Genomic map of Yersinia phage vB_YenP_AP10 (NC_028655)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028655
Definition
Yersinia phage vB_YenP_AP10, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Apdecimavirus; Yersinia virus AP10.
DB of origin
REFSEQ
Length
39235
Host Name
Yersinia enterocolitica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
51.75
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009187278.1 NC_028655_p11 hypothetical protein phrog_4383 unknown function unknown function 1 7016 7192
YP_009187287.1 NC_028655_p20 hypothetical protein phrog_1950 unknown function unknown function 1 12856 13068
YP_009187285.1 NC_028655_p18 endolysin phrog_822 amidase lysis 1 10502 10957
YP_009187288.1 NC_028655_p21 hypothetical protein phrog_2254 unknown function unknown function 1 13080 13388
YP_009187311.1 NC_028655_p44 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 35757 36020
YP_009187314.1 NC_028655_p47 hypothetical protein phrog_2193 unknown function unknown function 1 38669 38818
YP_009187303.1 NC_028655_p36 tail tubular protein A phrog_446 tail protein tail 1 23225 23815
YP_009187272.1 NC_028655_p5 hypothetical protein phrog_6500 unknown function unknown function 1 1847 2047
YP_009187275.1 NC_028655_p8 protein kinase phrog_2828 serine-threonine kinase other 1 2392 3567
YP_009187286.1 NC_028655_p19 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11224 12750
YP_009187304.1 NC_028655_p37 tail tubular protein B phrog_457 tail protein tail 1 23835 26213
YP_009187268.1 NC_028655_p1 Ocr phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 758 1123
YP_009187307.1 NC_028655_p40 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27310 29580
YP_009187297.1 NC_028655_p30 hypothetical protein phrog_1391 unknown function unknown function 1 18218 18490
YP_009187291.1 NC_028655_p24 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16019 16312
YP_009187300.1 NC_028655_p33 head to tail joining protein phrog_449 head-tail adaptor connector 1 19225 20844
YP_009187299.1 NC_028655_p32 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18876 19205
YP_009187283.1 NC_028655_p16 ssDNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9337 10032
YP_009187301.1 NC_028655_p34 capsid assembly protein phrog_1052 head assembly head and packaging 1 20908 21825
YP_009187280.1 NC_028655_p13 hypothetical protein phrog_1777 unknown function unknown function 1 8415 8672
YP_009187279.1 NC_028655_p12 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7195 8247
YP_009187298.1 NC_028655_p31 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18487 18873
YP_009187269.1 NC_028655_p2 hypothetical protein phrog_7202 unknown function unknown function 1 1123 1275
YP_009187282.1 NC_028655_p15 host RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9062 9247
YP_009187270.1 NC_028655_p3 hypothetical protein singleton unknown function unknown function 1 1471 1626
YP_009187302.1 NC_028655_p35 major capsid protein phrog_267 major head protein head and packaging 1 21990 23030
YP_009187294.1 NC_028655_p27 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16870 17772
YP_009187309.1 NC_028655_p42 tail fiber protein phrog_9502 tail fiber protein tail 1 33635 35548
YP_009187276.1 NC_028655_p9 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3639 6326
YP_009187274.1 NC_028655_p7 hypothetical protein phrog_2385 unknown function unknown function 1 2173 2370
YP_009187290.1 NC_028655_p23 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13879 15999
YP_009187310.1 NC_028655_p43 holin phrog_920 holin lysis 1 35548 35751
YP_009187296.1 NC_028655_p29 hypothetical protein phrog_1447 unknown function unknown function 1 17969 18214
YP_009187277.1 NC_028655_p10 hypothetical protein phrog_8103 unknown function unknown function 1 6409 6927
YP_009187312.1 NC_028655_p45 lysis protein phrog_1327 Rz-like spanin lysis 1 36119 36562
YP_009187313.1 NC_028655_p46 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 36646 38403
YP_009187306.1 NC_028655_p39 internal virion protein B phrog_805 internal virion protein head and packaging 1 26696 27298
YP_009187292.1 NC_028655_p25 hypothetical protein phrog_1334 unknown function unknown function 1 16312 16521
YP_009187295.1 NC_028655_p28 hypothetical protein phrog_5008 unknown function unknown function 1 17760 17873
YP_009187273.1 NC_028655_p6 hypothetical protein phrog_33188 unknown function unknown function 1 2047 2169
YP_009187293.1 NC_028655_p26 hypothetical protein singleton unknown function unknown function 1 16518 16865
YP_009187284.1 NC_028655_p17 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10046 10501
YP_009187305.1 NC_028655_p38 internal virion protein A phrog_308 internal virion protein head and packaging 1 26286 26693
YP_009187308.1 NC_028655_p41 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29593 33570
YP_009187281.1 NC_028655_p14 hypothetical protein phrog_2585 nucleotide kinase other 1 8672 8974
YP_009187289.1 NC_028655_p22 hypothetical protein phrog_4023 unknown function unknown function 1 13462 13863
YP_009187271.1 NC_028655_p4 hypothetical protein phrog_13225 unknown function unknown function 1 1698 1847