| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027991 |
Definition |
Staphylococcus phage SA1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; unclassified Ounavirinae. |
DB of origin |
REFSEQ |
Length |
147303 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
109 |
%GC |
45.82 |
Number of singletons |
6 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009168622.1 | NC_027991_p6 | hypothetical protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 15861 | 16760 |
| YP_009168717.1 | NC_027991_p101 | hypothetical protein | phrog_4040 | unknown function | unknown function | -1 | 140374 | 140718 |
| YP_009168639.1 | NC_027991_p23 | phage conserved protein | phrog_2143 | unknown function | unknown function | 1 | 61381 | 61938 |
| YP_009168721.1 | NC_027991_p105 | tail protein | phrog_3995 | tail protein | tail | -1 | 142306 | 143190 |
| YP_009168702.1 | NC_027991_p86 | hypothetical protein | phrog_3849 | unknown function | unknown function | 1 | 126468 | 126779 |
| YP_009168709.1 | NC_027991_p93 | hypothetical protein | phrog_4318 | unknown function | unknown function | 1 | 133937 | 134278 |
| YP_009168698.1 | NC_027991_p82 | rIIB protein | phrog_609 | RIIB lysis inhibitor | lysis | 1 | 122735 | 123844 |
| YP_009168618.1 | NC_027991_p2 | conserved tail assembly protein | phrog_778 | tail assembly protein | tail | 1 | 2115 | 2933 |
| YP_009168628.1 | NC_027991_p12 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 24133 | 26070 |
| YP_009168697.1 | NC_027991_p81 | rIIA protein | phrog_612 | RIIA lysis inhibitor | lysis | 1 | 120289 | 122655 |
| YP_009168620.1 | NC_027991_p4 | hypothetical protein | phrog_7226 | unknown function | unknown function | 1 | 12068 | 13903 |
| YP_009168633.1 | NC_027991_p17 | capsid protein | phrog_29 | major head protein | head and packaging | -1 | 36262 | 37326 |
| YP_009168645.1 | NC_027991_p29 | head maturation protease | phrog_53 | head maturation protease | head and packaging | 1 | 67672 | 69018 |
| YP_009168668.1 | NC_027991_p52 | hypothetical protein | phrog_4422 | unknown function | unknown function | -1 | 88944 | 89459 |
| YP_009168677.1 | NC_027991_p61 | hypothetical protein | phrog_4251 | minor tail protein | tail | 1 | 99119 | 99931 |
| YP_009168706.1 | NC_027991_p90 | hypothetical protein | phrog_4375 | unknown function | unknown function | 1 | 131417 | 131749 |
| YP_009168678.1 | NC_027991_p62 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 99994 | 100737 |
| YP_009168623.1 | NC_027991_p7 | hypothetical protein | phrog_8098 | unknown function | unknown function | -1 | 16750 | 17385 |
| YP_009168626.1 | NC_027991_p10 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 21976 | 23313 |
| YP_009168680.1 | NC_027991_p64 | hypothetical protein | phrog_3877 | unknown function | unknown function | 1 | 103398 | 104255 |
| YP_009168695.1 | NC_027991_p79 | nictotinate phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 117932 | 119713 |
| YP_009168653.1 | NC_027991_p37 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 73840 | 74286 |
| YP_009168669.1 | NC_027991_p53 | hypothetical protein | phrog_4116 | unknown function | unknown function | -1 | 89473 | 89832 |
| YP_009168687.1 | NC_027991_p71 | hypothetical protein | phrog_2652 | unknown function | unknown function | 1 | 109731 | 110072 |
| YP_009168705.1 | NC_027991_p89 | hypothetical protein | phrog_4190 | unknown function | unknown function | 1 | 130523 | 131035 |
| YP_009168724.1 | NC_027991_p108 | hypothetical protein | phrog_4114 | unknown function | unknown function | 1 | 144816 | 145187 |
| YP_009168699.1 | NC_027991_p83 | phage conserved protein | phrog_600 | unknown function | unknown function | 1 | 123945 | 124493 |
| YP_009168725.1 | NC_027991_p109 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 145270 | 146685 |
| YP_009168661.1 | NC_027991_p45 | phage conserved protein | phrog_6 | baseplate wedge subunit | tail | 1 | 80369 | 81838 |
| YP_009168713.1 | NC_027991_p97 | hypothetical protein | phrog_4343 | unknown function | unknown function | -1 | 138460 | 138963 |
| YP_009168715.1 | NC_027991_p99 | unknown | singleton | unknown function | unknown function | 1 | 139635 | 139979 |
| YP_009168671.1 | NC_027991_p55 | hypothetical protein | phrog_5926 | unknown function | unknown function | -1 | 91233 | 91673 |
| YP_009168708.1 | NC_027991_p92 | hypothetical protein | phrog_3303 | unknown function | unknown function | 1 | 133002 | 133544 |
| YP_009168640.1 | NC_027991_p24 | hypothetical protein | phrog_2114 | unknown function | unknown function | 1 | 62390 | 63124 |
| YP_009168627.1 | NC_027991_p11 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 23368 | 23964 |
| YP_009168679.1 | NC_027991_p63 | phage DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 100939 | 102924 |
| YP_009168672.1 | NC_027991_p56 | hypothetical protein | phrog_4652 | unknown function | unknown function | -1 | 91676 | 92263 |
| YP_009168641.1 | NC_027991_p25 | large subunit terminase | phrog_979 | terminase large subunit | head and packaging | 1 | 63743 | 65344 |
| YP_009168712.1 | NC_027991_p96 | hypothetical protein | phrog_4713 | unknown function | unknown function | -1 | 137641 | 138105 |
| YP_009168636.1 | NC_027991_p20 | phage terminase large subunit | phrog_15 | terminase large subunit | head and packaging | -1 | 41003 | 41881 |
| YP_009168649.1 | NC_027991_p33 | phage conserved protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 71017 | 71499 |
| YP_009168638.1 | NC_027991_p22 | oxidoreductase | singleton | unknown function | unknown function | -1 | 57676 | 58074 |
| YP_009168673.1 | NC_027991_p57 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 92691 | 93830 |
| YP_009168651.1 | NC_027991_p35 | hypothetical protein | phrog_4082 | unknown function | unknown function | 1 | 71872 | 72471 |
| YP_009168657.1 | NC_027991_p41 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 78010 | 78351 |
| YP_009168675.1 | NC_027991_p59 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 95739 | 98471 |
| YP_009168621.1 | NC_027991_p5 | hypothetical protein | phrog_873 | endolysin | head and packaging | 1 | 14308 | 15021 |
| YP_009168642.1 | NC_027991_p26 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 65362 | 66828 |
| YP_009168663.1 | NC_027991_p47 | tail fiber protein | phrog_2097 | tail fiber protein | tail | 1 | 83003 | 84169 |
| YP_009168682.1 | NC_027991_p66 | exodeoxyribonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 104318 | 105358 |
| YP_009168630.1 | NC_027991_p14 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | -1 | 33260 | 34399 |
| YP_009168722.1 | NC_027991_p106 | hypothetical protein | phrog_4463 | unknown function | unknown function | -1 | 143187 | 143558 |
| YP_009168632.1 | NC_027991_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36169 | 38172 |
| YP_009168674.1 | NC_027991_p58 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 95254 | 95757 |
| YP_009168664.1 | NC_027991_p48 | tail fiber protein | phrog_4277 | tail fiber protein | tail | 1 | 84219 | 86558 |
| YP_009168656.1 | NC_027991_p40 | phage conserved protein | phrog_3721 | unknown function | unknown function | 1 | 77213 | 78010 |
| YP_009168684.1 | NC_027991_p68 | hypothetical protein | phrog_2144 | MazG-like pyrophosphatase | other | 1 | 106091 | 106846 |
| YP_009168719.1 | NC_027991_p103 | hypothetical protein | phrog_4266 | unknown function | unknown function | -1 | 141392 | 141790 |
| YP_009168690.1 | NC_027991_p74 | hypothetical protein | phrog_4382 | unknown function | unknown function | 1 | 114127 | 114522 |
| YP_009168660.1 | NC_027991_p44 | phage conserved protein | phrog_120 | baseplate wedge subunit | tail | 1 | 79950 | 80369 |
| YP_009168665.1 | NC_027991_p49 | hypothetical protein | phrog_4038 | unknown function | unknown function | 1 | 86832 | 87203 |
| YP_009168617.1 | NC_027991_p1 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 417 | 2105 |
| YP_009168700.1 | NC_027991_p84 | hypothetical protein | phrog_3970 | polynucleotide kinase | other | 1 | 124471 | 125166 |
| YP_009168710.1 | NC_027991_p94 | hypothetical protein | phrog_4725 | unknown function | unknown function | 1 | 134498 | 135028 |
| YP_009168655.1 | NC_027991_p39 | phage conserved protein | phrog_4036 | tail length tape measure protein | tail | 1 | 75000 | 77213 |
| YP_009168644.1 | NC_027991_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 67328 | 67660 |
| YP_009168666.1 | NC_027991_p50 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 87240 | 88139 |
| YP_009168658.1 | NC_027991_p42 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 78351 | 79181 |
| YP_009168688.1 | NC_027991_p72 | ribonucleoside diphosphate reductase beta chain | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 110069 | 111142 |
| YP_009168624.1 | NC_027991_p8 | primase | singleton | unknown function | unknown function | -1 | 18090 | 19070 |
| YP_009168703.1 | NC_027991_p87 | phage conserved protein | phrog_335 | phosphatase | other | 1 | 127901 | 128686 |
| YP_009168629.1 | NC_027991_p13 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 26405 | 27880 |
| YP_009168692.1 | NC_027991_p76 | hypothetical protein | phrog_4462 | unknown function | unknown function | 1 | 115835 | 116155 |
| YP_009168637.1 | NC_027991_p21 | recombination-associated protein | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | -1 | 47798 | 48874 |
| YP_009168631.1 | NC_027991_p15 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | -1 | 34913 | 35539 |
| YP_009168718.1 | NC_027991_p102 | hypothetical protein | phrog_4348 | unknown function | unknown function | -1 | 141004 | 141399 |
| YP_009168720.1 | NC_027991_p104 | lysin | phrog_7 | endolysin | lysis | -1 | 141842 | 142306 |
| YP_009168650.1 | NC_027991_p34 | hypothetical protein | phrog_2874 | unknown function | unknown function | 1 | 71496 | 71897 |
| YP_009168667.1 | NC_027991_p51 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 88141 | 88686 |
| YP_009168701.1 | NC_027991_p85 | hypothetical protein | phrog_2267 | unknown function | unknown function | 1 | 125178 | 125642 |
| YP_009168696.1 | NC_027991_p80 | hypothetical protein | phrog_4262 | unknown function | unknown function | 1 | 119767 | 120102 |
| YP_009168689.1 | NC_027991_p73 | anaerobic nucleoside diphosphate reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 111632 | 113776 |
| YP_009168693.1 | NC_027991_p77 | hypothetical protein | phrog_3500 | unknown function | unknown function | 1 | 116207 | 116722 |
| YP_009168646.1 | NC_027991_p30 | hypothetical protein | phrog_4146 | tail protease | other | 1 | 69030 | 69407 |
| YP_009168694.1 | NC_027991_p78 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 117005 | 117886 |
| YP_009168704.1 | NC_027991_p88 | hypothetical protein | phrog_4495 | unknown function | unknown function | 1 | 129676 | 130056 |
| YP_009168634.1 | NC_027991_p18 | prohead protease ClpP | phrog_53 | head maturation protease | head and packaging | -1 | 37749 | 39065 |
| YP_009168619.1 | NC_027991_p3 | hypothetical protein | phrog_21247 | tail protein | tail | 1 | 3882 | 5456 |
| YP_009168648.1 | NC_027991_p32 | hypothetical protein | phrog_1732 | unknown function | unknown function | 1 | 70568 | 71017 |
| YP_009168714.1 | NC_027991_p98 | hypothetical protein | phrog_5380 | unknown function | unknown function | -1 | 139175 | 139720 |
| YP_009168707.1 | NC_027991_p91 | hypothetical protein | phrog_4327 | unknown function | unknown function | 1 | 132198 | 132602 |
| YP_009168686.1 | NC_027991_p70 | ribonucleoside triphosphate reductase alpha chain | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 107525 | 109759 |
| YP_009168625.1 | NC_027991_p9 | primase | singleton | unknown function | unknown function | -1 | 19010 | 20674 |
| YP_009168654.1 | NC_027991_p38 | hypothetical protein | phrog_1613 | tail assembly chaperone | tail | 1 | 74360 | 74758 |
| YP_009168691.1 | NC_027991_p75 | anaerobic NTP reductase | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 114828 | 115313 |
| YP_009168647.1 | NC_027991_p31 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 69441 | 70547 |
| YP_009168670.1 | NC_027991_p54 | hypothetical protein | phrog_4332 | unknown function | unknown function | -1 | 90340 | 90723 |
| YP_009168652.1 | NC_027991_p36 | phage conserved structural protein | phrog_205 | tail sheath | tail | 1 | 72472 | 73824 |
| YP_009168723.1 | NC_027991_p107 | hypothetical protein | phrog_4034 | unknown function | unknown function | -1 | 143606 | 144196 |
| YP_009168716.1 | NC_027991_p100 | hypothetical protein | phrog_4109 | unknown function | unknown function | -1 | 139793 | 140374 |
| YP_009168685.1 | NC_027991_p69 | hypothetical protein | phrog_4007 | unknown function | unknown function | 1 | 106827 | 107150 |
| YP_009168711.1 | NC_027991_p95 | hypothetical protein | phrog_4330 | unknown function | unknown function | -1 | 137079 | 137627 |
| YP_009168681.1 | NC_027991_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 103794 | 104165 |
| YP_009168635.1 | NC_027991_p19 | phage portal protein | phrog_21 | portal protein | head and packaging | -1 | 39062 | 40741 |
| YP_009168662.1 | NC_027991_p46 | hypothetical protein | phrog_4017 | baseplate protein | tail | 1 | 81841 | 82698 |
| YP_009168643.1 | NC_027991_p27 | hypothetical protein | phrog_3977 | unknown function | unknown function | 1 | 66828 | 67328 |
| YP_009168659.1 | NC_027991_p43 | baseplate protein | phrog_11 | baseplate spike | tail | 1 | 79327 | 79950 |
| YP_009168683.1 | NC_027991_p67 | hypothetical protein | phrog_447 | NAD synthetase | other | 1 | 105348 | 105845 |
| YP_009168676.1 | NC_027991_p60 | hypothetical protein | phrog_4039 | unknown function | unknown function | 1 | 98695 | 99117 |