| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028449 |
Definition |
Escherichia phage PA2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Sepvirinae; Oslovirus. |
DB of origin |
REFSEQ |
Length |
63569 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
50.16 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009180925.1 | NC_028449_p43 | hypothetical protein | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 25043 | 25492 |
| YP_009180900.1 | NC_028449_p18 | hypothetical protein | phrog_1832 | released from the phage upon host infection | other | -1 | 8412 | 8630 |
| YP_009180956.1 | NC_028449_p74 | tail fiber protein | phrog_496 | tail fiber protein | tail | 1 | 48395 | 49663 |
| YP_009180935.1 | NC_028449_p53 | hypothetical protein | phrog_8301 | unknown function | unknown function | 1 | 31309 | 31728 |
| YP_009180922.1 | NC_028449_p40 | hypothetical protein | phrog_1347 | unknown function | unknown function | 1 | 22191 | 22568 |
| YP_009180953.1 | NC_028449_p71 | hypothetical protein | phrog_2014 | unknown function | unknown function | 1 | 46290 | 46478 |
| YP_009180913.1 | NC_028449_p31 | hypothetical protein | phrog_1050 | gam-like host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 15747 | 16028 |
| YP_009180951.1 | NC_028449_p69 | tail fiber protein | phrog_366 | tail fiber protein | tail | 1 | 43942 | 45879 |
| YP_009180924.1 | NC_028449_p42 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 24072 | 25043 |
| YP_009180902.1 | NC_028449_p20 | hypothetical protein | phrog_6847 | unknown function | unknown function | -1 | 8807 | 9313 |
| YP_009180918.1 | NC_028449_p36 | modification methylase PstI | phrog_1600 | DNA methyltransferase | other | -1 | 19083 | 20552 |
| YP_009180939.1 | NC_028449_p57 | outer membrane lytic protein Rz | phrog_13 | Rz-like spanin | lysis | 1 | 33554 | 34018 |
| YP_009180949.1 | NC_028449_p67 | hypothetical protein | phrog_437 | virion structural protein | head and packaging | 1 | 42732 | 43295 |
| YP_009180907.1 | NC_028449_p25 | hypothetical protein | phrog_1363 | unknown function | unknown function | -1 | 11677 | 12120 |
| YP_009180955.1 | NC_028449_p73 | hypothetical protein | phrog_511 | internal virion protein | head and packaging | 1 | 46698 | 48398 |
| YP_009180954.1 | NC_028449_p72 | hypothetical protein | phrog_11089 | unknown function | unknown function | 1 | 46545 | 46658 |
| YP_009180921.1 | NC_028449_p39 | hypothetical protein | phrog_852 | unknown function | unknown function | 1 | 21690 | 21983 |
| YP_009180905.1 | NC_028449_p23 | hypothetical protein | phrog_1226 | unknown function | unknown function | -1 | 10491 | 10694 |
| YP_009180950.1 | NC_028449_p68 | hypothetical protein | phrog_399 | structural protein | head and packaging | 1 | 43295 | 43945 |
| YP_009180966.1 | NC_028449_p84 | hypothetical protein | phrog_616 | unknown function | unknown function | 1 | 55041 | 63422 |
| YP_009180960.1 | NC_028449_p78 | hypothetical protein | phrog_251 | MokW-like host killing | moron, auxiliary metabolic gene and host takeover | 1 | 51637 | 51777 |
| YP_009180903.1 | NC_028449_p21 | hypothetical protein | phrog_250 | unknown function | unknown function | -1 | 9315 | 10262 |
| YP_009180909.1 | NC_028449_p27 | hypothetical protein | phrog_204 | unknown function | unknown function | -1 | 13082 | 13429 |
| YP_009180946.1 | NC_028449_p64 | hypothetical protein | phrog_334 | major head protein | head and packaging | 1 | 40578 | 41792 |
| YP_009180941.1 | NC_028449_p59 | hypothetical protein | phrog_6954 | Rz-like spanin | lysis | 1 | 34493 | 34696 |
| YP_009180930.1 | NC_028449_p48 | shiga-like toxin II subunit A precursor | phrog_866 | Shiga toxin subunit A | moron, auxiliary metabolic gene and host takeover | 1 | 27465 | 28424 |
| YP_009180933.1 | NC_028449_p51 | hypothetical protein | phrog_9558 | unknown function | unknown function | 1 | 31125 | 31250 |
| YP_009180908.1 | NC_028449_p26 | hypothetical protein | phrog_210 | unknown function | unknown function | -1 | 12197 | 13018 |
| YP_009180894.1 | NC_028449_p12 | hypothetical protein | phrog_9924 | unknown function | unknown function | 1 | 6030 | 6227 |
| YP_009180898.1 | NC_028449_p16 | EaA protein | phrog_60 | unknown function | unknown function | -1 | 7496 | 8119 |
| YP_009180912.1 | NC_028449_p30 | recombinational DNA repair protein RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 14778 | 15728 |
| YP_009180948.1 | NC_028449_p66 | hypothetical protein | phrog_482 | unknown function | unknown function | 1 | 42287 | 42748 |
| YP_009180904.1 | NC_028449_p22 | hypothetical protein | phrog_1344 | unknown function | unknown function | -1 | 10259 | 10498 |
| YP_009180916.1 | NC_028449_p34 | hypothetical protein | phrog_995 | transcriptional regulator | transcription regulation | -1 | 16625 | 17272 |
| YP_009180915.1 | NC_028449_p33 | Kil protein | phrog_294 | Kil protein for bacterial septation inhibition | other | -1 | 16342 | 16554 |
| YP_009180914.1 | NC_028449_p32 | hypothetical protein | phrog_1635 | unknown function | unknown function | -1 | 16049 | 16330 |
| YP_009180920.1 | NC_028449_p38 | regulatory protein Cro | phrog_35 | transcriptional repressor | transcription regulation | 1 | 21456 | 21659 |
| YP_009180893.1 | NC_028449_p11 | hypothetical protein | phrog_6494 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | 1 | 5644 | 5901 |
| YP_009180963.1 | NC_028449_p81 | hypothetical protein | phrog_596 | unknown function | unknown function | 1 | 52988 | 53434 |
| YP_009180928.1 | NC_028449_p46 | antitermination protein Q | phrog_79 | anti-termination protein Q-like | transcription regulation | 1 | 26247 | 26681 |
| YP_009180883.1 | NC_028449_p1 | mobile element protein | phrog_1 | integrase | integration and excision | 1 | 220 | 1389 |
| YP_009180936.1 | NC_028449_p54 | holin | phrog_20 | holin | lysis | 1 | 31806 | 32021 |
| YP_009180926.1 | NC_028449_p44 | protein NinG | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 25497 | 26063 |
| YP_009180964.1 | NC_028449_p82 | hypothetical protein | phrog_594 | unknown function | unknown function | 1 | 53444 | 53695 |
| YP_009180958.1 | NC_028449_p76 | hypothetical protein | phrog_425 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | 1 | 49962 | 50579 |
| YP_009180923.1 | NC_028449_p41 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 22562 | 24082 |
| YP_009180917.1 | NC_028449_p35 | type II restriction enzyme BsuBI | phrog_1639 | restriction endonuclease | DNA, RNA and nucleotide metabolism | -1 | 18133 | 19086 |
| YP_009180890.1 | NC_028449_p8 | adenine DNA methyltransferase | phrog_15877 | DNA methyltransferase | other | -1 | 3763 | 4158 |
| YP_009180887.1 | NC_028449_p5 | adenine DNA methyltransferase | singleton | unknown function | unknown function | -1 | 2219 | 2416 |
| YP_009180896.1 | NC_028449_p14 | antirepressor protein | phrog_1726 | anti-repressor | transcription regulation | -1 | 6664 | 7233 |
| YP_009180889.1 | NC_028449_p7 | mobile element protein | phrog_151 | transposase | integration and excision | -1 | 3385 | 3660 |
| YP_009180962.1 | NC_028449_p80 | hypothetical protein | phrog_611 | unknown function | unknown function | 1 | 52329 | 52985 |
| YP_009180899.1 | NC_028449_p17 | hypothetical protein | phrog_2821 | unknown function | unknown function | -1 | 8123 | 8410 |
| YP_009180901.1 | NC_028449_p19 | hypothetical protein | phrog_926 | unknown function | unknown function | -1 | 8632 | 8847 |
| YP_009180886.1 | NC_028449_p4 | hypothetical protein | phrog_292 | unknown function | unknown function | -1 | 2047 | 2259 |
| YP_009180892.1 | NC_028449_p10 | hypothetical protein | phrog_1760 | anti-repressor | transcription regulation | -1 | 4642 | 5319 |
| YP_009180937.1 | NC_028449_p55 | lysin | phrog_7 | endolysin | lysis | 1 | 32026 | 32559 |
| YP_009180927.1 | NC_028449_p45 | NinH-like protein | phrog_268 | unknown function | unknown function | 1 | 26060 | 26254 |
| YP_009180888.1 | NC_028449_p6 | mobile element protein | phrog_157 | transposase | integration and excision | -1 | 2498 | 3385 |
| YP_009180957.1 | NC_028449_p75 | outer membrane protein | phrog_557 | outer membrane protein | other | 1 | 49678 | 49956 |
| YP_009180891.1 | NC_028449_p9 | hypothetical protein | phrog_1680 | unknown function | unknown function | -1 | 4155 | 4586 |
| YP_009180965.1 | NC_028449_p83 | hypothetical protein | phrog_601 | unknown function | unknown function | 1 | 53706 | 54971 |
| YP_009180929.1 | NC_028449_p47 | DNA methylase | phrog_14488 | DNA methyltransferase | other | 1 | 26930 | 27082 |
| YP_009180938.1 | NC_028449_p56 | antirepressor protein | phrog_524 | anti-repressor Ant | transcription regulation | 1 | 32834 | 33397 |
| YP_009180932.1 | NC_028449_p50 | mobile element protein | phrog_143 | unknown function | unknown function | 1 | 29191 | 31128 |
| YP_009180934.1 | NC_028449_p52 | hypothetical protein | phrog_26471 | unknown function | unknown function | 1 | 31238 | 31351 |
| YP_009180910.1 | NC_028449_p28 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 13505 | 14092 |
| YP_009180959.1 | NC_028449_p77 | attachment invasion locus protein precursor | phrog_108 | Lom outer membrane protein | other | 1 | 50670 | 51404 |
| YP_009180952.1 | NC_028449_p70 | tail fiber protein | phrog_576 | tail fiber protein | tail | 1 | 45881 | 46150 |
| YP_009180945.1 | NC_028449_p63 | hypothetical protein | phrog_479 | unknown function | unknown function | 1 | 39547 | 40554 |
| YP_009180942.1 | NC_028449_p60 | DNA packaging protein | phrog_370 | terminase small subunit | head and packaging | 1 | 34752 | 35558 |
| YP_009180944.1 | NC_028449_p62 | hypothetical protein | phrog_156 | portal protein | head and packaging | 1 | 37245 | 39389 |
| YP_009180897.1 | NC_028449_p15 | hypothetical protein | phrog_12199 | unknown function | unknown function | -1 | 7226 | 7402 |
| YP_009180884.1 | NC_028449_p2 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 1373 | 1540 |
| YP_009180961.1 | NC_028449_p79 | hypothetical protein | phrog_610 | unknown function | unknown function | 1 | 51834 | 52235 |
| YP_009180895.1 | NC_028449_p13 | HigA protein | phrog_1381 | plasmid antitoxin with HTH domain | moron, auxiliary metabolic gene and host takeover | 1 | 6316 | 6621 |
| YP_009180947.1 | NC_028449_p65 | hypothetical protein | phrog_486 | virion structural protein | head and packaging | 1 | 41848 | 42237 |
| YP_009180885.1 | NC_028449_p3 | hypothetical protein | phrog_1888 | unknown function | unknown function | -1 | 1634 | 2011 |
| YP_009180919.1 | NC_028449_p37 | repressor protein CI | phrog_4 | transcriptional repressor | transcription regulation | -1 | 20647 | 21360 |
| YP_009180940.1 | NC_028449_p58 | lipoprotein Bor | phrog_260 | Bor-like outer membrane protein | other | -1 | 34050 | 34343 |
| YP_009180931.1 | NC_028449_p49 | shiga-like toxin II subunit B precursor | phrog_851 | Shiga toxin subunit B | moron, auxiliary metabolic gene and host takeover | 1 | 28436 | 28705 |
| YP_009180911.1 | NC_028449_p29 | enzyme | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 14092 | 14781 |
| YP_009180943.1 | NC_028449_p61 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 35539 | 37245 |
| YP_009180906.1 | NC_028449_p24 | NinC | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 10691 | 11506 |