| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027988 |
Definition |
Citrobacter phage CVT22, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
47636 |
Host Name |
Citrobacter sp. TM1552 |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
41.63 |
Number of singletons |
46 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009168439.1 | NC_027988_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36286 | 36531 |
| YP_009168391.1 | NC_027988_p8 | hypothetical protein | phrog_17024 | unknown function | unknown function | 1 | 8227 | 8598 |
| YP_009168424.1 | NC_027988_p41 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28441 | 30348 |
| YP_009168400.1 | NC_027988_p17 | endolysin | phrog_7 | endolysin | lysis | 1 | 19810 | 20358 |
| YP_009168434.1 | NC_027988_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34552 | 34779 |
| YP_009168453.1 | NC_027988_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43140 | 43277 |
| YP_009168433.1 | NC_027988_p50 | ATP grasp protein | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | -1 | 33796 | 34551 |
| YP_009168462.1 | NC_027988_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45472 | 45657 |
| YP_009168407.1 | NC_027988_p25 | hypothetical protein | phrog_5335 | unknown function | unknown function | 1 | 22386 | 22910 |
| YP_009168432.1 | NC_027988_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33608 | 33799 |
| YP_009168382.1 | NC_027988_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45892 | 46029 |
| YP_009168423.2 | NC_027988_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28244 | 28375 |
| YP_009168381.1 | NC_027988_p81 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45654 | 45890 |
| YP_009168386.1 | NC_027988_p3 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 2731 | 4335 |
| YP_009168427.1 | NC_027988_p44 | hypothetical protein | phrog_22041 | unknown function | unknown function | -1 | 30820 | 31068 |
| YP_009168430.1 | NC_027988_p47 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | -1 | 31664 | 33319 |
| YP_009168431.1 | NC_027988_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33367 | 33597 |
| YP_009168457.1 | NC_027988_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44288 | 44488 |
| YP_009168425.1 | NC_027988_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30345 | 30554 |
| YP_009168451.1 | NC_027988_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42390 | 42614 |
| YP_009168394.1 | NC_027988_p11 | head closure protein | phrog_8094 | tail appendage | tail | 1 | 9585 | 11885 |
| YP_009168438.1 | NC_027988_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36045 | 36284 |
| YP_009168420.1 | NC_027988_p37 | hypothetical protein | phrog_862 | unknown function | unknown function | -1 | 27032 | 27745 |
| YP_009168403.1 | NC_027988_p21 | endonuclease | phrog_4590 | unknown function | unknown function | 1 | 20956 | 21237 |
| YP_009168458.1 | NC_027988_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44488 | 44643 |
| YP_009168440.1 | NC_027988_p57 | hypothetical protein | phrog_11055 | unknown function | unknown function | -1 | 36524 | 37084 |
| YP_009168409.1 | NC_027988_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23324 | 23476 |
| YP_009168397.1 | NC_027988_p14 | hypothetical protein | phrog_18427 | unknown function | unknown function | 1 | 12719 | 17440 |
| YP_009168448.1 | NC_027988_p65 | amidotransferase | phrog_7218 | glutamine amidotransferase | moron, auxiliary metabolic gene and host takeover | -1 | 40198 | 40842 |
| YP_009168415.1 | NC_027988_p32 | hypothetical protein | phrog_1312 | unknown function | unknown function | -1 | 25153 | 25305 |
| YP_009168452.2 | NC_027988_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42893 | 43249 |
| YP_009170645.1 | NC_027988_p19 | o-spanin | singleton | Rz-like spanin | lysis | 1 | 20577 | 20822 |
| YP_009170646.1 | NC_027988_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42614 | 42757 |
| YP_009168441.1 | NC_027988_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37085 | 37324 |
| YP_009168445.1 | NC_027988_p62 | amidotransferase | phrog_4736 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 38576 | 39754 |
| YP_009168416.1 | NC_027988_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25375 | 25608 |
| YP_009168417.1 | NC_027988_p34 | HNHc superfamily protein | phrog_3106 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25622 | 25996 |
| YP_009168422.1 | NC_027988_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28002 | 28256 |
| YP_009168413.1 | NC_027988_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24687 | 24842 |
| YP_009168443.1 | NC_027988_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37548 | 37751 |
| YP_009168384.1 | NC_027988_p1 | tail protein | phrog_18522 | tail protein | tail | 1 | 555 | 2237 |
| YP_009168437.1 | NC_027988_p54 | amidoligase | phrog_7469 | amidoligase enzyme | other | -1 | 35239 | 36045 |
| YP_009168393.1 | NC_027988_p10 | hypothetical protein | phrog_9082 | unknown function | unknown function | 1 | 9409 | 9576 |
| YP_009168418.1 | NC_027988_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26001 | 26189 |
| YP_009168419.1 | NC_027988_p36 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 26186 | 26980 |
| YP_009168449.1 | NC_027988_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40843 | 41064 |
| YP_009168456.1 | NC_027988_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43860 | 44090 |
| YP_009168428.1 | NC_027988_p45 | sigma factor | phrog_1740 | RNA polymerase sigma factor | transcription regulation | -1 | 31061 | 31540 |
| YP_009168461.1 | NC_027988_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45296 | 45475 |
| YP_009168398.1 | NC_027988_p15 | hypothetical protein | phrog_18587 | unknown function | unknown function | 1 | 17443 | 19605 |
| YP_009168389.1 | NC_027988_p6 | porin superfamily protein | phrog_7931 | unknown function | unknown function | 1 | 6521 | 7267 |
| YP_009168410.1 | NC_027988_p28 | AdoMet-MTase | singleton | unknown function | unknown function | -1 | 23463 | 23681 |
| YP_009168408.2 | NC_027988_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22894 | 23061 |
| YP_009168444.1 | NC_027988_p61 | COOH-NH2 ligase | phrog_3815 | COOH.NH2 ligase | other | -1 | 37753 | 38556 |
| YP_009168426.2 | NC_027988_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30554 | 30820 |
| YP_009168429.1 | NC_027988_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31540 | 31662 |
| YP_009168385.1 | NC_027988_p2 | hypothetical protein | phrog_8035 | unknown function | unknown function | 1 | 2234 | 2731 |
| YP_009168399.1 | NC_027988_p16 | holin | singleton | holin | lysis | 1 | 19632 | 19835 |
| YP_009168392.1 | NC_027988_p9 | adaptor protein | phrog_7592 | tail protein | tail | 1 | 8651 | 9409 |
| YP_009168395.1 | NC_027988_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11885 | 12175 |
| YP_009168455.1 | NC_027988_p73 | hypothetical protein | phrog_3878 | unknown function | unknown function | -1 | 43477 | 43860 |
| YP_009168388.1 | NC_027988_p5 | hypothetical protein | phrog_8956 | unknown function | unknown function | 1 | 6102 | 6365 |
| YP_009168442.1 | NC_027988_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37324 | 37548 |
| YP_009168390.1 | NC_027988_p7 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 7278 | 8216 |
| YP_009168459.1 | NC_027988_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44653 | 44868 |
| YP_009168396.1 | NC_027988_p13 | hypothetical protein | phrog_8168 | unknown function | unknown function | 1 | 12179 | 12709 |
| YP_009168446.1 | NC_027988_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39768 | 39980 |
| YP_009168404.1 | NC_027988_p22 | hypothetical protein | phrog_9732 | unknown function | unknown function | 1 | 21241 | 21708 |
| YP_009168435.2 | NC_027988_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34779 | 35012 |
| YP_009168411.2 | NC_027988_p29 | exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 23671 | 24609 |
| YP_009168436.1 | NC_027988_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35012 | 35239 |
| YP_009168447.1 | NC_027988_p64 | hypothetical protein | phrog_25928 | unknown function | unknown function | -1 | 39981 | 40211 |
| YP_009168454.1 | NC_027988_p72 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43277 | 43480 |
| YP_009168450.1 | NC_027988_p67 | hypothetical protein | phrog_34254 | unknown function | unknown function | -1 | 41061 | 42389 |
| YP_009168405.1 | NC_027988_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21717 | 22157 |
| YP_009168421.1 | NC_027988_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27790 | 28005 |
| YP_009168402.1 | NC_027988_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20819 | 20956 |
| YP_009168387.1 | NC_027988_p4 | portal protein | phrog_332 | head-tail adaptor | connector | 1 | 4351 | 6102 |
| YP_009168406.1 | NC_027988_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22171 | 22374 |
| YP_009168414.1 | NC_027988_p31 | AAT_I superfamily protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24842 | 25153 |
| YP_009168383.1 | NC_027988_p83 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46525 | 47136 |
| YP_009168460.2 | NC_027988_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44849 | 45082 |
| YP_009168401.1 | NC_027988_p18 | i-spanin | singleton | unknown function | unknown function | 1 | 20348 | 20674 |