| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027986 |
Definition |
Pseudomonas phage JBD18, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Beetrevirus; Pseudomonas virus JD18. |
DB of origin |
REFSEQ |
Length |
39014 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
63.38 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009168326.1 | NC_027986_p48 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 34531 | 34761 |
| YP_009168288.1 | NC_027986_p10 | hypothetical protein | phrog_6655 | unknown function | unknown function | -1 | 4397 | 4702 |
| YP_009168296.1 | NC_027986_p18 | hypothetical protein | phrog_38063 | unknown function | unknown function | -1 | 10160 | 10651 |
| YP_009168281.1 | NC_027986_p3 | hypothetical protein | phrog_5249 | unknown function | unknown function | -1 | 1043 | 1510 |
| YP_009168312.1 | NC_027986_p34 | hypothetical protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 21695 | 22072 |
| YP_009168304.1 | NC_027986_p26 | lipoprotein | phrog_462 | lipoprotein | other | 1 | 13955 | 14344 |
| YP_009168302.1 | NC_027986_p24 | hypothetical protein | phrog_6410 | unknown function | unknown function | 1 | 13156 | 13353 |
| YP_009168285.1 | NC_027986_p7 | hypothetical protein | phrog_4446 | unknown function | unknown function | -1 | 3010 | 3201 |
| YP_009168291.1 | NC_027986_p13 | integrase core domain protein | phrog_310 | transposase | integration and excision | -1 | 6208 | 7992 |
| YP_009168314.1 | NC_027986_p36 | hypothetical protein | phrog_12170 | unknown function | unknown function | 1 | 23060 | 23689 |
| YP_009168290.1 | NC_027986_p12 | hypothetical protein | phrog_296 | DNA transposition protein | integration and excision | -1 | 5042 | 6208 |
| YP_009168308.1 | NC_027986_p30 | PF06074 family protein | phrog_113 | portal protein | head and packaging | 1 | 16928 | 18406 |
| YP_009168322.1 | NC_027986_p44 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 30126 | 31082 |
| YP_009168319.1 | NC_027986_p41 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 25625 | 26131 |
| YP_009168317.1 | NC_027986_p39 | hypothetical protein | phrog_3357 | unknown function | unknown function | 1 | 24658 | 24867 |
| YP_009168306.1 | NC_027986_p28 | PF11985 family protein | phrog_426 | terminase small subunit | head and packaging | 1 | 14648 | 15223 |
| YP_009168279.1 | NC_027986_p1 | mor transcription activator family protein | phrog_532 | late transcriptional activator | transcription regulation | -1 | 131 | 490 |
| YP_009168295.1 | NC_027986_p17 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | -1 | 9544 | 10032 |
| YP_009168292.1 | NC_027986_p14 | hypothetical protein | phrog_4623 | unknown function | unknown function | -1 | 7996 | 8949 |
| YP_009168282.1 | NC_027986_p4 | hypothetical protein | phrog_3223 | unknown function | unknown function | -1 | 1510 | 1701 |
| YP_009168320.1 | NC_027986_p42 | hypothetical protein | phrog_8022 | unknown function | unknown function | 1 | 26128 | 26271 |
| YP_009168298.1 | NC_027986_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11365 | 11832 |
| YP_009168309.1 | NC_027986_p31 | phage Mu protein F-like protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 18406 | 19656 |
| YP_009168321.1 | NC_027986_p43 | prophage tail length tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 26359 | 30126 |
| YP_009168289.1 | NC_027986_p11 | hypothetical protein | phrog_2043 | unknown function | unknown function | -1 | 4699 | 5040 |
| YP_009168286.1 | NC_027986_p8 | hypothetical protein | phrog_3190 | unknown function | unknown function | -1 | 3194 | 3727 |
| YP_009168287.1 | NC_027986_p9 | hypothetical protein | phrog_6574 | unknown function | unknown function | -1 | 3717 | 4397 |
| YP_009168325.1 | NC_027986_p47 | TIGR02218 family protein | phrog_778 | tail assembly protein | tail | 1 | 33703 | 34521 |
| YP_009168327.1 | NC_027986_p49 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 34837 | 37185 |
| YP_009168280.1 | NC_027986_p2 | PF06252 family protein | phrog_286 | unknown function | unknown function | -1 | 493 | 1056 |
| YP_009168318.1 | NC_027986_p40 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 24871 | 25623 |
| YP_009168284.1 | NC_027986_p6 | PF11363 family protein | phrog_846 | unknown function | unknown function | -1 | 2394 | 3047 |
| YP_009168313.1 | NC_027986_p35 | hypothetical protein | phrog_1005 | major head protein | head and packaging | 1 | 22084 | 23013 |
| YP_009168330.1 | NC_027986_p52 | hypothetical protein | phrog_2623 | unknown function | unknown function | 1 | 38694 | 38918 |
| YP_009168311.1 | NC_027986_p33 | hypothetical protein | phrog_976 | head maturation protease | head and packaging | 1 | 20444 | 21691 |
| YP_009168300.1 | NC_027986_p22 | hypothetical protein | phrog_5479 | unknown function | unknown function | 1 | 12375 | 12533 |
| YP_009168328.1 | NC_027986_p50 | PF10983 family protein | phrog_2875 | virion structural protein | head and packaging | 1 | 37182 | 38333 |
| YP_009168307.1 | NC_027986_p29 | terminase-like family protein | phrog_2 | terminase large subunit | head and packaging | 1 | 15225 | 16928 |
| YP_009168310.1 | NC_027986_p32 | phage virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 19653 | 20225 |
| YP_009168283.1 | NC_027986_p5 | PF10979 family protein | phrog_421 | unknown function | unknown function | -1 | 1703 | 2392 |
| YP_009168323.1 | NC_027986_p45 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 31084 | 32007 |
| YP_009168301.1 | NC_027986_p23 | transglycosylase SLT domain protein | phrog_669 | endolysin | lysis | 1 | 12530 | 13159 |
| YP_009168329.1 | NC_027986_p51 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 38336 | 38620 |
| YP_009168305.1 | NC_027986_p27 | hypothetical protein | phrog_436 | unknown function | unknown function | 1 | 14334 | 14642 |
| YP_009168324.1 | NC_027986_p46 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 32010 | 33716 |
| YP_009168303.1 | NC_027986_p25 | hypothetical protein | phrog_1403 | Rz-like spanin | lysis | 1 | 13340 | 13951 |
| YP_009168294.1 | NC_027986_p16 | hypothetical protein | phrog_6525 | unknown function | unknown function | -1 | 9291 | 9551 |
| YP_009168293.1 | NC_027986_p15 | hypothetical protein | phrog_1368 | transcriptional regulator | transcription regulation | -1 | 8980 | 9294 |
| YP_009168297.1 | NC_027986_p19 | BcepMufamily phage-associated protein | phrog_925 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 10665 | 10895 |
| YP_009168315.1 | NC_027986_p37 | PF07030 family protein | phrog_195 | head-tail adaptor | connector | 1 | 23689 | 24204 |
| YP_009168299.1 | NC_027986_p21 | hypothetical protein | phrog_1528 | holin | lysis | 1 | 12076 | 12372 |
| YP_009168316.1 | NC_027986_p38 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 24206 | 24661 |