| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_027992 |
Definition |
Pseudomonas phage JBD25, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
39552 |
Host Name |
Pseudomonas |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
62.53 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009168742.1 | NC_027992_p17 | hypothetical protein | phrog_6525 | unknown function | unknown function | -1 | 9829 | 10089 |
| YP_009168746.1 | NC_027992_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11752 | 11910 |
| YP_009168771.1 | NC_027992_p46 | tape measure domain protein | phrog_24 | tail length tape measure protein | tail | 1 | 27322 | 30951 |
| YP_009168759.1 | NC_027992_p34 | phage Mu protein F-like protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 19766 | 21004 |
| YP_009168752.1 | NC_027992_p27 | hypothetical protein | phrog_6410 | unknown function | unknown function | 1 | 14523 | 14741 |
| YP_009168733.1 | NC_027992_p8 | hypothetical protein | phrog_4446 | unknown function | unknown function | -1 | 3557 | 3757 |
| YP_009168729.1 | NC_027992_p4 | hypothetical protein | phrog_5249 | unknown function | unknown function | -1 | 1590 | 2057 |
| YP_009168728.1 | NC_027992_p3 | PF06252 family protein | phrog_286 | unknown function | unknown function | -1 | 1037 | 1603 |
| YP_009168738.1 | NC_027992_p13 | hypothetical protein | phrog_296 | DNA transposition protein | integration and excision | -1 | 5577 | 6743 |
| YP_009168751.1 | NC_027992_p26 | transglycosylase SLT domain protein | phrog_669 | endolysin | lysis | 1 | 13897 | 14526 |
| YP_009168776.1 | NC_027992_p51 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 35362 | 35601 |
| YP_009168778.1 | NC_027992_p53 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 35806 | 38013 |
| YP_009168748.1 | NC_027992_p23 | hypothetical protein | phrog_21394 | unknown function | unknown function | -1 | 12898 | 13272 |
| YP_009168747.1 | NC_027992_p22 | lipoprotein | phrog_10370 | lipoprotein | other | 1 | 11928 | 12425 |
| YP_009168753.1 | NC_027992_p28 | hypothetical protein | phrog_1403 | Rz-like spanin | lysis | 1 | 14728 | 15351 |
| YP_009168764.1 | NC_027992_p39 | hypothetical protein | phrog_9946 | unknown function | unknown function | 1 | 24361 | 24669 |
| YP_009168732.1 | NC_027992_p7 | PF11363 family protein | phrog_846 | unknown function | unknown function | -1 | 2941 | 3594 |
| YP_009168730.1 | NC_027992_p5 | hypothetical protein | phrog_3223 | unknown function | unknown function | -1 | 2057 | 2248 |
| YP_009168739.1 | NC_027992_p14 | integrase core domain protein | phrog_310 | transposase | integration and excision | -1 | 6743 | 8527 |
| YP_009168740.1 | NC_027992_p15 | hypothetical protein | phrog_4623 | unknown function | unknown function | -1 | 8531 | 9508 |
| YP_009168760.1 | NC_027992_p35 | phage virion morphogenesis family protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 21006 | 21581 |
| YP_009168766.1 | NC_027992_p41 | hypothetical protein | phrog_209 | portal protein | head and packaging | 1 | 25184 | 25636 |
| YP_009168770.1 | NC_027992_p45 | hypothetical protein | phrog_11261 | unknown function | unknown function | -1 | 27023 | 27205 |
| YP_009168731.1 | NC_027992_p6 | PF10979 family protein | phrog_421 | unknown function | unknown function | -1 | 2250 | 2939 |
| YP_009168734.1 | NC_027992_p9 | hypothetical protein | phrog_3190 | unknown function | unknown function | -1 | 3750 | 4283 |
| YP_009168768.1 | NC_027992_p43 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 25843 | 26583 |
| YP_009168749.1 | NC_027992_p24 | hypothetical protein | phrog_1528 | holin | lysis | 1 | 13443 | 13739 |
| YP_009168774.1 | NC_027992_p49 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 32839 | 34542 |
| YP_009168754.1 | NC_027992_p29 | PF10805 family protein | phrog_736 | unknown function | unknown function | 1 | 15351 | 15671 |
| YP_009168769.1 | NC_027992_p44 | hypothetical protein | phrog_1442 | tail assembly chaperone | tail | 1 | 26586 | 27068 |
| YP_009168726.1 | NC_027992_p1 | mor transcription activator family protein | phrog_532 | late transcriptional activator | transcription regulation | -1 | 124 | 492 |
| YP_009168755.1 | NC_027992_p30 | hypothetical protein | phrog_436 | unknown function | unknown function | 1 | 15668 | 15970 |
| YP_009168735.1 | NC_027992_p10 | hypothetical protein | phrog_6574 | unknown function | unknown function | -1 | 4273 | 4953 |
| YP_009168750.1 | NC_027992_p25 | hypothetical protein | phrog_5479 | unknown function | unknown function | 1 | 13742 | 13900 |
| YP_009168727.1 | NC_027992_p2 | hypothetical protein | phrog_2161 | unknown function | unknown function | -1 | 489 | 1037 |
| YP_009168741.1 | NC_027992_p16 | hypothetical protein | phrog_1368 | transcriptional regulator | transcription regulation | -1 | 9518 | 9832 |
| YP_009168745.1 | NC_027992_p20 | BcepMufamily phage-associated protein | phrog_925 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 11203 | 11433 |
| YP_009168767.1 | NC_027992_p42 | hypothetical protein | phrog_3357 | unknown function | unknown function | 1 | 25633 | 25836 |
| YP_009168761.1 | NC_027992_p36 | Mu-like prophage I protein | phrog_328 | head maturation protease | head and packaging | 1 | 21792 | 22901 |
| YP_009168772.1 | NC_027992_p47 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 30958 | 31914 |
| YP_009168773.1 | NC_027992_p48 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 31916 | 32839 |
| YP_009168780.1 | NC_027992_p55 | hypothetical protein | phrog_2432 | unknown function | unknown function | 1 | 39164 | 39448 |
| YP_009168744.1 | NC_027992_p19 | hypothetical protein | phrog_25086 | unknown function | unknown function | 1 | 10824 | 11012 |
| YP_009168743.1 | NC_027992_p18 | hypothetical protein | phrog_101 | CII-like transcriptional activator | transcription regulation | -1 | 10082 | 10858 |
| YP_009168757.1 | NC_027992_p32 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 16523 | 18196 |
| YP_009168775.1 | NC_027992_p50 | TIGR02218 family protein | phrog_778 | tail assembly protein | tail | 1 | 34532 | 35353 |
| YP_009168737.1 | NC_027992_p12 | hypothetical protein | phrog_2043 | unknown function | unknown function | -1 | 5234 | 5575 |
| YP_009168756.1 | NC_027992_p31 | PF11985 family protein | phrog_426 | terminase small subunit | head and packaging | 1 | 15973 | 16521 |
| YP_009168765.1 | NC_027992_p40 | PF07030 family protein | phrog_195 | head-tail adaptor | connector | 1 | 24672 | 25187 |
| YP_009168763.1 | NC_027992_p38 | Mu-like prophage major head subunit gpT | phrog_371 | major head protein | head and packaging | 1 | 23326 | 24222 |
| YP_009168758.1 | NC_027992_p33 | PF06074 family protein | phrog_113 | portal protein | head and packaging | 1 | 18190 | 19776 |
| YP_009168777.1 | NC_027992_p52 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 35598 | 35816 |
| YP_009168779.1 | NC_027992_p54 | PF10983 family protein | phrog_2875 | virion structural protein | head and packaging | 1 | 38010 | 39161 |
| YP_009168736.1 | NC_027992_p11 | hypothetical protein | phrog_6655 | unknown function | unknown function | -1 | 4953 | 5237 |
| YP_009168762.1 | NC_027992_p37 | hypothetical protein | phrog_1731 | virion structural protein | head and packaging | 1 | 22907 | 23311 |