| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028654 |
Definition |
Mycobacterium phage Sparkdehlily, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
56275 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
111 |
%GC |
61.23 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009187191.1 | NC_028654_p35 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29481 | 30302 |
| YP_009187212.1 | NC_028654_p56 | hypothetical protein | phrog_12427 | unknown function | unknown function | 1 | 37837 | 38121 |
| YP_009187184.1 | NC_028654_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25915 | 26049 |
| YP_009187264.1 | NC_028654_p108 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53537 | 54976 |
| YP_009187219.1 | NC_028654_p63 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 40056 | 40337 |
| YP_009187213.1 | NC_028654_p57 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 38118 | 38306 |
| YP_009187160.1 | NC_028654_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3613 | 4368 |
| YP_009187194.1 | NC_028654_p38 | hypothetical protein | phrog_5648 | unknown function | unknown function | -1 | 30783 | 31124 |
| YP_009187182.1 | NC_028654_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25466 | 25762 |
| YP_009187214.1 | NC_028654_p58 | hypothetical protein | phrog_7382 | unknown function | unknown function | 1 | 38303 | 38560 |
| YP_009187172.1 | NC_028654_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14836 | 16545 |
| YP_009187232.1 | NC_028654_p76 | hypothetical protein | phrog_6193 | unknown function | unknown function | 1 | 44623 | 44745 |
| YP_009187197.1 | NC_028654_p41 | hypothetical protein | phrog_12593 | unknown function | unknown function | -1 | 31573 | 31803 |
| YP_009187209.1 | NC_028654_p53 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 37316 | 37408 |
| YP_009187254.1 | NC_028654_p98 | hypothetical protein | phrog_8093 | unknown function | unknown function | 1 | 50342 | 50536 |
| YP_009187203.1 | NC_028654_p47 | hypothetical protein | phrog_7613 | unknown function | unknown function | -1 | 34765 | 34911 |
| YP_009187246.1 | NC_028654_p90 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 48520 | 48711 |
| YP_009187168.1 | NC_028654_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8561 | 9497 |
| YP_009187260.1 | NC_028654_p104 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52501 | 52707 |
| YP_009187261.1 | NC_028654_p105 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 52704 | 53117 |
| YP_009187230.1 | NC_028654_p74 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 44296 | 44466 |
| YP_009187208.1 | NC_028654_p52 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 37104 | 37319 |
| YP_009187228.1 | NC_028654_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43335 | 43628 |
| YP_009187240.1 | NC_028654_p84 | hypothetical protein | phrog_38055 | unknown function | unknown function | 1 | 47195 | 47410 |
| YP_009187210.1 | NC_028654_p54 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 37405 | 37602 |
| YP_009187257.1 | NC_028654_p101 | GIY-YIG endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 50985 | 51524 |
| YP_009187247.1 | NC_028654_p91 | hypothetical protein | phrog_19398 | unknown function | unknown function | 1 | 48708 | 48896 |
| YP_009187171.1 | NC_028654_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13043 | 14752 |
| YP_009187201.1 | NC_028654_p45 | integrase | phrog_1 | integrase | integration and excision | 1 | 32819 | 34120 |
| YP_009187239.1 | NC_028654_p83 | hypothetical protein | phrog_21293 | unknown function | unknown function | 1 | 46905 | 47198 |
| YP_009187181.1 | NC_028654_p25 | HTH DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25120 | 25317 |
| YP_009187251.1 | NC_028654_p95 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 49514 | 49996 |
| YP_009187180.1 | NC_028654_p24 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 24290 | 25114 |
| YP_009187244.1 | NC_028654_p88 | hypothetical protein | phrog_2131 | unknown function | unknown function | 1 | 47836 | 48324 |
| YP_009187192.1 | NC_028654_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30375 | 30608 |
| YP_009187165.1 | NC_028654_p9 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6795 | 7121 |
| YP_009187157.1 | NC_028654_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 110 | 565 |
| YP_009187198.1 | NC_028654_p42 | hypothetical protein | phrog_14625 | unknown function | unknown function | -1 | 31800 | 31904 |
| YP_009187229.1 | NC_028654_p73 | hypothetical protein | phrog_2233 | unknown function | unknown function | 1 | 43625 | 44299 |
| YP_009187216.1 | NC_028654_p60 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 38797 | 39039 |
| YP_009187242.1 | NC_028654_p86 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 47559 | 47705 |
| YP_009187167.1 | NC_028654_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7624 | 8433 |
| YP_009187267.1 | NC_028654_p111 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 55806 | 56132 |
| YP_009187222.1 | NC_028654_p66 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 41079 | 41579 |
| YP_009187258.1 | NC_028654_p102 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51521 | 52192 |
| YP_009187241.1 | NC_028654_p85 | hypothetical protein | phrog_15840 | unknown function | unknown function | 1 | 47407 | 47562 |
| YP_009187193.1 | NC_028654_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30601 | 30693 |
| YP_009187187.1 | NC_028654_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27617 | 28618 |
| YP_009187234.1 | NC_028654_p78 | hypothetical protein | phrog_2149 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 44957 | 45868 |
| YP_009187178.1 | NC_028654_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23387 | 23641 |
| YP_009187211.1 | NC_028654_p55 | hypothetical protein | phrog_13720 | unknown function | unknown function | 1 | 37646 | 37840 |
| YP_009187196.1 | NC_028654_p40 | hypothetical protein | phrog_5648 | unknown function | unknown function | -1 | 31291 | 31527 |
| YP_009187176.1 | NC_028654_p20 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 21846 | 23009 |
| YP_009187195.1 | NC_028654_p39 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31124 | 31291 |
| YP_009187166.1 | NC_028654_p10 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 7111 | 7515 |
| YP_009187245.1 | NC_028654_p89 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 48395 | 48523 |
| YP_009187215.1 | NC_028654_p59 | hypothetical protein | phrog_10460 | unknown function | unknown function | 1 | 38553 | 38804 |
| YP_009187252.1 | NC_028654_p96 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 49993 | 50205 |
| YP_009187227.1 | NC_028654_p71 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 42690 | 43268 |
| YP_009187250.1 | NC_028654_p94 | hypothetical protein | phrog_11559 | unknown function | unknown function | 1 | 49304 | 49513 |
| YP_009187235.1 | NC_028654_p79 | hypothetical protein | phrog_4296 | unknown function | unknown function | 1 | 45865 | 46224 |
| YP_009187221.1 | NC_028654_p65 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 40681 | 41082 |
| YP_009187174.1 | NC_028654_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17429 | 19966 |
| YP_009187177.1 | NC_028654_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23023 | 23364 |
| YP_009187163.1 | NC_028654_p7 | head-to-tail connector | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5893 | 6462 |
| YP_009187248.1 | NC_028654_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48943 | 49101 |
| YP_009187179.1 | NC_028654_p23 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 23655 | 24293 |
| YP_009187238.1 | NC_028654_p82 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 46721 | 46921 |
| YP_009187207.1 | NC_028654_p51 | hypothetical protein | phrog_5253 | unknown function | unknown function | 1 | 36808 | 37107 |
| YP_009187226.1 | NC_028654_p70 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 42431 | 42676 |
| YP_009187159.1 | NC_028654_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2256 | 3626 |
| YP_009187161.1 | NC_028654_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4451 | 5044 |
| YP_009187169.1 | NC_028654_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8561 | 9112 |
| YP_009187205.1 | NC_028654_p49 | repessor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 35653 | 35886 |
| YP_009187266.1 | NC_028654_p110 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55183 | 55806 |
| YP_009187158.1 | NC_028654_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 588 | 2225 |
| YP_009187185.1 | NC_028654_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26116 | 26349 |
| YP_009187202.1 | NC_028654_p46 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34198 | 34650 |
| YP_009187265.1 | NC_028654_p109 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 54980 | 55186 |
| YP_009187237.1 | NC_028654_p81 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 46521 | 46724 |
| YP_009187224.1 | NC_028654_p68 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 41941 | 42096 |
| YP_009187243.1 | NC_028654_p87 | hypothetical protein | phrog_35484 | unknown function | unknown function | 1 | 47702 | 47839 |
| YP_009187253.1 | NC_028654_p97 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 50202 | 50345 |
| YP_009187190.1 | NC_028654_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29261 | 29494 |
| YP_009187259.1 | NC_028654_p103 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52336 | 52500 |
| YP_009187204.1 | NC_028654_p48 | HTH DNA binding domain protein | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 34914 | 35654 |
| YP_009187236.1 | NC_028654_p80 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46217 | 46441 |
| YP_009187223.1 | NC_028654_p67 | HTH DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41576 | 41941 |
| YP_009187249.1 | NC_028654_p93 | hypothetical protein | phrog_6601 | unknown function | unknown function | 1 | 49128 | 49307 |
| YP_009187231.1 | NC_028654_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44507 | 44623 |
| YP_009187217.1 | NC_028654_p61 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 39036 | 39497 |
| YP_009187220.1 | NC_028654_p64 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40334 | 40681 |
| YP_009187183.1 | NC_028654_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25769 | 25918 |
| YP_009187162.1 | NC_028654_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5063 | 5884 |
| YP_009187206.1 | NC_028654_p50 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35945 | 36811 |
| YP_009187225.1 | NC_028654_p69 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 42093 | 42434 |
| YP_009187170.1 | NC_028654_p14 | tape measure | phrog_1942 | tail length tape measure protein | tail | 1 | 9515 | 13042 |
| YP_009187175.1 | NC_028654_p19 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19984 | 21849 |
| YP_009187263.1 | NC_028654_p107 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 53349 | 53510 |
| YP_009187186.1 | NC_028654_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26346 | 27617 |
| YP_009187199.1 | NC_028654_p43 | HTH DNA binding protein | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31904 | 32101 |
| YP_009187255.1 | NC_028654_p99 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 50589 | 50888 |
| YP_009187164.1 | NC_028654_p8 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6459 | 6788 |
| YP_009187218.1 | NC_028654_p62 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 39634 | 40032 |
| YP_009187262.1 | NC_028654_p106 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53114 | 53356 |
| YP_009187189.1 | NC_028654_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28862 | 29236 |
| YP_009187188.1 | NC_028654_p32 | holin | phrog_443 | holin | lysis | 1 | 28632 | 28865 |
| YP_009187173.1 | NC_028654_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16602 | 17432 |
| YP_009187256.1 | NC_028654_p100 | hypothetical protein | phrog_6194 | unknown function | unknown function | 1 | 50885 | 50962 |
| YP_009187200.1 | NC_028654_p44 | hypothetical protein | phrog_7147 | unknown function | unknown function | -1 | 32101 | 32421 |
| YP_009187233.1 | NC_028654_p77 | hypothetical protein | phrog_5500 | unknown function | unknown function | 1 | 44742 | 44960 |