| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027625 |
Definition |
Propionibacterium phage Kubed, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus. |
DB of origin |
REFSEQ |
Length |
29461 |
Host Name |
Propionibacterium acnes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
44 |
%GC |
54.52 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009160062.1 | NC_027625_p8 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 6096 | 6443 |
| YP_009160065.1 | NC_027625_p11 | major tail protein | phrog_117 | major tail protein | tail | 1 | 7161 | 7790 |
| YP_009160097.1 | NC_027625_p43 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26580 | 26888 |
| YP_009160091.1 | NC_027625_p37 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24662 | 25015 |
| YP_009160092.1 | NC_027625_p38 | hypothetical protein | phrog_4216 | unknown function | unknown function | -1 | 25041 | 25124 |
| YP_009160069.1 | NC_027625_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 11291 | 12232 |
| YP_009160068.1 | NC_027625_p14 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8509 | 11274 |
| YP_009160095.2 | NC_027625_p41 | hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25572 | 26111 |
| YP_009160055.2 | NC_027625_p1 | terminase small subunit | phrog_1897 | terminase small subunit | head and packaging | 1 | 65 | 373 |
| YP_009160093.1 | NC_027625_p39 | hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 25121 | 25324 |
| YP_009160087.1 | NC_027625_p33 | DNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 21886 | 22749 |
| YP_009160066.1 | NC_027625_p12 | tail assembly chaperone | phrog_4075 | tail assembly chaperone | tail | 1 | 7819 | 8501 |
| YP_009160094.1 | NC_027625_p40 | hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 25321 | 25548 |
| YP_009160056.1 | NC_027625_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 378 | 1889 |
| YP_009160063.1 | NC_027625_p9 | minor tail protein | phrog_387 | neck protein | connector | 1 | 6450 | 6740 |
| YP_009160074.1 | NC_027625_p20 | lysin | phrog_670 | endolysin | lysis | 1 | 15391 | 16251 |
| YP_009160080.1 | NC_027625_p26 | exonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18268 | 19311 |
| YP_009160076.1 | NC_027625_p22 | hypothetical protein | phrog_2092 | unknown function | unknown function | -1 | 16752 | 17240 |
| YP_009160096.1 | NC_027625_p42 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26232 | 26543 |
| YP_009160061.1 | NC_027625_p7 | head-to-tail connector protein | phrog_1290 | head-tail adaptor | connector | 1 | 5615 | 6094 |
| YP_009160058.1 | NC_027625_p4 | minor capsid protein | phrog_193 | head maturation protease | head and packaging | 1 | 3215 | 3970 |
| YP_009160064.1 | NC_027625_p10 | minor tail protein | phrog_1892 | minor tail protein | tail | 1 | 6737 | 7108 |
| YP_009160083.1 | NC_027625_p29 | hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 20046 | 20612 |
| YP_009160098.1 | NC_027625_p44 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29097 | 29399 |
| YP_009160084.1 | NC_027625_p30 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20657 | 21328 |
| YP_009160079.1 | NC_027625_p25 | helix-turn-helix DNA binding domain protein | phrog_1340 | unknown function | unknown function | -1 | 17938 | 18258 |
| YP_009160078.1 | NC_027625_p24 | hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17637 | 17921 |
| YP_009160075.1 | NC_027625_p21 | holin | phrog_443 | holin | lysis | 1 | 16264 | 16662 |
| YP_009160082.1 | NC_027625_p28 | hypothetical protein | phrog_2548 | unknown function | unknown function | -1 | 19483 | 20049 |
| YP_009160088.1 | NC_027625_p34 | hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22791 | 23258 |
| YP_009160081.1 | NC_027625_p27 | helix-turn-helix DNA binding domain protein | phrog_1923 | unknown function | unknown function | -1 | 19308 | 19499 |
| YP_009160057.1 | NC_027625_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1886 | 3211 |
| YP_009160067.1 | NC_027625_p13 | tail assembly chaperone | phrog_1927 | tail assembly chaperone | tail | 1 | 7819 | 8115 |
| YP_009160085.1 | NC_027625_p31 | DNA primase | phrog_2304 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 21165 | 21566 |
| YP_009160060.1 | NC_027625_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4642 | 5589 |
| YP_009160073.1 | NC_027625_p19 | minor tail protein | phrog_1806 | collagen like minor tail | tail | 1 | 14536 | 15333 |
| YP_009160059.1 | NC_027625_p5 | scaffolding protein | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4081 | 4635 |
| YP_009160070.1 | NC_027625_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 12239 | 13396 |
| YP_009160086.1 | NC_027625_p32 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21526 | 21882 |
| YP_009160090.1 | NC_027625_p36 | exonuclease | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23721 | 24662 |
| YP_009160072.1 | NC_027625_p18 | minor tail protein | phrog_1958 | minor tail protein | tail | 1 | 14278 | 14535 |
| YP_009160077.1 | NC_027625_p23 | helix-turn-helix DNA binding domain protein | phrog_1729 | unknown function | unknown function | -1 | 17246 | 17632 |
| YP_009160089.1 | NC_027625_p35 | hypothetical protein | phrog_1890 | unknown function | unknown function | -1 | 23314 | 23724 |
| YP_009160071.1 | NC_027625_p17 | minor tail protein | phrog_1910 | lectin | other | 1 | 13415 | 14233 |