Genomic map of Lactobacillus phage phiPYB5 (NC_027982)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027982
Definition
Lactobacillus phage phiPYB5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
32847
Host Name
Lactobacillus fermentum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
46
%GC
45.46
Number of singletons
10
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009167801.1 NC_027982_p36 phage antirepressor phrog_1726 anti-repressor transcription regulation 1 26620 27372
YP_009167803.1 NC_027982_p38 hypothetical protein singleton unknown function unknown function 1 28279 28479
YP_009167767.1 NC_027982_p2 hypothetical protein phrog_29012 unknown function unknown function 1 1710 1868
YP_009167779.1 NC_027982_p14 hypothetical protein phig1ep23 phrog_33 distal tail protein Dit tail 1 11131 11946
YP_009167800.1 NC_027982_p35 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 26392 26586
YP_009167810.1 NC_027982_p45 methyl-accepting chemotaxis sensory transducer singleton unknown function unknown function 1 32002 32406
YP_009167796.1 NC_027982_p31 hypothetical protein singleton unknown function unknown function 1 24702 24884
YP_009167778.1 NC_027982_p13 tape measure protein phrog_167 tail length tape measure protein tail 1 8231 11131
YP_009167789.1 NC_027982_p24 hypothetical protein singleton unknown function unknown function 1 19872 20195
YP_009167798.1 NC_027982_p33 hypothetical protein phrog_13670 unknown function unknown function -1 25580 25855
YP_009167792.1 NC_027982_p27 hypothetical protein singleton unknown function unknown function 1 22087 22515
YP_009167794.1 NC_027982_p29 hypothetical protein phrog_37096 unknown function unknown function 1 22762 23073
YP_009167797.1 NC_027982_p32 hypothetical protein phrog_24502 zinc-finger domain protein other -1 24977 25531
YP_009167811.1 NC_027982_p46 hypothetical protein phrog_30237 unknown function unknown function 1 32406 32516
YP_009167804.1 NC_027982_p39 hypothetical protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 28482 29045
YP_009167808.1 NC_027982_p43 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 31039 31842
YP_009167780.1 NC_027982_p15 hypothetical protein phrog_326 tail protein with endopeptidase domain other 1 11959 13548
YP_009167777.1 NC_027982_p12 terminase small subunit phrog_51 terminase small subunit head and packaging 1 7746 8231
YP_009167787.1 NC_027982_p22 hypothetical protein phrog_16410 unknown function unknown function 1 18677 19096
YP_009167781.1 NC_027982_p16 dextranase 1 phrog_291 endolysin lysis 1 13545 15338
YP_009167770.1 NC_027982_p5 phage capsid protein phrog_10 major head protein head and packaging 1 3731 4852
YP_009167775.1 NC_027982_p10 phi13 family phage major tail protein singleton unknown function unknown function 1 6425 6805
YP_009167768.1 NC_027982_p3 bacteriophage portal protein phrog_12 portal protein head and packaging 1 1877 3142
YP_009167802.1 NC_027982_p37 hypothetical protein phrog_585 unknown function unknown function -1 27529 27942
YP_009167807.1 NC_027982_p42 phage replication protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 30302 31027
YP_009167774.1 NC_027982_p9 head-tail joining protein phrog_78 tail terminator connector 1 6006 6419
YP_009167788.1 NC_027982_p23 side tail fiber protein singleton unknown function unknown function 1 19106 19849
YP_009167771.1 NC_027982_p6 uncharacterized phage protein phrog_40 head-tail adaptor Ad1 connector 1 5000 5308
YP_009167776.1 NC_027982_p11 phage transcriptional regulator phrog_248 transcriptional activator transcription regulation 1 6856 7209
YP_009167793.1 NC_027982_p28 hypothetical protein singleton unknown function unknown function 1 22554 22775
YP_009167772.1 NC_027982_p7 hypothetical protein phrog_25 head closure Hc1 connector 1 5310 5642
YP_009167786.1 NC_027982_p21 hypothetical protein phrog_1009 unknown function unknown function 1 18342 18680
YP_009167784.1 NC_027982_p19 penicillin-binding protein 2 singleton unknown function unknown function 1 16976 17203
YP_009167791.1 NC_027982_p26 lysin phrog_291 endolysin lysis 1 20675 21931
YP_009167766.1 NC_027982_p1 bacteriophage terminase large subunit phrog_9 terminase large subunit head and packaging 1 3 1697
YP_009167783.1 NC_027982_p18 GDSL family lipase phrog_17955 esterase/lipase other 1 16140 16946
YP_009167785.1 NC_027982_p20 hypothetical protein phrog_6183 minor tail protein tail 1 17187 18341
YP_009167799.1 NC_027982_p34 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 25888 26232
YP_009167790.1 NC_027982_p25 holin phrog_2609 holin lysis 1 20208 20672
YP_009167795.1 NC_027982_p30 integrase phrog_95 integrase integration and excision -1 23307 24659
YP_009167773.1 NC_027982_p8 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 5626 6009
YP_009167805.1 NC_027982_p40 phage nucleotide-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 29045 29707
YP_009167769.1 NC_027982_p4 phage head maturation protease phrog_80 head maturation protease head and packaging 1 3207 3713
YP_009167809.1 NC_027982_p44 hypothetical protein phrog_31679 unknown function unknown function 1 31844 32002
YP_009167806.1 NC_027982_p41 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 29710 30288
YP_009167782.1 NC_027982_p17 cycloisomaltooligosaccharide glucanotransferase singleton unknown function unknown function 1 15304 16119