protein phrog_8307 unknown function unknown function 1 29797 29988
YP_009152529.1 NC_027388_p29 hypothetical protein phrog_6140 unknown function unknown function 1 11811 12035
YP_009152583.1 NC_027388_p83 portal protein phrog_1216 portal protein head and packaging -1 66095 68275
YP_009152556.1 NC_027388_p56 hypothetical protein phrog_7697 tail fiber protein tail -1 32180 35389
YP_009152574.1 NC_027388_p74 cell envelope integrity inner membrane protein phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 47083 57279
YP_009152554.1 NC_027388_p54 hypothetical protein phrog_3108 unknown function unknown function -1 31110 31634
YP_009152523.1 NC_027388_p23 hypothetical protein phrog_14277 unknown function unknown function 1 8652 8936
YP_009152525.1 NC_027388_p25 RNAP2 singleton unknown function unknown function 1 9247 9489
YP_009152510.1 NC_027388_p10 hypothetical protein phrog_8477 unknown function unknown function 1 3890 4093
YP_009152577.1 NC_027388_p77 hypothetical protein phrog_2220 unknown function unknown function -1 59293 61515
YP_009152509.1 NC_027388_p9 hypothetical protein phrog_8449 unknown function unknown function 1 3584 3886
YP_009152512.1 NC_027388_p12 hypothetical protein phrog_8334 unknown function unknown function 1 4353 4571
YP_009152565.1 NC_027388_p65 single-stranded DNA-binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 42884 43630
YP_009152508.1 NC_027388_p8 hypothetical protein phrog_2614 unknown function unknown function 1 3304 3600
YP_009152579.1 NC_027388_p79 hypothetical protein phrog_2130 unknown function unknown function -1 62541 63206
YP_009152534.1 NC_027388_p34 hypothetical protein singleton unknown function unknown function 1 14498 14533
YP_009152538.1 NC_027388_p38 ATPase phrog_1297 ATPase other 1 16125 17195
YP_009152517.1 NC_027388_p17 hypothetical protein phrog_2072 unknown function unknown function 1 5936 6322
YP_009152575.1 NC_027388_p75 hypothetical protein phrog_6467 unknown function unknown function -1 57280 58845
YP_009152561.1 NC_027388_p61 hypothetical protein phrog_2452 unknown function unknown function 1 38499 38879
YP_009152576.1 NC_027388_p76 hypothetical protein phrog_2646 unknown function unknown function -1 58845 59312
YP_009152530.1 NC_027388_p30 hypothetical protein phrog_7111 unknown function unknown function 1 12039 12665
YP_009152549.1 NC_027388_p49 hypothetical protein phrog_7722 unknown function unknown function 1 29122 29346
YP_009152507.1 NC_027388_p7 hypothetical protein phrog_7875 unknown function unknown function 1 3052 3300
YP_009152505.1 NC_027388_p5 hypothetical protein phrog_3968 unknown function unknown function 1 2583 2825
YP_009152536.1 NC_027388_p36 hypothetical protein phrog_5534 unknown function unknown function 1 15153 15854
YP_009152588.1 NC_027388_p88 hypothetical protein phrog_2109 unknown function unknown function -1 71448 72173
YP_009152558.1 NC_027388_p58 hypothetical protein phrog_4047 unknown function unknown function -1 36096 36395
YP_009152542.1 NC_027388_p42 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 20737 23352
YP_009152573.1 NC_027388_p73 hypothetical protein phrog_8152 unknown function unknown function 1 46864 47067
YP_009152580.1 NC_027388_p80 major coat protein phrog_1357 major head protein head and packaging -1 63263 64462
YP_009152585.1 NC_027388_p85 hypothetical protein phrog_8880 unknown function unknown function 1 68733 69032
YP_009152504.1 NC_027388_p4 hypothetical protein phrog_7624 unknown function unknown function 1 2373 2564
YP_009152541.1 NC_027388_p41 hypothetical protein phrog_7095 unknown function unknown function 1 20210 20737
YP_009152531.1 NC_027388_p31 hypothetical protein phrog_8613 unknown function unknown function 1 12662 13216
YP_009152516.1 NC_027388_p16 hypothetical protein phrog_8775 unknown function unknown function 1 5628 5921
YP_009152555.1 NC_027388_p55 hypothetical protein phrog_2398 unknown function unknown function -1 31728 32180
YP_009152589.1 NC_027388_p89 hypothetical protein phrog_9047 unknown function unknown function 1 72240 72671
YP_009152587.1 NC_027388_p87 terminase phrog_38 terminase large subunit head and packaging -1 69796 71448
YP_009152560.1 NC_027388_p60 hypothetical protein phrog_3360 unknown function unknown function 1 38074 38502
YP_009152521.1 NC_027388_p21 hypothetical protein phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 7412 8344
YP_009152545.1 NC_027388_p45 hypothetical protein phrog_8620 unknown function unknown function 1 24178 24576
YP_009152513.1 NC_027388_p13 hypothetical protein singleton unknown function unknown function 1 4640 4789
YP_009152537.1 NC_027388_p37 cell division protein phrog_4781 unknown function unknown function 1 15851 16093
YP_009152564.1 NC_027388_p64 RecA-like NTPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 42123 42857
YP_009152567.1 NC_027388_p67 hypothetical protein phrog_3934 unknown function unknown function 1 43996 44439
YP_009152532.1 NC_027388_p32 hypothetical protein phrog_8451 unknown function unknown function 1 13216 13797
YP_009152539.1 NC_027388_p39 metallopeptidase domain phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17725 18954
YP_009152547.1 NC_027388_p47 rIIA-like protein phrog_2979 RIIA lysis inhibitor lysis 1 24768 27284
YP_009152578.1 NC_027388_p78 structural protein phrog_2050 virion structural protein head and packaging -1 61572 62537
YP_009152533.1 NC_027388_p33 hypothetical protein phrog_8374 unknown function unknown function 1 13797 14312
YP_009152552.1 NC_027388_p52 hypothetical protein phrog_8796 unknown function unknown function 1 29981 30538
YP_009152586.1 NC_027388_p86 structural protein phrog_2125 virion structural protein head and packaging -1 69065 69799
YP_009152543.1 NC_027388_p43 hypothetical protein phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 23512 24003
YP_009152568.1 NC_027388_p68 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 44427 44987
YP_009152559.1 NC_027388_p59 hypothetical protein phrog_496 tail fiber protein tail -1 36392 37681
YP_009152569.1 NC_027388_p69 hypothetical protein phrog_7564 unknown function unknown function 1 44999 45436
YP_009152518.1 NC_027388_p18 hypothetical protein phrog_7756 unknown function unknown function 1 6322 6573
YP_009152502.1 NC_027388_p2 hypothetical protein phrog_8657 unknown function unknown function 1 607 1269
YP_009152522.1 NC_027388_p22 hypothetical protein phrog_8597 unknown function unknown function 1 8444 8617
YP_009152590.1 NC_027388_p90 hypothetical protein phrog_8800 unknown function unknown function 1 72671 72883
YP_009152515.1 NC_027388_p15 toxin TX1 phrog_6271 toxin moron, auxiliary metabolic gene and host takeover 1 5138 5428
YP_009152526.1 NC_027388_p26 hypothetical protein singleton unknown function unknown function 1 9982 10464
YP_009152584.1 NC_027388_p84 hypothetical protein phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 68343 68729
YP_009152571.1 NC_027388_p71 hypothetical protein phrog_8394 unknown function unknown function 1 46304 46540
YP_009152570.1 NC_027388_p70 hypothetical protein phrog_7212 unknown function unknown function 1 45494 45898
YP_009152582.1 NC_027388_p82 hypothetical protein phrog_2346 unknown function unknown function -1 65687 66025
YP_009152528.1 NC_027388_p28 hypothetical protein phrog_8738 unknown function unknown function 1 11586 11738
YP_009152503.1 NC_027388_p3 hypothetical protein phrog_6483 unknown function unknown function 1 1688 1942
YP_009152524.1 NC_027388_p24 hypothetical protein singleton unknown function unknown function 1 9075 9212
YP_009152520.1 NC_027388_p20 hypothetical protein phrog_8585 unknown function unknown function 1 7053 7400