| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027629 |
Definition |
Propionibacterium phage Attacne, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus. |
DB of origin |
REFSEQ |
Length |
28876 |
Host Name |
Propionibacterium acnes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
54.7 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009160236.1 | NC_027629_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1881 | 3206 |
| YP_009160249.1 | NC_027629_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 12235 | 13392 |
| YP_009160266.1 | NC_027629_p33 | DNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 21276 | 22229 |
| YP_009160247.1 | NC_027629_p14 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8505 | 11270 |
| YP_009160276.1 | NC_027629_p43 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26038 | 26346 |
| YP_009160239.1 | NC_027629_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4645 | 5592 |
| YP_009160246.1 | NC_027629_p13 | tail assembly chaperone | phrog_1927 | tail assembly chaperone | tail | 1 | 7815 | 8111 |
| YP_009160241.1 | NC_027629_p8 | head-to-tail connector protein | phrog_501 | head closure Hc1 | connector | 1 | 6099 | 6446 |
| YP_009160240.1 | NC_027629_p7 | head-to-tail connector protein | phrog_1290 | head-tail adaptor | connector | 1 | 5618 | 6097 |
| YP_009160258.1 | NC_027629_p25 | helix-turn-helix DNA binding domain protein | phrog_1340 | unknown function | unknown function | -1 | 17715 | 18035 |
| YP_009160263.1 | NC_027629_p30 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20141 | 20812 |
| YP_009160278.1 | NC_027629_p45 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28511 | 28813 |
| YP_009160242.1 | NC_027629_p9 | minor tail protein | phrog_387 | neck protein | connector | 1 | 6453 | 6743 |
| YP_009160256.1 | NC_027629_p23 | helix-turn-helix DNA binding domain protein | phrog_1729 | unknown function | unknown function | -1 | 17017 | 17409 |
| YP_009160253.2 | NC_027629_p20 | lysin | phrog_670 | endolysin | lysis | 1 | 15389 | 16243 |
| YP_009160235.1 | NC_027629_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 373 | 1884 |
| YP_009160260.1 | NC_027629_p27 | helix-turn-helix DNA binding domain protein | phrog_1923 | unknown function | unknown function | -1 | 19088 | 19288 |
| YP_009160262.1 | NC_027629_p29 | hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 19536 | 20093 |
| YP_009160273.1 | NC_027629_p40 | hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 24792 | 25022 |
| YP_009160254.1 | NC_027629_p21 | holin | phrog_443 | holin | lysis | 1 | 16250 | 16654 |
| YP_009160245.1 | NC_027629_p12 | tail assembly chaperone | phrog_4075 | tail assembly chaperone | tail | 1 | 7815 | 8497 |
| YP_009160251.1 | NC_027629_p18 | minor tail protein | phrog_1958 | minor tail protein | tail | 1 | 14275 | 14538 |
| YP_009160234.2 | NC_027629_p1 | terminase small subunit | phrog_1897 | terminase small subunit | head and packaging | 1 | 65 | 373 |
| YP_009160261.1 | NC_027629_p28 | hypothetical protein | phrog_5969 | unknown function | unknown function | -1 | 19272 | 19481 |
| YP_009160277.2 | NC_027629_p44 | hypothetical protein | phrog_7333 | unknown function | unknown function | 1 | 28341 | 28463 |
| YP_009160264.1 | NC_027629_p31 | DNA primase | phrog_2304 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20649 | 21050 |
| YP_009160250.2 | NC_027629_p17 | minor tail protein | phrog_1910 | lectin | other | 1 | 13412 | 14230 |
| YP_009160255.2 | NC_027629_p22 | hypothetical protein | phrog_21407 | unknown function | unknown function | -1 | 16740 | 17012 |
| YP_009160257.1 | NC_027629_p24 | hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17413 | 17697 |
| YP_009160238.1 | NC_027629_p5 | scaffolding protein | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4078 | 4638 |
| YP_009160268.1 | NC_027629_p35 | hypothetical protein | phrog_1890 | unknown function | unknown function | -1 | 22780 | 23190 |
| YP_009160259.1 | NC_027629_p26 | exonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18045 | 19091 |
| YP_009160244.1 | NC_027629_p11 | major tail protein | phrog_117 | major tail protein | tail | 1 | 7163 | 7786 |
| YP_009160265.1 | NC_027629_p32 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21010 | 21366 |
| YP_009160252.1 | NC_027629_p19 | minor tail protein | phrog_1806 | collagen like minor tail | tail | 1 | 14541 | 15347 |
| YP_009160269.1 | NC_027629_p36 | exonuclease | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23187 | 24128 |
| YP_009160275.1 | NC_027629_p42 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 25698 | 26006 |
| YP_009160271.1 | NC_027629_p38 | hypothetical protein | phrog_4216 | unknown function | unknown function | -1 | 24513 | 24596 |
| YP_009160248.1 | NC_027629_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 11286 | 12227 |
| YP_009160270.1 | NC_027629_p37 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24128 | 24487 |
| YP_009160272.1 | NC_027629_p39 | hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 24593 | 24799 |
| YP_009160267.1 | NC_027629_p34 | hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22278 | 22739 |
| YP_009160274.1 | NC_027629_p41 | hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25045 | 25578 |
| YP_009160237.1 | NC_027629_p4 | minor capsid protein | phrog_193 | head maturation protease | head and packaging | 1 | 3213 | 3968 |
| YP_009160243.1 | NC_027629_p10 | minor tail protein | phrog_1892 | minor tail protein | tail | 1 | 6740 | 7111 |