| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027397 |
Definition |
Vibrio phage QH, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus; unclassified Enhodamvirus. |
DB of origin |
REFSEQ |
Length |
39725 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
50.5 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009153046.1 | NC_027397_p20 | tail fiber | phrog_4440 | tail fiber protein | tail | 1 | 19362 | 20435 |
| YP_009153061.1 | NC_027397_p35 | hypothetical protein | phrog_4049 | unknown function | unknown function | -1 | 33440 | 33904 |
| YP_009153057.1 | NC_027397_p31 | hypothetical protein | phrog_2378 | unknown function | unknown function | -1 | 30181 | 30648 |
| YP_009153056.1 | NC_027397_p30 | hypothetical protein | phrog_2402 | unknown function | unknown function | -1 | 29251 | 30060 |
| YP_009153050.1 | NC_027397_p24 | hypothetical protein | phrog_7076 | dATP triphosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 22672 | 23184 |
| YP_009153039.1 | NC_027397_p13 | hypothetical protein | phrog_8910 | unknown function | unknown function | 1 | 9004 | 9306 |
| YP_009153027.1 | NC_027397_p1 | hypothetical protein | phrog_9836 | unknown function | unknown function | 1 | 410 | 631 |
| YP_009153065.1 | NC_027397_p39 | hypothetical protein | phrog_9060 | unknown function | unknown function | -1 | 35556 | 36041 |
| YP_009153034.1 | NC_027397_p8 | hypothetical protein | phrog_3437 | major head protein | head and packaging | 1 | 6007 | 6975 |
| YP_009153036.1 | NC_027397_p10 | hypothetical protein | phrog_8869 | unknown function | unknown function | 1 | 7326 | 8174 |
| YP_009153054.1 | NC_027397_p28 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 26799 | 28700 |
| YP_009153058.1 | NC_027397_p32 | superfamily II DNA/RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 30711 | 32180 |
| YP_009153048.1 | NC_027397_p22 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 21844 | 22161 |
| YP_009153060.1 | NC_027397_p34 | hypothetical protein | phrog_8941 | unknown function | unknown function | -1 | 32598 | 33290 |
| YP_009153043.1 | NC_027397_p17 | hypothetical protein | phrog_9153 | unknown function | unknown function | 1 | 13752 | 15836 |
| YP_009153032.1 | NC_027397_p6 | hypothetical protein | phrog_5977 | unknown function | unknown function | 1 | 4735 | 4992 |
| YP_009153040.1 | NC_027397_p14 | major tail subunit | phrog_9239 | tail tubular protein | tail | 1 | 9330 | 11561 |
| YP_009153055.1 | NC_027397_p29 | single stranded DNA-binding protein | phrog_7364 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28709 | 29185 |
| YP_009153029.1 | NC_027397_p3 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1135 | 2841 |
| YP_009153028.1 | NC_027397_p2 | hypothetical protein | phrog_8823 | terminase small subunit | head and packaging | 1 | 648 | 1148 |
| YP_009153049.1 | NC_027397_p23 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 22238 | 22675 |
| YP_009153041.1 | NC_027397_p15 | hypothetical protein | phrog_376 | tail protein | tail | 1 | 11570 | 13354 |
| YP_009153047.1 | NC_027397_p21 | outer capsid protein | phrog_8700 | unknown function | unknown function | 1 | 20437 | 21819 |
| YP_009153069.1 | NC_027397_p43 | hypothetical protein | phrog_9197 | unknown function | unknown function | -1 | 37288 | 37512 |
| YP_009153059.1 | NC_027397_p33 | hypothetical protein | phrog_9940 | unknown function | unknown function | -1 | 32245 | 32598 |
| YP_009153070.1 | NC_027397_p44 | hypothetical protein | phrog_9131 | unknown function | unknown function | -1 | 37590 | 37880 |
| YP_009153071.1 | NC_027397_p45 | hypothetical protein | phrog_9346 | unknown function | unknown function | -1 | 37987 | 38226 |
| YP_009153038.1 | NC_027397_p12 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 8538 | 9011 |
| YP_009153053.1 | NC_027397_p27 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 24521 | 26809 |
| YP_009153044.1 | NC_027397_p18 | hypothetical protein | phrog_8824 | unknown function | unknown function | 1 | 15836 | 17008 |
| YP_009153072.1 | NC_027397_p46 | hypothetical protein | phrog_8878 | unknown function | unknown function | -1 | 38237 | 38827 |
| YP_009153037.1 | NC_027397_p11 | hypothetical protein | phrog_8135 | unknown function | unknown function | 1 | 8171 | 8536 |
| YP_009153074.1 | NC_027397_p48 | hypothetical protein | phrog_12668 | unknown function | unknown function | -1 | 39420 | 39689 |
| YP_009153042.1 | NC_027397_p16 | hypothetical protein | phrog_9290 | unknown function | unknown function | 1 | 13357 | 13755 |
| YP_009153031.1 | NC_027397_p5 | hypothetical protein | phrog_9429 | unknown function | unknown function | 1 | 4495 | 4722 |
| YP_009153035.1 | NC_027397_p9 | hypothetical protein | phrog_8977 | unknown function | unknown function | 1 | 7042 | 7311 |
| YP_009153045.1 | NC_027397_p19 | hypothetical protein | phrog_684 | virion structural protein | head and packaging | 1 | 17010 | 19358 |
| YP_009153068.1 | NC_027397_p42 | hypothetical protein | phrog_13675 | unknown function | unknown function | -1 | 37028 | 37291 |
| YP_009153062.1 | NC_027397_p36 | hypothetical protein | phrog_3392 | unknown function | unknown function | -1 | 33901 | 34311 |
| YP_009153073.1 | NC_027397_p47 | hypothetical protein | phrog_14193 | unknown function | unknown function | -1 | 38896 | 39387 |
| YP_009153066.1 | NC_027397_p40 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | -1 | 36051 | 36557 |
| YP_009153064.1 | NC_027397_p38 | hypothetical protein | phrog_9688 | unknown function | unknown function | -1 | 34687 | 35457 |
| YP_009153063.1 | NC_027397_p37 | hypothetical protein | phrog_9382 | unknown function | unknown function | -1 | 34313 | 34639 |
| YP_009153052.1 | NC_027397_p26 | adenylosuccinate synthetase | phrog_1211 | 2-aminooxy adenylosuccinate synthetase | DNA, RNA and nucleotide metabolism | -1 | 23448 | 24479 |
| YP_009153051.1 | NC_027397_p25 | hypothetical protein | phrog_9860 | unknown function | unknown function | -1 | 23186 | 23446 |
| YP_009153033.1 | NC_027397_p7 | hypothetical protein | phrog_3742 | unknown function | unknown function | 1 | 4997 | 5839 |
| YP_009153030.1 | NC_027397_p4 | hypothetical protein | phrog_332 | head-tail adaptor | connector | 1 | 2852 | 4495 |
| YP_009153067.1 | NC_027397_p41 | hypothetical protein | phrog_9495 | unknown function | unknown function | -1 | 36660 | 37031 |