Genomic map of Pseudomonas phage JBD18 (NC_027986)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_027986
Definition
Pseudomonas phage JBD18, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Beetrevirus; Pseudomonas virus JD18.
DB of origin
REFSEQ
Length
39014
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
63.38
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009168326.1 NC_027986_p48 hypothetical protein phrog_1180 tail assembly chaperone tail 1 34531 34761
YP_009168288.1 NC_027986_p10 hypothetical protein phrog_6655 unknown function unknown function -1 4397 4702
YP_009168296.1 NC_027986_p18 hypothetical protein phrog_38063 unknown function unknown function -1 10160 10651
YP_009168281.1 NC_027986_p3 hypothetical protein phrog_5249 unknown function unknown function -1 1043 1510
YP_009168312.1 NC_027986_p34 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 21695 22072
YP_009168304.1 NC_027986_p26 lipoprotein phrog_462 lipoprotein other 1 13955 14344
YP_009168302.1 NC_027986_p24 hypothetical protein phrog_6410 unknown function unknown function 1 13156 13353
YP_009168285.1 NC_027986_p7 hypothetical protein phrog_4446 unknown function unknown function -1 3010 3201
YP_009168291.1 NC_027986_p13 integrase core domain protein phrog_310 transposase integration and excision -1 6208 7992
YP_009168314.1 NC_027986_p36 hypothetical protein phrog_12170 unknown function unknown function 1 23060 23689
YP_009168290.1 NC_027986_p12 hypothetical protein phrog_296 DNA transposition protein integration and excision -1 5042 6208
YP_009168308.1 NC_027986_p30 PF06074 family protein phrog_113 portal protein head and packaging 1 16928 18406
YP_009168322.1 NC_027986_p44 hypothetical protein phrog_687 structural protein head and packaging 1 30126 31082
YP_009168319.1 NC_027986_p41 hypothetical protein phrog_1442 tail assembly chaperone tail 1 25625 26131
YP_009168317.1 NC_027986_p39 hypothetical protein phrog_3357 unknown function unknown function 1 24658 24867
YP_009168306.1 NC_027986_p28 PF11985 family protein phrog_426 terminase small subunit head and packaging 1 14648 15223
YP_009168279.1 NC_027986_p1 mor transcription activator family protein phrog_532 late transcriptional activator transcription regulation -1 131 490
YP_009168295.1 NC_027986_p17 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation -1 9544 10032
YP_009168292.1 NC_027986_p14 hypothetical protein phrog_4623 unknown function unknown function -1 7996 8949
YP_009168282.1 NC_027986_p4 hypothetical protein phrog_3223 unknown function unknown function -1 1510 1701
YP_009168320.1 NC_027986_p42 hypothetical protein phrog_8022 unknown function unknown function 1 26128 26271
YP_009168298.1 NC_027986_p20 hypothetical protein singleton unknown function unknown function 1 11365 11832
YP_009168309.1 NC_027986_p31 phage Mu protein F-like protein phrog_220 minor head protein and DNA pilot head and packaging 1 18406 19656
YP_009168321.1 NC_027986_p43 prophage tail length tape measure protein phrog_24 tail length tape measure protein tail 1 26359 30126
YP_009168289.1 NC_027986_p11 hypothetical protein phrog_2043 unknown function unknown function -1 4699 5040
YP_009168286.1 NC_027986_p8 hypothetical protein phrog_3190 unknown function unknown function -1 3194 3727
YP_009168287.1 NC_027986_p9 hypothetical protein phrog_6574 unknown function unknown function -1 3717 4397
YP_009168325.1 NC_027986_p47 TIGR02218 family protein phrog_778 tail assembly protein tail 1 33703 34521
YP_009168327.1 NC_027986_p49 hypothetical protein phrog_1101 tail protein tail 1 34837 37185
YP_009168280.1 NC_027986_p2 PF06252 family protein phrog_286 unknown function unknown function -1 493 1056
YP_009168318.1 NC_027986_p40 hypothetical protein phrog_807 major tail protein with Ig-like domain tail 1 24871 25623
YP_009168284.1 NC_027986_p6 PF11363 family protein phrog_846 unknown function unknown function -1 2394 3047
YP_009168313.1 NC_027986_p35 hypothetical protein phrog_1005 major head protein head and packaging 1 22084 23013
YP_009168330.1 NC_027986_p52 hypothetical protein phrog_2623 unknown function unknown function 1 38694 38918
YP_009168311.1 NC_027986_p33 hypothetical protein phrog_976 head maturation protease head and packaging 1 20444 21691
YP_009168300.1 NC_027986_p22 hypothetical protein phrog_5479 unknown function unknown function 1 12375 12533
YP_009168328.1 NC_027986_p50 PF10983 family protein phrog_2875 virion structural protein head and packaging 1 37182 38333
YP_009168307.1 NC_027986_p29 terminase-like family protein phrog_2 terminase large subunit head and packaging 1 15225 16928
YP_009168310.1 NC_027986_p32 phage virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 19653 20225
YP_009168283.1 NC_027986_p5 PF10979 family protein phrog_421 unknown function unknown function -1 1703 2392
YP_009168323.1 NC_027986_p45 hypothetical protein phrog_687 structural protein head and packaging 1 31084 32007
YP_009168301.1 NC_027986_p23 transglycosylase SLT domain protein phrog_669 endolysin lysis 1 12530 13159
YP_009168329.1 NC_027986_p51 hypothetical protein phrog_2432 unknown function unknown function 1 38336 38620
YP_009168305.1 NC_027986_p27 hypothetical protein phrog_436 unknown function unknown function 1 14334 14642
YP_009168324.1 NC_027986_p46 hypothetical protein phrog_1082 tail assembly protein tail 1 32010 33716
YP_009168303.1 NC_027986_p25 hypothetical protein phrog_1403 Rz-like spanin lysis 1 13340 13951
YP_009168294.1 NC_027986_p16 hypothetical protein phrog_6525 unknown function unknown function -1 9291 9551
YP_009168293.1 NC_027986_p15 hypothetical protein phrog_1368 transcriptional regulator transcription regulation -1 8980 9294
YP_009168297.1 NC_027986_p19 BcepMufamily phage-associated protein phrog_925 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 10665 10895
YP_009168315.1 NC_027986_p37 PF07030 family protein phrog_195 head-tail adaptor connector 1 23689 24204
YP_009168299.1 NC_027986_p21 hypothetical protein phrog_1528 holin lysis 1 12076 12372
YP_009168316.1 NC_027986_p38 hypothetical protein phrog_209 portal protein head and packaging 1 24206 24661