| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027393 |
Definition |
Vibrio phage J2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus; unclassified Enhodamvirus. |
DB of origin |
REFSEQ |
Length |
39530 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
50.58 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009152793.1 | NC_027393_p42 | hypothetical protein | phrog_9495 | unknown function | unknown function | -1 | 36724 | 37095 |
| YP_009152760.1 | NC_027393_p9 | hypothetical protein | phrog_8977 | unknown function | unknown function | 1 | 7044 | 7313 |
| YP_009152785.1 | NC_027393_p34 | hypothetical protein | phrog_9940 | unknown function | unknown function | -1 | 32401 | 32754 |
| YP_009152795.1 | NC_027393_p44 | hypothetical protein | phrog_9197 | unknown function | unknown function | -1 | 37352 | 37576 |
| YP_009152778.1 | NC_027393_p27 | adenylosuccinate synthetase | phrog_1211 | 2-aminooxy adenylosuccinate synthetase | DNA, RNA and nucleotide metabolism | -1 | 23604 | 24635 |
| YP_009152768.1 | NC_027393_p17 | hypothetical protein | phrog_9153 | unknown function | unknown function | 1 | 13757 | 15841 |
| YP_009152766.1 | NC_027393_p15 | hypothetical protein | phrog_376 | tail protein | tail | 1 | 11566 | 13350 |
| YP_009152770.1 | NC_027393_p19 | hypothetical protein | phrog_684 | virion structural protein | head and packaging | 1 | 17015 | 19363 |
| YP_009152759.1 | NC_027393_p8 | hypothetical protein | phrog_3437 | major head protein | head and packaging | 1 | 6009 | 6977 |
| YP_009152799.1 | NC_027393_p48 | hypothetical protein | phrog_12668 | unknown function | unknown function | -1 | 39225 | 39494 |
| YP_009152761.1 | NC_027393_p10 | hypothetical protein | phrog_8869 | unknown function | unknown function | 1 | 7328 | 8176 |
| YP_009152763.1 | NC_027393_p12 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 8540 | 9013 |
| YP_009152776.1 | NC_027393_p25 | hypothetical protein | phrog_7076 | dATP triphosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 22828 | 23340 |
| YP_009152783.1 | NC_027393_p32 | hypothetical protein | phrog_2378 | unknown function | unknown function | -1 | 30337 | 30804 |
| YP_009152792.1 | NC_027393_p41 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | -1 | 36172 | 36621 |
| YP_009152755.1 | NC_027393_p4 | hypothetical protein | phrog_332 | head-tail adaptor | connector | 1 | 2854 | 4497 |
| YP_009152780.1 | NC_027393_p29 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26955 | 28856 |
| YP_009152796.1 | NC_027393_p45 | hypothetical protein | phrog_9131 | unknown function | unknown function | -1 | 37645 | 37935 |
| YP_009152777.1 | NC_027393_p26 | hypothetical protein | phrog_9860 | unknown function | unknown function | -1 | 23342 | 23602 |
| YP_009152769.1 | NC_027393_p18 | hypothetical protein | phrog_8824 | unknown function | unknown function | 1 | 15841 | 17013 |
| YP_009152784.1 | NC_027393_p33 | superfamily II DNA/RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 30867 | 32336 |
| YP_009152752.1 | NC_027393_p1 | hypothetical protein | phrog_9836 | unknown function | unknown function | 1 | 412 | 633 |
| YP_009152753.1 | NC_027393_p2 | hypothetical protein | phrog_8823 | terminase small subunit | head and packaging | 1 | 650 | 1150 |
| YP_009152762.1 | NC_027393_p11 | hypothetical protein | phrog_8135 | unknown function | unknown function | 1 | 8173 | 8538 |
| YP_009152758.1 | NC_027393_p7 | hypothetical protein | phrog_3742 | unknown function | unknown function | 1 | 4999 | 5841 |
| YP_009152773.1 | NC_027393_p22 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 21849 | 22166 |
| YP_009152764.1 | NC_027393_p13 | hypothetical protein | phrog_8910 | unknown function | unknown function | 1 | 9006 | 9308 |
| YP_009152789.1 | NC_027393_p38 | hypothetical protein | phrog_9382 | unknown function | unknown function | -1 | 34440 | 34760 |
| YP_009152765.1 | NC_027393_p14 | hypothetical protein | phrog_9239 | tail tubular protein | tail | 1 | 9332 | 11557 |
| YP_009152771.1 | NC_027393_p20 | hypothetical protein | phrog_4440 | tail fiber protein | tail | 1 | 19367 | 20440 |
| YP_009152788.1 | NC_027393_p37 | hypothetical protein | phrog_3392 | unknown function | unknown function | -1 | 34028 | 34438 |
| YP_009152794.1 | NC_027393_p43 | hypothetical protein | phrog_13675 | unknown function | unknown function | -1 | 37092 | 37352 |
| YP_009152798.1 | NC_027393_p47 | hypothetical protein | phrog_14193 | unknown function | unknown function | -1 | 38701 | 39192 |
| YP_009152797.1 | NC_027393_p46 | hypothetical protein | phrog_8878 | unknown function | unknown function | -1 | 38042 | 38632 |
| YP_009152775.1 | NC_027393_p24 | hypothetical protein | phrog_10658 | unknown function | unknown function | -1 | 22670 | 22831 |
| YP_009152772.1 | NC_027393_p21 | outer capsid protein | phrog_8700 | unknown function | unknown function | 1 | 20442 | 21824 |
| YP_009152774.1 | NC_027393_p23 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 22243 | 22680 |
| YP_009152757.1 | NC_027393_p6 | hypothetical protein | phrog_5977 | unknown function | unknown function | 1 | 4737 | 4994 |
| YP_009152781.1 | NC_027393_p30 | single stranded DNA-binding protein | phrog_7364 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28865 | 29341 |
| YP_009152790.1 | NC_027393_p39 | hypothetical protein | phrog_9688 | unknown function | unknown function | -1 | 34808 | 35578 |
| YP_009152779.1 | NC_027393_p28 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 24677 | 26965 |
| YP_009152754.1 | NC_027393_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1137 | 2843 |
| YP_009152787.1 | NC_027393_p36 | hypothetical protein | phrog_4049 | unknown function | unknown function | -1 | 33567 | 34031 |
| YP_009152756.1 | NC_027393_p5 | hypothetical protein | phrog_9429 | unknown function | unknown function | 1 | 4497 | 4724 |
| YP_009152782.1 | NC_027393_p31 | hypothetical protein | phrog_2402 | unknown function | unknown function | -1 | 29407 | 30216 |
| YP_009152767.1 | NC_027393_p16 | hypothetical protein | phrog_9290 | unknown function | unknown function | 1 | 13356 | 13760 |
| YP_009152786.1 | NC_027393_p35 | hypothetical protein | phrog_8941 | unknown function | unknown function | -1 | 32754 | 33434 |
| YP_009152791.1 | NC_027393_p40 | hypothetical protein | phrog_9060 | unknown function | unknown function | -1 | 35677 | 36162 |