| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027982 |
Definition |
Lactobacillus phage phiPYB5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
32847 |
Host Name |
Lactobacillus fermentum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
45.46 |
Number of singletons |
10 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009167801.1 | NC_027982_p36 | phage antirepressor | phrog_1726 | anti-repressor | transcription regulation | 1 | 26620 | 27372 |
| YP_009167803.1 | NC_027982_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28279 | 28479 |
| YP_009167767.1 | NC_027982_p2 | hypothetical protein | phrog_29012 | unknown function | unknown function | 1 | 1710 | 1868 |
| YP_009167779.1 | NC_027982_p14 | hypothetical protein phig1ep23 | phrog_33 | distal tail protein Dit | tail | 1 | 11131 | 11946 |
| YP_009167800.1 | NC_027982_p35 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 26392 | 26586 |
| YP_009167810.1 | NC_027982_p45 | methyl-accepting chemotaxis sensory transducer | singleton | unknown function | unknown function | 1 | 32002 | 32406 |
| YP_009167796.1 | NC_027982_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24702 | 24884 |
| YP_009167778.1 | NC_027982_p13 | tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 8231 | 11131 |
| YP_009167789.1 | NC_027982_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19872 | 20195 |
| YP_009167798.1 | NC_027982_p33 | hypothetical protein | phrog_13670 | unknown function | unknown function | -1 | 25580 | 25855 |
| YP_009167792.1 | NC_027982_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22087 | 22515 |
| YP_009167794.1 | NC_027982_p29 | hypothetical protein | phrog_37096 | unknown function | unknown function | 1 | 22762 | 23073 |
| YP_009167797.1 | NC_027982_p32 | hypothetical protein | phrog_24502 | zinc-finger domain protein | other | -1 | 24977 | 25531 |
| YP_009167811.1 | NC_027982_p46 | hypothetical protein | phrog_30237 | unknown function | unknown function | 1 | 32406 | 32516 |
| YP_009167804.1 | NC_027982_p39 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 28482 | 29045 |
| YP_009167808.1 | NC_027982_p43 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31039 | 31842 |
| YP_009167780.1 | NC_027982_p15 | hypothetical protein | phrog_326 | tail protein with endopeptidase domain | other | 1 | 11959 | 13548 |
| YP_009167777.1 | NC_027982_p12 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 7746 | 8231 |
| YP_009167787.1 | NC_027982_p22 | hypothetical protein | phrog_16410 | unknown function | unknown function | 1 | 18677 | 19096 |
| YP_009167781.1 | NC_027982_p16 | dextranase 1 | phrog_291 | endolysin | lysis | 1 | 13545 | 15338 |
| YP_009167770.1 | NC_027982_p5 | phage capsid protein | phrog_10 | major head protein | head and packaging | 1 | 3731 | 4852 |
| YP_009167775.1 | NC_027982_p10 | phi13 family phage major tail protein | singleton | unknown function | unknown function | 1 | 6425 | 6805 |
| YP_009167768.1 | NC_027982_p3 | bacteriophage portal protein | phrog_12 | portal protein | head and packaging | 1 | 1877 | 3142 |
| YP_009167802.1 | NC_027982_p37 | hypothetical protein | phrog_585 | unknown function | unknown function | -1 | 27529 | 27942 |
| YP_009167807.1 | NC_027982_p42 | phage replication protein | phrog_428 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 30302 | 31027 |
| YP_009167774.1 | NC_027982_p9 | head-tail joining protein | phrog_78 | tail terminator | connector | 1 | 6006 | 6419 |
| YP_009167788.1 | NC_027982_p23 | side tail fiber protein | singleton | unknown function | unknown function | 1 | 19106 | 19849 |
| YP_009167771.1 | NC_027982_p6 | uncharacterized phage protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5000 | 5308 |
| YP_009167776.1 | NC_027982_p11 | phage transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 6856 | 7209 |
| YP_009167793.1 | NC_027982_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22554 | 22775 |
| YP_009167772.1 | NC_027982_p7 | hypothetical protein | phrog_25 | head closure Hc1 | connector | 1 | 5310 | 5642 |
| YP_009167786.1 | NC_027982_p21 | hypothetical protein | phrog_1009 | unknown function | unknown function | 1 | 18342 | 18680 |
| YP_009167784.1 | NC_027982_p19 | penicillin-binding protein 2 | singleton | unknown function | unknown function | 1 | 16976 | 17203 |
| YP_009167791.1 | NC_027982_p26 | lysin | phrog_291 | endolysin | lysis | 1 | 20675 | 21931 |
| YP_009167766.1 | NC_027982_p1 | bacteriophage terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 3 | 1697 |
| YP_009167783.1 | NC_027982_p18 | GDSL family lipase | phrog_17955 | esterase/lipase | other | 1 | 16140 | 16946 |
| YP_009167785.1 | NC_027982_p20 | hypothetical protein | phrog_6183 | minor tail protein | tail | 1 | 17187 | 18341 |
| YP_009167799.1 | NC_027982_p34 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 25888 | 26232 |
| YP_009167790.1 | NC_027982_p25 | holin | phrog_2609 | holin | lysis | 1 | 20208 | 20672 |
| YP_009167795.1 | NC_027982_p30 | integrase | phrog_95 | integrase | integration and excision | -1 | 23307 | 24659 |
| YP_009167773.1 | NC_027982_p8 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5626 | 6009 |
| YP_009167805.1 | NC_027982_p40 | phage nucleotide-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 29045 | 29707 |
| YP_009167769.1 | NC_027982_p4 | phage head maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3207 | 3713 |
| YP_009167809.1 | NC_027982_p44 | hypothetical protein | phrog_31679 | unknown function | unknown function | 1 | 31844 | 32002 |
| YP_009167806.1 | NC_027982_p41 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29710 | 30288 |
| YP_009167782.1 | NC_027982_p17 | cycloisomaltooligosaccharide glucanotransferase | singleton | unknown function | unknown function | 1 | 15304 | 16119 |