| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027981 |
Definition |
Vibrio phage VP58.5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Vhmlvirus. |
DB of origin |
REFSEQ |
Length |
42612 |
Host Name |
Vibrio parahaemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
50.87 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009167764.1 | NC_027981_p57 | protein of an unannotated phage | phrog_1544 | unknown function | unknown function | 1 | 41734 | 42276 |
| YP_009167746.1 | NC_027981_p39 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 27070 | 27309 |
| YP_009167761.1 | NC_027981_p54 | protein of an unannotated phage | phrog_6952 | DNA methyltransferase | other | 1 | 40161 | 40811 |
| YP_009167733.1 | NC_027981_p26 | protein of an unannotated phage | phrog_76 | tail protein | tail | 1 | 20420 | 20941 |
| YP_009167722.1 | NC_027981_p15 | protein of an unannotated phage | phrog_48 | tail protein | tail | 1 | 10388 | 11131 |
| YP_009167750.1 | NC_027981_p43 | protein of an unannotated phage | phrog_4 | transcriptional repressor | transcription regulation | -1 | 33985 | 34662 |
| YP_009167719.1 | NC_027981_p12 | protein of an unannotated phage | phrog_5576 | unknown function | unknown function | 1 | 8915 | 9112 |
| YP_009167742.1 | NC_027981_p35 | protein of an unannotated phage | phrog_22479 | unknown function | unknown function | -1 | 25409 | 25663 |
| YP_009167731.1 | NC_027981_p24 | protein of an unannotated phage | phrog_103 | tail protein | tail | 1 | 16852 | 17226 |
| YP_009167718.1 | NC_027981_p11 | protein of an unannotated phage | phrog_11 | baseplate spike | tail | 1 | 8221 | 8913 |
| YP_009167741.1 | NC_027981_p34 | protein of an unannotated phage | phrog_23105 | unknown function | unknown function | -1 | 25176 | 25454 |
| YP_009167739.1 | NC_027981_p32 | protein of an unannotated phage | phrog_32786 | unknown function | unknown function | -1 | 23983 | 24207 |
| YP_009167738.1 | NC_027981_p31 | protein of an unannotated phage | phrog_10957 | unknown function | unknown function | -1 | 23683 | 23979 |
| YP_009167720.1 | NC_027981_p13 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 8994 | 9458 |
| YP_009167757.1 | NC_027981_p50 | protein of an unannotated phage | phrog_26726 | unknown function | unknown function | 1 | 38385 | 38975 |
| YP_009167712.1 | NC_027981_p5 | protein of an unannotated phage | phrog_53 | head maturation protease | head and packaging | 1 | 4186 | 5457 |
| YP_009167751.1 | NC_027981_p44 | protein of an unannotated phage | phrog_4834 | CII-like transcriptional activator | transcription regulation | 1 | 34684 | 35385 |
| YP_009167723.1 | NC_027981_p16 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 10424 | 10681 |
| YP_009167725.1 | NC_027981_p18 | protein of an unannotated phage | phrog_2889 | unknown function | unknown function | 1 | 11671 | 12903 |
| YP_009167762.1 | NC_027981_p55 | protein of an unannotated phage | phrog_7885 | unknown function | unknown function | 1 | 40895 | 41164 |
| YP_009167756.1 | NC_027981_p49 | protein of an unannotated phage | phrog_6795 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 37966 | 38385 |
| YP_009167745.1 | NC_027981_p38 | protein of an unannotated phage | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 26366 | 27007 |
| YP_009167747.1 | NC_027981_p40 | protein of an unannotated phage | phrog_5272 | unknown function | unknown function | 1 | 27688 | 29355 |
| YP_009167728.1 | NC_027981_p21 | protein of an unannotated phage | phrog_5714 | unknown function | unknown function | 1 | 14518 | 14862 |
| YP_009167737.1 | NC_027981_p30 | protein of an unannotated phage | phrog_27479 | unknown function | unknown function | -1 | 22928 | 23137 |
| YP_009167763.1 | NC_027981_p56 | protein of an unannotated phage | phrog_315 | endolysin | lysis | 1 | 41161 | 41718 |
| YP_009167753.1 | NC_027981_p46 | protein of an unannotated phage | phrog_37560 | unknown function | unknown function | 1 | 35912 | 36382 |
| YP_009167765.1 | NC_027981_p58 | protein of an unannotated phage | phrog_9123 | unknown function | unknown function | 1 | 42291 | 42584 |
| YP_009167752.1 | NC_027981_p45 | protein of an unannotated phage | phrog_54 | DksA-like zinc-finger protein | other | 1 | 35538 | 35804 |
| YP_009167724.1 | NC_027981_p17 | protein of an unannotated phage | phrog_3737 | tail fiber protein | tail | 1 | 11131 | 11667 |
| YP_009167736.1 | NC_027981_p29 | protein of an unannotated phage | phrog_28655 | unknown function | unknown function | 1 | 22224 | 22901 |
| YP_009167748.1 | NC_027981_p41 | protein of an unannotated phage | phrog_8 | transcriptional regulator | transcription regulation | 1 | 29950 | 30309 |
| YP_009167730.1 | NC_027981_p23 | protein of an unannotated phage | phrog_55 | head closure | connector | 1 | 16120 | 16620 |
| YP_009167754.1 | NC_027981_p47 | protein of an unannotated phage | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 36416 | 37345 |
| YP_009167714.1 | NC_027981_p7 | protein of an unannotated phage | phrog_29 | major head protein | head and packaging | 1 | 5855 | 6877 |
| YP_009167743.1 | NC_027981_p36 | protein of an unannotated phage | phrog_18491 | unknown function | unknown function | -1 | 25638 | 25871 |
| YP_009167717.1 | NC_027981_p10 | protein of an unannotated phage | phrog_1072 | unknown function | unknown function | 1 | 7785 | 8333 |
| YP_009167749.1 | NC_027981_p42 | protein of an unannotated phage | phrog_4913 | replication | DNA, RNA and nucleotide metabolism | -1 | 30316 | 33669 |
| YP_009167726.1 | NC_027981_p19 | protein of an unannotated phage | phrog_3206 | Avd protein of DGR | DNA, RNA and nucleotide metabolism | 1 | 13000 | 13320 |
| YP_009167708.1 | NC_027981_p1 | protein of an unannotated phage | phrog_57 | terminase small subunit | head and packaging | 1 | 74 | 655 |
| YP_009167755.1 | NC_027981_p48 | protein of an unannotated phage | phrog_3373 | unknown function | unknown function | 1 | 37400 | 37969 |
| YP_009167734.1 | NC_027981_p27 | protein of an unannotated phage | phrog_46 | baseplate hub | tail | 1 | 20931 | 21137 |
| YP_009167709.1 | NC_027981_p2 | protein of an unannotated phage | phrog_15 | terminase large subunit | head and packaging | 1 | 561 | 2444 |
| YP_009167715.1 | NC_027981_p8 | protein of an unannotated phage | phrog_22723 | unknown function | unknown function | 1 | 6888 | 7253 |
| YP_009167758.1 | NC_027981_p51 | protein of an unannotated phage | phrog_24854 | unknown function | unknown function | 1 | 38981 | 39142 |
| YP_009167721.1 | NC_027981_p14 | protein of an unannotated phage | phrog_6 | baseplate wedge subunit | tail | 1 | 9460 | 10395 |
| YP_009167716.1 | NC_027981_p9 | protein of an unannotated phage | phrog_27 | tail completion or Neck1 protein | connector | 1 | 7255 | 7788 |
| YP_009167759.1 | NC_027981_p52 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 39115 | 39333 |
| YP_009167729.1 | NC_027981_p22 | protein of an unannotated phage | phrog_23 | tail sheath | tail | 1 | 14913 | 16118 |
| YP_009167740.1 | NC_027981_p33 | protein of an unannotated phage | singleton | unknown function | unknown function | -1 | 24217 | 25179 |
| YP_009167713.1 | NC_027981_p6 | protein of an unannotated phage | phrog_49 | head decoration | head and packaging | 1 | 5477 | 5791 |
| YP_009167735.1 | NC_027981_p28 | protein of an unannotated phage | phrog_52 | tail protein | tail | 1 | 21141 | 22106 |
| YP_009167727.1 | NC_027981_p20 | protein of an unannotated phage | phrog_1423 | Reverse transcriptase | DNA, RNA and nucleotide metabolism | 1 | 13317 | 14594 |
| YP_009167710.1 | NC_027981_p3 | protein of an unannotated phage | phrog_75 | head-tail adaptor Ad1 | connector | 1 | 2437 | 2700 |
| YP_009167744.1 | NC_027981_p37 | protein of an unannotated phage | phrog_15913 | unknown function | unknown function | -1 | 26119 | 26394 |
| YP_009167711.1 | NC_027981_p4 | protein of an unannotated phage | phrog_21 | portal protein | head and packaging | 1 | 2700 | 4193 |
| YP_009167760.1 | NC_027981_p53 | protein of an unannotated phage | phrog_6025 | DNA methyltransferase | other | 1 | 39749 | 40240 |
| YP_009167732.1 | NC_027981_p25 | protein of an unannotated phage | phrog_28 | tail length tape measure protein | tail | 1 | 17398 | 20463 |