| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028657 |
Definition |
Pseudomonas phage YMC11/02/R656, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
60919 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
113 |
%GC |
58.73 |
Number of singletons |
20 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009187443.1 | NC_028657_p46 | hypothetical protein | phrog_2712 | tail fiber protein | tail | -1 | 19810 | 20601 |
| YP_009187425.1 | NC_028657_p28 | hypothetical protein | phrog_11137 | unknown function | unknown function | 1 | 11742 | 11909 |
| YP_009187462.1 | NC_028657_p65 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | -1 | 33962 | 34549 |
| YP_009187420.1 | NC_028657_p23 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9928 | 10443 |
| YP_009187401.1 | NC_028657_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1091 | 1288 |
| YP_009187489.1 | NC_028657_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49583 | 49735 |
| YP_009187456.1 | NC_028657_p59 | hypothetical protein | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 28666 | 28869 |
| YP_009187445.1 | NC_028657_p48 | hypothetical protein | phrog_31 | central tail fiber J | tail | -1 | 21581 | 25138 |
| YP_009187458.1 | NC_028657_p61 | hypothetical protein | phrog_30 | minor tail protein | tail | -1 | 29036 | 29785 |
| YP_009187464.1 | NC_028657_p67 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | -1 | 35041 | 35358 |
| YP_009187454.1 | NC_028657_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28037 | 28153 |
| YP_009187494.1 | NC_028657_p97 | hypothetical protein | phrog_2529 | unknown function | unknown function | -1 | 51555 | 51818 |
| YP_009187402.1 | NC_028657_p5 | hypothetical protein | phrog_924 | unknown function | unknown function | 1 | 1604 | 1867 |
| YP_009187409.1 | NC_028657_p12 | hypothetical protein | phrog_11457 | unknown function | unknown function | 1 | 4108 | 4293 |
| YP_009187417.1 | NC_028657_p20 | hypothetical protein | phrog_10492 | unknown function | unknown function | 1 | 8366 | 8551 |
| YP_009187497.1 | NC_028657_p100 | hypothetical protein | phrog_4887 | unknown function | unknown function | -1 | 52426 | 52710 |
| YP_009187406.1 | NC_028657_p9 | hypothetical protein | phrog_3483 | unknown function | unknown function | 1 | 3109 | 3621 |
| YP_009187506.1 | NC_028657_p109 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57868 | 58662 |
| YP_009187468.1 | NC_028657_p71 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 37491 | 38165 |
| YP_009187412.1 | NC_028657_p15 | hypothetical protein | phrog_1376 | unknown function | unknown function | 1 | 4848 | 5912 |
| YP_009187508.1 | NC_028657_p111 | hypothetical protein | phrog_22162 | unknown function | unknown function | 1 | 59384 | 59926 |
| YP_009187421.1 | NC_028657_p24 | hypothetical protein | phrog_3592 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 10440 | 10952 |
| YP_009187449.1 | NC_028657_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26370 | 26570 |
| YP_009187485.1 | NC_028657_p88 | hypothetical protein | phrog_198 | holin | lysis | -1 | 48086 | 48454 |
| YP_009187451.1 | NC_028657_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27210 | 27461 |
| YP_009187429.1 | NC_028657_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12732 | 13028 |
| YP_009187477.1 | NC_028657_p80 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | -1 | 44140 | 45459 |
| YP_009187509.1 | NC_028657_p112 | hypothetical protein | phrog_1651 | unknown function | unknown function | 1 | 59935 | 60375 |
| YP_009187440.1 | NC_028657_p43 | hypothetical protein | phrog_245 | anti-repressor Ant | transcription regulation | 1 | 18278 | 19138 |
| YP_009187496.1 | NC_028657_p99 | DksA-like zinc finger domain containing protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 52224 | 52433 |
| YP_009187507.1 | NC_028657_p110 | hypothetical protein | phrog_5176 | unknown function | unknown function | 1 | 58649 | 59020 |
| YP_009187486.1 | NC_028657_p89 | hypothetical protein | phrog_18921 | unknown function | unknown function | 1 | 48597 | 48896 |
| YP_009187428.1 | NC_028657_p31 | hypothetical protein | phrog_21008 | unknown function | unknown function | 1 | 12475 | 12723 |
| YP_009187469.1 | NC_028657_p72 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 38168 | 38518 |
| YP_009187411.1 | NC_028657_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4576 | 4806 |
| YP_009187502.1 | NC_028657_p105 | hypothetical protein | phrog_6111 | unknown function | unknown function | -1 | 55832 | 56026 |
| YP_009187448.1 | NC_028657_p51 | tail assembly protein | phrog_32 | tail assembly protein | tail | -1 | 25715 | 26299 |
| YP_009187433.1 | NC_028657_p36 | hypothetical protein | phrog_3944 | unknown function | unknown function | -1 | 15145 | 15408 |
| YP_009187466.1 | NC_028657_p69 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 36078 | 36491 |
| YP_009187430.1 | NC_028657_p33 | hypothetical protein | phrog_368 | unknown function | unknown function | 1 | 13025 | 13483 |
| YP_009187501.1 | NC_028657_p104 | hypothetical protein | phrog_5810 | replication initiation protein | DNA, RNA and nucleotide metabolism | -1 | 54846 | 55835 |
| YP_009187472.1 | NC_028657_p75 | hypothetical protein | phrog_10405 | virion structural protein | head and packaging | -1 | 39171 | 39635 |
| YP_009187482.1 | NC_028657_p85 | hypothetical protein | phrog_35763 | unknown function | unknown function | -1 | 47379 | 47576 |
| YP_009187413.1 | NC_028657_p16 | bet | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5920 | 6666 |
| YP_009187439.1 | NC_028657_p42 | hypothetical protein | phrog_2320 | unknown function | unknown function | -1 | 17568 | 17963 |
| YP_009187400.1 | NC_028657_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 852 | 1037 |
| YP_009187436.1 | NC_028657_p39 | hypothetical protein | phrog_3774 | unknown function | unknown function | -1 | 16439 | 16807 |
| YP_009187479.1 | NC_028657_p82 | transposase | phrog_513 | transposase | integration and excision | -1 | 45943 | 46539 |
| YP_009187426.1 | NC_028657_p29 | hypothetical protein | phrog_343 | unknown function | unknown function | 1 | 11912 | 12220 |
| YP_009187487.1 | NC_028657_p90 | hypothetical protein | phrog_17123 | unknown function | unknown function | -1 | 48897 | 49100 |
| YP_009187461.1 | NC_028657_p64 | hypothetical protein | phrog_24 | tail length tape measure protein | tail | -1 | 30878 | 33898 |
| YP_009187463.1 | NC_028657_p66 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | -1 | 34733 | 34957 |
| YP_009187442.1 | NC_028657_p45 | hypothetical protein | phrog_2398 | unknown function | unknown function | -1 | 19508 | 19810 |
| YP_009187478.1 | NC_028657_p81 | hypothetical protein | phrog_546 | unknown function | unknown function | -1 | 45434 | 45910 |
| YP_009187418.1 | NC_028657_p21 | hypothetical protein | phrog_17089 | unknown function | unknown function | 1 | 8548 | 8772 |
| YP_009187435.1 | NC_028657_p38 | hypothetical protein | phrog_12841 | unknown function | unknown function | 1 | 15858 | 16175 |
| YP_009187403.1 | NC_028657_p6 | hypothetical protein | phrog_1273 | unknown function | unknown function | 1 | 1883 | 2170 |
| YP_009187467.1 | NC_028657_p70 | hypothetical protein | phrog_1136 | unknown function | unknown function | -1 | 36551 | 37273 |
| YP_009187455.1 | NC_028657_p58 | hypothetical protein | phrog_6632 | unknown function | unknown function | -1 | 28180 | 28326 |
| YP_009187450.1 | NC_028657_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26698 | 26931 |
| YP_009187484.1 | NC_028657_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47809 | 47937 |
| YP_009187500.1 | NC_028657_p103 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 53509 | 54849 |
| YP_009187505.1 | NC_028657_p108 | hypothetical protein | phrog_4 | transcriptional repressor | transcription regulation | 1 | 56906 | 57739 |
| YP_009187491.1 | NC_028657_p94 | hypothetical protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | -1 | 50529 | 51173 |
| YP_009187475.1 | NC_028657_p78 | hypothetical protein | phrog_241 | head morphogenesis | head and packaging | -1 | 41671 | 42750 |
| YP_009187444.1 | NC_028657_p47 | hypothetical protein | phrog_3370 | unknown function | unknown function | -1 | 20614 | 21300 |
| YP_009187424.1 | NC_028657_p27 | hypothetical protein | phrog_5315 | unknown function | unknown function | 1 | 11611 | 11757 |
| YP_009187499.1 | NC_028657_p102 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52823 | 53509 |
| YP_009187407.1 | NC_028657_p10 | hypothetical protein | phrog_13871 | unknown function | unknown function | 1 | 3618 | 4001 |
| YP_009187483.1 | NC_028657_p86 | hypothetical protein | phrog_1046 | unknown function | unknown function | -1 | 47576 | 47809 |
| YP_009187398.1 | NC_028657_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 410 | 655 |
| YP_009187470.1 | NC_028657_p73 | hypothetical protein | phrog_493 | head-tail adaptor Ad1 | connector | -1 | 38522 | 38905 |
| YP_009187431.1 | NC_028657_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13543 | 13674 |
| YP_009187465.1 | NC_028657_p68 | hypothetical protein | phrog_584 | major tail protein | tail | -1 | 35368 | 36024 |
| YP_009187504.1 | NC_028657_p107 | hypothetical protein | phrog_409 | transcriptional regulator | transcription regulation | -1 | 56637 | 56816 |
| YP_009187432.1 | NC_028657_p35 | hypothetical protein | phrog_1 | integrase | integration and excision | 1 | 13840 | 14949 |
| YP_009187405.1 | NC_028657_p8 | hypothetical protein | phrog_4801 | unknown function | unknown function | 1 | 2693 | 3112 |
| YP_009187419.1 | NC_028657_p22 | hypothetical protein | phrog_3956 | unknown function | unknown function | 1 | 8769 | 9935 |
| YP_009187498.1 | NC_028657_p101 | hypothetical protein | phrog_8532 | unknown function | unknown function | -1 | 52710 | 52826 |
| YP_009187415.1 | NC_028657_p18 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 7273 | 7722 |
| YP_009187446.1 | NC_028657_p49 | hypothetical protein | phrog_17867 | unknown function | unknown function | 1 | 25223 | 25465 |
| YP_009187492.1 | NC_028657_p95 | hypothetical protein | phrog_26412 | unknown function | unknown function | -1 | 51170 | 51403 |
| YP_009187476.1 | NC_028657_p79 | hypothetical protein | phrog_145 | portal protein | head and packaging | -1 | 42747 | 44135 |
| YP_009187438.1 | NC_028657_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17224 | 17412 |
| YP_009187503.1 | NC_028657_p106 | hypothetical protein | phrog_163 | CII-like transcriptional activator | transcription regulation | -1 | 56029 | 56601 |
| YP_009187441.1 | NC_028657_p44 | hypothetical protein | phrog_2687 | unknown function | unknown function | -1 | 19272 | 19511 |
| YP_009187434.1 | NC_028657_p37 | hypothetical protein | phrog_3580 | unknown function | unknown function | -1 | 15444 | 15719 |
| YP_009187488.1 | NC_028657_p91 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49416 | 49580 |
| YP_009187510.1 | NC_028657_p113 | hypothetical protein | phrog_2707 | unknown function | unknown function | -1 | 60434 | 60760 |
| YP_009187399.1 | NC_028657_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 652 | 810 |
| YP_009187414.1 | NC_028657_p17 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 6650 | 7276 |
| YP_009187452.1 | NC_028657_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27597 | 27728 |
| YP_009187404.1 | NC_028657_p7 | hypothetical protein | phrog_924 | unknown function | unknown function | 1 | 2204 | 2398 |
| YP_009187427.1 | NC_028657_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12217 | 12444 |
| YP_009187474.1 | NC_028657_p77 | hypothetical protein | phrog_784 | unknown function | unknown function | -1 | 40769 | 41554 |
| YP_009187460.1 | NC_028657_p63 | minor tail protein M | phrog_14 | minor tail protein | tail | -1 | 30534 | 30872 |
| YP_009187453.1 | NC_028657_p56 | hypothetical protein | phrog_38193 | unknown function | unknown function | -1 | 27712 | 27960 |
| YP_009187473.1 | NC_028657_p76 | hypothetical protein | phrog_247 | major head protein | head and packaging | -1 | 39684 | 40664 |
| YP_009187495.1 | NC_028657_p98 | NinB | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | -1 | 51815 | 52231 |
| YP_009187493.1 | NC_028657_p96 | hypothetical protein | phrog_21511 | unknown function | unknown function | -1 | 51400 | 51558 |
| YP_009187471.1 | NC_028657_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38902 | 39165 |
| YP_009187422.1 | NC_028657_p25 | hypothetical protein | phrog_4568 | unknown function | unknown function | 1 | 10942 | 11142 |
| YP_009187416.1 | NC_028657_p19 | hypothetical protein | phrog_12813 | unknown function | unknown function | 1 | 7786 | 8385 |
| YP_009187457.1 | NC_028657_p60 | hypothetical protein | phrog_29001 | unknown function | unknown function | -1 | 28823 | 28999 |
| YP_009187480.1 | NC_028657_p83 | hypothetical protein | phrog_5901 | unknown function | unknown function | 1 | 46624 | 46830 |
| YP_009187423.1 | NC_028657_p26 | hypothetical protein | phrog_10472 | unknown function | unknown function | 1 | 11135 | 11434 |
| YP_009187481.1 | NC_028657_p84 | hypothetical protein | phrog_35260 | unknown function | unknown function | 1 | 46885 | 47271 |
| YP_009187410.1 | NC_028657_p13 | hypothetical protein | phrog_5864 | unknown function | unknown function | 1 | 4290 | 4427 |
| YP_009187459.1 | NC_028657_p62 | hypothetical protein | phrog_18 | minor tail protein | tail | -1 | 29788 | 30537 |
| YP_009187408.1 | NC_028657_p11 | hypothetical protein | phrog_21577 | unknown function | unknown function | 1 | 3998 | 4111 |
| YP_009187490.1 | NC_028657_p93 | hypothetical protein | phrog_3373 | unknown function | unknown function | -1 | 49846 | 50532 |
| YP_009187437.1 | NC_028657_p40 | endolysin | phrog_7 | endolysin | lysis | -1 | 16804 | 17238 |
| YP_009187447.1 | NC_028657_p50 | hypothetical protein | phrog_27580 | unknown function | unknown function | -1 | 25462 | 25677 |