Genomic map of Pseudomonas phage YMC11/02/R656 (NC_028657)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028657
Definition
Pseudomonas phage YMC11/02/R656, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
60919
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
113
%GC
58.73
Number of singletons
20
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009187443.1 NC_028657_p46 hypothetical protein phrog_2712 tail fiber protein tail -1 19810 20601
YP_009187425.1 NC_028657_p28 hypothetical protein phrog_11137 unknown function unknown function 1 11742 11909
YP_009187462.1 NC_028657_p65 hypothetical protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover -1 33962 34549
YP_009187420.1 NC_028657_p23 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9928 10443
YP_009187401.1 NC_028657_p4 hypothetical protein singleton unknown function unknown function 1 1091 1288
YP_009187489.1 NC_028657_p92 hypothetical protein singleton unknown function unknown function 1 49583 49735
YP_009187456.1 NC_028657_p59 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 28666 28869
YP_009187445.1 NC_028657_p48 hypothetical protein phrog_31 central tail fiber J tail -1 21581 25138
YP_009187458.1 NC_028657_p61 hypothetical protein phrog_30 minor tail protein tail -1 29036 29785
YP_009187464.1 NC_028657_p67 hypothetical protein phrog_569 tail length tape measure protein tail -1 35041 35358
YP_009187454.1 NC_028657_p57 hypothetical protein singleton unknown function unknown function -1 28037 28153
YP_009187494.1 NC_028657_p97 hypothetical protein phrog_2529 unknown function unknown function -1 51555 51818
YP_009187402.1 NC_028657_p5 hypothetical protein phrog_924 unknown function unknown function 1 1604 1867
YP_009187409.1 NC_028657_p12 hypothetical protein phrog_11457 unknown function unknown function 1 4108 4293
YP_009187417.1 NC_028657_p20 hypothetical protein phrog_10492 unknown function unknown function 1 8366 8551
YP_009187497.1 NC_028657_p100 hypothetical protein phrog_4887 unknown function unknown function -1 52426 52710
YP_009187406.1 NC_028657_p9 hypothetical protein phrog_3483 unknown function unknown function 1 3109 3621
YP_009187506.1 NC_028657_p109 hypothetical protein singleton unknown function unknown function 1 57868 58662
YP_009187468.1 NC_028657_p71 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 37491 38165
YP_009187412.1 NC_028657_p15 hypothetical protein phrog_1376 unknown function unknown function 1 4848 5912
YP_009187508.1 NC_028657_p111 hypothetical protein phrog_22162 unknown function unknown function 1 59384 59926
YP_009187421.1 NC_028657_p24 hypothetical protein phrog_3592 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 10440 10952
YP_009187449.1 NC_028657_p52 hypothetical protein singleton unknown function unknown function -1 26370 26570
YP_009187485.1 NC_028657_p88 hypothetical protein phrog_198 holin lysis -1 48086 48454
YP_009187451.1 NC_028657_p54 hypothetical protein singleton unknown function unknown function 1 27210 27461
YP_009187429.1 NC_028657_p32 hypothetical protein singleton unknown function unknown function 1 12732 13028
YP_009187477.1 NC_028657_p80 hypothetical protein phrog_2 terminase large subunit head and packaging -1 44140 45459
YP_009187509.1 NC_028657_p112 hypothetical protein phrog_1651 unknown function unknown function 1 59935 60375
YP_009187440.1 NC_028657_p43 hypothetical protein phrog_245 anti-repressor Ant transcription regulation 1 18278 19138
YP_009187496.1 NC_028657_p99 DksA-like zinc finger domain containing protein phrog_54 DksA-like zinc-finger protein other -1 52224 52433
YP_009187507.1 NC_028657_p110 hypothetical protein phrog_5176 unknown function unknown function 1 58649 59020
YP_009187486.1 NC_028657_p89 hypothetical protein phrog_18921 unknown function unknown function 1 48597 48896
YP_009187428.1 NC_028657_p31 hypothetical protein phrog_21008 unknown function unknown function 1 12475 12723
YP_009187469.1 NC_028657_p72 hypothetical protein phrog_161 head closure Hc1 connector -1 38168 38518
YP_009187411.1 NC_028657_p14 hypothetical protein singleton unknown function unknown function 1 4576 4806
YP_009187502.1 NC_028657_p105 hypothetical protein phrog_6111 unknown function unknown function -1 55832 56026
YP_009187448.1 NC_028657_p51 tail assembly protein phrog_32 tail assembly protein tail -1 25715 26299
YP_009187433.1 NC_028657_p36 hypothetical protein phrog_3944 unknown function unknown function -1 15145 15408
YP_009187466.1 NC_028657_p69 hypothetical protein phrog_179 tail terminator connector -1 36078 36491
YP_009187430.1 NC_028657_p33 hypothetical protein phrog_368 unknown function unknown function 1 13025 13483
YP_009187501.1 NC_028657_p104 hypothetical protein phrog_5810 replication initiation protein DNA, RNA and nucleotide metabolism -1 54846 55835
YP_009187472.1 NC_028657_p75 hypothetical protein phrog_10405 virion structural protein head and packaging -1 39171 39635
YP_009187482.1 NC_028657_p85 hypothetical protein phrog_35763 unknown function unknown function -1 47379 47576
YP_009187413.1 NC_028657_p16 bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5920 6666
YP_009187439.1 NC_028657_p42 hypothetical protein phrog_2320 unknown function unknown function -1 17568 17963
YP_009187400.1 NC_028657_p3 hypothetical protein singleton unknown function unknown function 1 852 1037
YP_009187436.1 NC_028657_p39 hypothetical protein phrog_3774 unknown function unknown function -1 16439 16807
YP_009187479.1 NC_028657_p82 transposase phrog_513 transposase integration and excision -1 45943 46539
YP_009187426.1 NC_028657_p29 hypothetical protein phrog_343 unknown function unknown function 1 11912 12220
YP_009187487.1 NC_028657_p90 hypothetical protein phrog_17123 unknown function unknown function -1 48897 49100
YP_009187461.1 NC_028657_p64 hypothetical protein phrog_24 tail length tape measure protein tail -1 30878 33898
YP_009187463.1 NC_028657_p66 hypothetical protein phrog_680 tail length tape measure protein tail -1 34733 34957
YP_009187442.1 NC_028657_p45 hypothetical protein phrog_2398 unknown function unknown function -1 19508 19810
YP_009187478.1 NC_028657_p81 hypothetical protein phrog_546 unknown function unknown function -1 45434 45910
YP_009187418.1 NC_028657_p21 hypothetical protein phrog_17089 unknown function unknown function 1 8548 8772
YP_009187435.1 NC_028657_p38 hypothetical protein phrog_12841 unknown function unknown function 1 15858 16175
YP_009187403.1 NC_028657_p6 hypothetical protein phrog_1273 unknown function unknown function 1 1883 2170
YP_009187467.1 NC_028657_p70 hypothetical protein phrog_1136 unknown function unknown function -1 36551 37273
YP_009187455.1 NC_028657_p58 hypothetical protein phrog_6632 unknown function unknown function -1 28180 28326
YP_009187450.1 NC_028657_p53 hypothetical protein singleton unknown function unknown function -1 26698 26931
YP_009187484.1 NC_028657_p87 hypothetical protein singleton unknown function unknown function -1 47809 47937
YP_009187500.1 NC_028657_p103 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 53509 54849
YP_009187505.1 NC_028657_p108 hypothetical protein phrog_4 transcriptional repressor transcription regulation 1 56906 57739
YP_009187491.1 NC_028657_p94 hypothetical protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism -1 50529 51173
YP_009187475.1 NC_028657_p78 hypothetical protein phrog_241 head morphogenesis head and packaging -1 41671 42750
YP_009187444.1 NC_028657_p47 hypothetical protein phrog_3370 unknown function unknown function -1 20614 21300
YP_009187424.1 NC_028657_p27 hypothetical protein phrog_5315 unknown function unknown function 1 11611 11757
YP_009187499.1 NC_028657_p102 hypothetical protein singleton unknown function unknown function -1 52823 53509
YP_009187407.1 NC_028657_p10 hypothetical protein phrog_13871 unknown function unknown function 1 3618 4001
YP_009187483.1 NC_028657_p86 hypothetical protein phrog_1046 unknown function unknown function -1 47576 47809
YP_009187398.1 NC_028657_p1 hypothetical protein singleton unknown function unknown function 1 410 655
YP_009187470.1 NC_028657_p73 hypothetical protein phrog_493 head-tail adaptor Ad1 connector -1 38522 38905
YP_009187431.1 NC_028657_p34 hypothetical protein singleton unknown function unknown function -1 13543 13674
YP_009187465.1 NC_028657_p68 hypothetical protein phrog_584 major tail protein tail -1 35368 36024
YP_009187504.1 NC_028657_p107 hypothetical protein phrog_409 transcriptional regulator transcription regulation -1 56637 56816
YP_009187432.1 NC_028657_p35 hypothetical protein phrog_1 integrase integration and excision 1 13840 14949
YP_009187405.1 NC_028657_p8 hypothetical protein phrog_4801 unknown function unknown function 1 2693 3112
YP_009187419.1 NC_028657_p22 hypothetical protein phrog_3956 unknown function unknown function 1 8769 9935
YP_009187498.1 NC_028657_p101 hypothetical protein phrog_8532 unknown function unknown function -1 52710 52826
YP_009187415.1 NC_028657_p18 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7273 7722
YP_009187446.1 NC_028657_p49 hypothetical protein phrog_17867 unknown function unknown function 1 25223 25465
YP_009187492.1 NC_028657_p95 hypothetical protein phrog_26412 unknown function unknown function -1 51170 51403
YP_009187476.1 NC_028657_p79 hypothetical protein phrog_145 portal protein head and packaging -1 42747 44135
YP_009187438.1 NC_028657_p41 hypothetical protein singleton unknown function unknown function 1 17224 17412
YP_009187503.1 NC_028657_p106 hypothetical protein phrog_163 CII-like transcriptional activator transcription regulation -1 56029 56601
YP_009187441.1 NC_028657_p44 hypothetical protein phrog_2687 unknown function unknown function -1 19272 19511
YP_009187434.1 NC_028657_p37 hypothetical protein phrog_3580 unknown function unknown function -1 15444 15719
YP_009187488.1 NC_028657_p91 hypothetical protein singleton unknown function unknown function -1 49416 49580
YP_009187510.1 NC_028657_p113 hypothetical protein phrog_2707 unknown function unknown function -1 60434 60760
YP_009187399.1 NC_028657_p2 hypothetical protein singleton unknown function unknown function 1 652 810
YP_009187414.1 NC_028657_p17 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism 1 6650 7276
YP_009187452.1 NC_028657_p55 hypothetical protein singleton unknown function unknown function 1 27597 27728
YP_009187404.1 NC_028657_p7 hypothetical protein phrog_924 unknown function unknown function 1 2204 2398
YP_009187427.1 NC_028657_p30 hypothetical protein singleton unknown function unknown function 1 12217 12444
YP_009187474.1 NC_028657_p77 hypothetical protein phrog_784 unknown function unknown function -1 40769 41554
YP_009187460.1 NC_028657_p63 minor tail protein M phrog_14 minor tail protein tail -1 30534 30872
YP_009187453.1 NC_028657_p56 hypothetical protein phrog_38193 unknown function unknown function -1 27712 27960
YP_009187473.1 NC_028657_p76 hypothetical protein phrog_247 major head protein head and packaging -1 39684 40664
YP_009187495.1 NC_028657_p98 NinB phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism -1 51815 52231
YP_009187493.1 NC_028657_p96 hypothetical protein phrog_21511 unknown function unknown function -1 51400 51558
YP_009187471.1 NC_028657_p74 hypothetical protein singleton unknown function unknown function -1 38902 39165
YP_009187422.1 NC_028657_p25 hypothetical protein phrog_4568 unknown function unknown function 1 10942 11142
YP_009187416.1 NC_028657_p19 hypothetical protein phrog_12813 unknown function unknown function 1 7786 8385
YP_009187457.1 NC_028657_p60 hypothetical protein phrog_29001 unknown function unknown function -1 28823 28999
YP_009187480.1 NC_028657_p83 hypothetical protein phrog_5901 unknown function unknown function 1 46624 46830
YP_009187423.1 NC_028657_p26 hypothetical protein phrog_10472 unknown function unknown function 1 11135 11434
YP_009187481.1 NC_028657_p84 hypothetical protein phrog_35260 unknown function unknown function 1 46885 47271
YP_009187410.1 NC_028657_p13 hypothetical protein phrog_5864 unknown function unknown function 1 4290 4427
YP_009187459.1 NC_028657_p62 hypothetical protein phrog_18 minor tail protein tail -1 29788 30537
YP_009187408.1 NC_028657_p11 hypothetical protein phrog_21577 unknown function unknown function 1 3998 4111
YP_009187490.1 NC_028657_p93 hypothetical protein phrog_3373 unknown function unknown function -1 49846 50532
YP_009187437.1 NC_028657_p40 endolysin phrog_7 endolysin lysis -1 16804 17238
YP_009187447.1 NC_028657_p50 hypothetical protein phrog_27580 unknown function unknown function -1 25462 25677