Genomic map of Mycobacterium phage Sparkdehlily (NC_028654)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028654
Definition
Mycobacterium phage Sparkdehlily, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
56275
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
111
%GC
61.23
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009187191.1 NC_028654_p35 DnaQ-like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29481 30302
YP_009187212.1 NC_028654_p56 hypothetical protein phrog_12427 unknown function unknown function 1 37837 38121
YP_009187184.1 NC_028654_p28 hypothetical protein phrog_1172 unknown function unknown function 1 25915 26049
YP_009187264.1 NC_028654_p108 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 53537 54976
YP_009187219.1 NC_028654_p63 hypothetical protein phrog_1849 unknown function unknown function 1 40056 40337
YP_009187213.1 NC_028654_p57 hypothetical protein phrog_1816 unknown function unknown function 1 38118 38306
YP_009187160.1 NC_028654_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3613 4368
YP_009187194.1 NC_028654_p38 hypothetical protein phrog_5648 unknown function unknown function -1 30783 31124
YP_009187182.1 NC_028654_p26 hypothetical protein phrog_411 unknown function unknown function 1 25466 25762
YP_009187214.1 NC_028654_p58 hypothetical protein phrog_7382 unknown function unknown function 1 38303 38560
YP_009187172.1 NC_028654_p16 minor tail protein phrog_110 minor tail protein tail 1 14836 16545
YP_009187232.1 NC_028654_p76 hypothetical protein phrog_6193 unknown function unknown function 1 44623 44745
YP_009187197.1 NC_028654_p41 hypothetical protein phrog_12593 unknown function unknown function -1 31573 31803
YP_009187209.1 NC_028654_p53 hypothetical protein phrog_5563 unknown function unknown function 1 37316 37408
YP_009187254.1 NC_028654_p98 hypothetical protein phrog_8093 unknown function unknown function 1 50342 50536
YP_009187203.1 NC_028654_p47 hypothetical protein phrog_7613 unknown function unknown function -1 34765 34911
YP_009187246.1 NC_028654_p90 hypothetical protein phrog_1901 unknown function unknown function 1 48520 48711
YP_009187168.1 NC_028654_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8561 9497
YP_009187260.1 NC_028654_p104 hypothetical protein phrog_1694 unknown function unknown function 1 52501 52707
YP_009187261.1 NC_028654_p105 hypothetical protein phrog_1186 unknown function unknown function 1 52704 53117
YP_009187230.1 NC_028654_p74 hypothetical protein phrog_2070 unknown function unknown function 1 44296 44466
YP_009187208.1 NC_028654_p52 hypothetical protein phrog_2025 unknown function unknown function 1 37104 37319
YP_009187228.1 NC_028654_p72 hypothetical protein singleton unknown function unknown function 1 43335 43628
YP_009187240.1 NC_028654_p84 hypothetical protein phrog_38055 unknown function unknown function 1 47195 47410
YP_009187210.1 NC_028654_p54 excise phrog_66 excisionase and transcriptional regulator integration and excision 1 37405 37602
YP_009187257.1 NC_028654_p101 GIY-YIG endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 50985 51524
YP_009187247.1 NC_028654_p91 hypothetical protein phrog_19398 unknown function unknown function 1 48708 48896
YP_009187171.1 NC_028654_p15 minor tail protein phrog_106 minor tail protein tail 1 13043 14752
YP_009187201.1 NC_028654_p45 integrase phrog_1 integrase integration and excision 1 32819 34120
YP_009187239.1 NC_028654_p83 hypothetical protein phrog_21293 unknown function unknown function 1 46905 47198
YP_009187181.1 NC_028654_p25 HTH DNA binding protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25120 25317
YP_009187251.1 NC_028654_p95 hypothetical protein phrog_722 unknown function unknown function 1 49514 49996
YP_009187180.1 NC_028654_p24 minor tail protein phrog_754 minor tail protein tail 1 24290 25114
YP_009187244.1 NC_028654_p88 hypothetical protein phrog_2131 unknown function unknown function 1 47836 48324
YP_009187192.1 NC_028654_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30375 30608
YP_009187165.1 NC_028654_p9 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6795 7121
YP_009187157.1 NC_028654_p1 terminase small subunit phrog_226 minor tail protein tail 1 110 565
YP_009187198.1 NC_028654_p42 hypothetical protein phrog_14625 unknown function unknown function -1 31800 31904
YP_009187229.1 NC_028654_p73 hypothetical protein phrog_2233 unknown function unknown function 1 43625 44299
YP_009187216.1 NC_028654_p60 hypothetical protein phrog_780 unknown function unknown function 1 38797 39039
YP_009187242.1 NC_028654_p86 hypothetical protein phrog_3447 unknown function unknown function 1 47559 47705
YP_009187167.1 NC_028654_p11 major tail subunit phrog_476 major tail protein tail 1 7624 8433
YP_009187267.1 NC_028654_p111 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 55806 56132
YP_009187222.1 NC_028654_p66 hypothetical protein phrog_2096 unknown function unknown function 1 41079 41579
YP_009187258.1 NC_028654_p102 hypothetical protein phrog_1467 unknown function unknown function 1 51521 52192
YP_009187241.1 NC_028654_p85 hypothetical protein phrog_15840 unknown function unknown function 1 47407 47562
YP_009187193.1 NC_028654_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30601 30693
YP_009187187.1 NC_028654_p31 lysin B phrog_102 endolysin lysis 1 27617 28618
YP_009187234.1 NC_028654_p78 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 44957 45868
YP_009187178.1 NC_028654_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23387 23641
YP_009187211.1 NC_028654_p55 hypothetical protein phrog_13720 unknown function unknown function 1 37646 37840
YP_009187196.1 NC_028654_p40 hypothetical protein phrog_5648 unknown function unknown function -1 31291 31527
YP_009187176.1 NC_028654_p20 minor tail protein phrog_2106 minor tail protein tail 1 21846 23009
YP_009187195.1 NC_028654_p39 hypothetical protein phrog_2437 unknown function unknown function -1 31124 31291
YP_009187166.1 NC_028654_p10 head-to-tail connector phrog_813 head-tail adaptor connector 1 7111 7515
YP_009187245.1 NC_028654_p89 hypothetical protein phrog_4152 unknown function unknown function 1 48395 48523
YP_009187215.1 NC_028654_p59 hypothetical protein phrog_10460 unknown function unknown function 1 38553 38804
YP_009187252.1 NC_028654_p96 hypothetical protein phrog_1091 unknown function unknown function 1 49993 50205
YP_009187227.1 NC_028654_p71 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 42690 43268
YP_009187250.1 NC_028654_p94 hypothetical protein phrog_11559 unknown function unknown function 1 49304 49513
YP_009187235.1 NC_028654_p79 hypothetical protein phrog_4296 unknown function unknown function 1 45865 46224
YP_009187221.1 NC_028654_p65 WhiB phrog_1333 unknown function unknown function 1 40681 41082
YP_009187174.1 NC_028654_p18 minor tail protein phrog_346 minor tail protein tail 1 17429 19966
YP_009187177.1 NC_028654_p21 hypothetical protein phrog_240 head protein head and packaging 1 23023 23364
YP_009187163.1 NC_028654_p7 head-to-tail connector phrog_2377 head-tail adaptor Ad1 connector 1 5893 6462
YP_009187248.1 NC_028654_p92 hypothetical protein singleton unknown function unknown function 1 48943 49101
YP_009187179.1 NC_028654_p23 minor tail protein phrog_2012 minor tail protein tail 1 23655 24293
YP_009187238.1 NC_028654_p82 hypothetical protein phrog_1943 unknown function unknown function 1 46721 46921
YP_009187207.1 NC_028654_p51 hypothetical protein phrog_5253 unknown function unknown function 1 36808 37107
YP_009187226.1 NC_028654_p70 hypothetical protein phrog_2632 unknown function unknown function 1 42431 42676
YP_009187159.1 NC_028654_p3 portal protein phrog_104 portal protein head and packaging 1 2256 3626
YP_009187161.1 NC_028654_p5 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 4451 5044
YP_009187169.1 NC_028654_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8561 9112
YP_009187205.1 NC_028654_p49 repessor phrog_3 transcriptional repressor transcription regulation 1 35653 35886
YP_009187266.1 NC_028654_p110 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 55183 55806
YP_009187158.1 NC_028654_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 588 2225
YP_009187185.1 NC_028654_p29 hypothetical protein phrog_747 unknown function unknown function 1 26116 26349
YP_009187202.1 NC_028654_p46 hypothetical protein phrog_1948 unknown function unknown function -1 34198 34650
YP_009187265.1 NC_028654_p109 hypothetical protein phrog_1693 unknown function unknown function 1 54980 55186
YP_009187237.1 NC_028654_p81 hypothetical protein phrog_2730 unknown function unknown function 1 46521 46724
YP_009187224.1 NC_028654_p68 hypothetical protein phrog_2078 unknown function unknown function 1 41941 42096
YP_009187243.1 NC_028654_p87 hypothetical protein phrog_35484 unknown function unknown function 1 47702 47839
YP_009187253.1 NC_028654_p97 hypothetical protein phrog_1545 unknown function unknown function 1 50202 50345
YP_009187190.1 NC_028654_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29261 29494
YP_009187259.1 NC_028654_p103 hypothetical protein phrog_1869 unknown function unknown function 1 52336 52500
YP_009187204.1 NC_028654_p48 HTH DNA binding domain protein phrog_2838 transcriptional repressor transcription regulation -1 34914 35654
YP_009187236.1 NC_028654_p80 hypothetical protein phrog_2080 unknown function unknown function 1 46217 46441
YP_009187223.1 NC_028654_p67 HTH DNA binding domain protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 41576 41941
YP_009187249.1 NC_028654_p93 hypothetical protein phrog_6601 unknown function unknown function 1 49128 49307
YP_009187231.1 NC_028654_p75 hypothetical protein singleton unknown function unknown function 1 44507 44623
YP_009187217.1 NC_028654_p61 hypothetical protein phrog_1797 unknown function unknown function 1 39036 39497
YP_009187220.1 NC_028654_p64 hypothetical protein phrog_658 unknown function unknown function 1 40334 40681
YP_009187183.1 NC_028654_p27 hypothetical protein phrog_932 unknown function unknown function 1 25769 25918
YP_009187162.1 NC_028654_p6 major capsid protein phrog_267 major head protein head and packaging 1 5063 5884
YP_009187206.1 NC_028654_p50 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 35945 36811
YP_009187225.1 NC_028654_p69 hypothetical protein phrog_1834 unknown function unknown function 1 42093 42434
YP_009187170.1 NC_028654_p14 tape measure phrog_1942 tail length tape measure protein tail 1 9515 13042
YP_009187175.1 NC_028654_p19 D-ala-D-ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 19984 21849
YP_009187263.1 NC_028654_p107 hypothetical protein phrog_2057 unknown function unknown function 1 53349 53510
YP_009187186.1 NC_028654_p30 lysin A phrog_700 endolysin lysis 1 26346 27617
YP_009187199.1 NC_028654_p43 HTH DNA binding protein phrog_5497 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31904 32101
YP_009187255.1 NC_028654_p99 hypothetical protein phrog_2278 unknown function unknown function 1 50589 50888
YP_009187164.1 NC_028654_p8 head-to-tail connector phrog_763 head-tail adaptor connector 1 6459 6788
YP_009187218.1 NC_028654_p62 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 39634 40032
YP_009187262.1 NC_028654_p106 hypothetical protein phrog_1385 unknown function unknown function 1 53114 53356
YP_009187189.1 NC_028654_p33 hypothetical protein phrog_404 minor tail protein tail 1 28862 29236
YP_009187188.1 NC_028654_p32 holin phrog_443 holin lysis 1 28632 28865
YP_009187173.1 NC_028654_p17 minor tail protein phrog_732 minor tail protein tail 1 16602 17432
YP_009187256.1 NC_028654_p100 hypothetical protein phrog_6194 unknown function unknown function 1 50885 50962
YP_009187200.1 NC_028654_p44 hypothetical protein phrog_7147 unknown function unknown function -1 32101 32421
YP_009187233.1 NC_028654_p77 hypothetical protein phrog_5500 unknown function unknown function 1 44742 44960