| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028655 |
Definition |
Yersinia phage vB_YenP_AP10, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Apdecimavirus; Yersinia virus AP10. |
DB of origin |
REFSEQ |
Length |
39235 |
Host Name |
Yersinia enterocolitica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
47 |
%GC |
51.75 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009187278.1 | NC_028655_p11 | hypothetical protein | phrog_4383 | unknown function | unknown function | 1 | 7016 | 7192 |
| YP_009187287.1 | NC_028655_p20 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 12856 | 13068 |
| YP_009187285.1 | NC_028655_p18 | endolysin | phrog_822 | amidase | lysis | 1 | 10502 | 10957 |
| YP_009187288.1 | NC_028655_p21 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13080 | 13388 |
| YP_009187311.1 | NC_028655_p44 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 35757 | 36020 |
| YP_009187314.1 | NC_028655_p47 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 38669 | 38818 |
| YP_009187303.1 | NC_028655_p36 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23225 | 23815 |
| YP_009187272.1 | NC_028655_p5 | hypothetical protein | phrog_6500 | unknown function | unknown function | 1 | 1847 | 2047 |
| YP_009187275.1 | NC_028655_p8 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2392 | 3567 |
| YP_009187286.1 | NC_028655_p19 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11224 | 12750 |
| YP_009187304.1 | NC_028655_p37 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23835 | 26213 |
| YP_009187268.1 | NC_028655_p1 | Ocr | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 758 | 1123 |
| YP_009187307.1 | NC_028655_p40 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27310 | 29580 |
| YP_009187297.1 | NC_028655_p30 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18218 | 18490 |
| YP_009187291.1 | NC_028655_p24 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16019 | 16312 |
| YP_009187300.1 | NC_028655_p33 | head to tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 19225 | 20844 |
| YP_009187299.1 | NC_028655_p32 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18876 | 19205 |
| YP_009187283.1 | NC_028655_p16 | ssDNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9337 | 10032 |
| YP_009187301.1 | NC_028655_p34 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 20908 | 21825 |
| YP_009187280.1 | NC_028655_p13 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8415 | 8672 |
| YP_009187279.1 | NC_028655_p12 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7195 | 8247 |
| YP_009187298.1 | NC_028655_p31 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18487 | 18873 |
| YP_009187269.1 | NC_028655_p2 | hypothetical protein | phrog_7202 | unknown function | unknown function | 1 | 1123 | 1275 |
| YP_009187282.1 | NC_028655_p15 | host RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9062 | 9247 |
| YP_009187270.1 | NC_028655_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1471 | 1626 |
| YP_009187302.1 | NC_028655_p35 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21990 | 23030 |
| YP_009187294.1 | NC_028655_p27 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16870 | 17772 |
| YP_009187309.1 | NC_028655_p42 | tail fiber protein | phrog_9502 | tail fiber protein | tail | 1 | 33635 | 35548 |
| YP_009187276.1 | NC_028655_p9 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3639 | 6326 |
| YP_009187274.1 | NC_028655_p7 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 2173 | 2370 |
| YP_009187290.1 | NC_028655_p23 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13879 | 15999 |
| YP_009187310.1 | NC_028655_p43 | holin | phrog_920 | holin | lysis | 1 | 35548 | 35751 |
| YP_009187296.1 | NC_028655_p29 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17969 | 18214 |
| YP_009187277.1 | NC_028655_p10 | hypothetical protein | phrog_8103 | unknown function | unknown function | 1 | 6409 | 6927 |
| YP_009187312.1 | NC_028655_p45 | lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 36119 | 36562 |
| YP_009187313.1 | NC_028655_p46 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 36646 | 38403 |
| YP_009187306.1 | NC_028655_p39 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 26696 | 27298 |
| YP_009187292.1 | NC_028655_p25 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 16312 | 16521 |
| YP_009187295.1 | NC_028655_p28 | hypothetical protein | phrog_5008 | unknown function | unknown function | 1 | 17760 | 17873 |
| YP_009187273.1 | NC_028655_p6 | hypothetical protein | phrog_33188 | unknown function | unknown function | 1 | 2047 | 2169 |
| YP_009187293.1 | NC_028655_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16518 | 16865 |
| YP_009187284.1 | NC_028655_p17 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10046 | 10501 |
| YP_009187305.1 | NC_028655_p38 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26286 | 26693 |
| YP_009187308.1 | NC_028655_p41 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29593 | 33570 |
| YP_009187281.1 | NC_028655_p14 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 8672 | 8974 |
| YP_009187289.1 | NC_028655_p22 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 13462 | 13863 |
| YP_009187271.1 | NC_028655_p4 | hypothetical protein | phrog_13225 | unknown function | unknown function | 1 | 1698 | 1847 |