Genomic map of Pseudomonas phage PPPL-1 (NC_028661)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028661
Definition
Pseudomonas phage PPPL-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus; Pseudomonas virus PPPL1.
DB of origin
REFSEQ
Length
41149
Host Name
Pseudomonas syringae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
57
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009187960.1 NC_028661_p15 hypothetical protein phrog_1777 unknown function unknown function 1 9539 9790
YP_009187989.1 NC_028661_p44 hypothetical protein phrog_1795 tail fiber protein tail 1 37337 37696
YP_009187964.1 NC_028661_p19 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 11004 11717
YP_009187972.1 NC_028661_p27 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 17842 18240
YP_009187984.1 NC_028661_p39 internal virion protein A phrog_308 internal virion protein head and packaging 1 27867 28307
YP_009187974.1 NC_028661_p29 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 18642 19694
YP_009187982.1 NC_028661_p37 tail tubular protein A phrog_446 tail protein tail 1 24799 25380
YP_009187966.1 NC_028661_p21 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 12160 12600
YP_009187949.1 NC_028661_p4 hypothetical protein singleton unknown function unknown function 1 1910 2116
YP_009187948.1 NC_028661_p3 hypothetical protein phrog_25437 unknown function unknown function 1 1491 1913
YP_009187947.1 NC_028661_p2 hypothetical protein singleton unknown function unknown function 1 1146 1421
YP_009187980.1 NC_028661_p35 capsid assembly protein phrog_1052 head assembly head and packaging 1 22738 23604
YP_009187958.1 NC_028661_p13 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 8205 9344
YP_009187987.1 NC_028661_p42 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 31094 35296
YP_009187951.1 NC_028661_p6 hypothetical protein phrog_8679 unknown function unknown function 1 2642 3217
YP_009187953.1 NC_028661_p8 hypothetical protein phrog_9238 unknown function unknown function 1 4132 4542
YP_009187959.1 NC_028661_p14 hypothetical protein singleton unknown function unknown function 1 9466 9786
YP_009187993.1 NC_028661_p48 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 38633 40369
YP_009187985.1 NC_028661_p40 internal virion protein B phrog_805 internal virion protein head and packaging 1 28318 28896
YP_009187954.1 NC_028661_p9 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 4685 7366
YP_009187957.1 NC_028661_p12 hypothetical protein phrog_12775 unknown function unknown function 1 7802 8200
YP_009187990.1 NC_028661_p45 type II holin phrog_920 holin lysis 1 37696 37914
YP_009187978.1 NC_028661_p33 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 20694 21002
YP_009187963.1 NC_028661_p18 hypothetical protein phrog_5138 unknown function unknown function 1 10603 10953
YP_009187992.1 NC_028661_p47 Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 38181 38636
YP_009187971.1 NC_028661_p26 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 15753 17867
YP_009187994.1 NC_028661_p49 hypothetical protein phrog_2193 unknown function unknown function 1 40565 40738
YP_009187979.1 NC_028661_p34 head-tail connector protein phrog_449 head-tail adaptor connector 1 21014 22648
YP_009187977.1 NC_028661_p32 hypothetical protein phrog_3986 unknown function unknown function 1 20279 20722
YP_009187965.1 NC_028661_p20 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 11717 12160
YP_009187986.1 NC_028661_p41 internal virion protein C phrog_1339 internal virion protein head and packaging 1 28889 31081
YP_009187952.1 NC_028661_p7 hypothetical protein phrog_61 2OG-Fe(II) oxygenase moron, auxiliary metabolic gene and host takeover 1 3214 3927
YP_009187991.1 NC_028661_p46 DNA packaging protein small subunit phrog_1351 terminase small subunit head and packaging 1 37911 38168
YP_009187961.1 NC_028661_p16 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 9783 10439
YP_009187946.1 NC_028661_p1 hypothetical protein phrog_16407 unknown function unknown function 1 851 1141
YP_009187969.1 NC_028661_p24 hypothetical protein phrog_30195 unknown function unknown function 1 14943 15158
YP_009187975.1 NC_028661_p30 hypothetical protein phrog_1447 unknown function unknown function 1 19762 20004
YP_009187983.1 NC_028661_p38 tail tubular protein B phrog_457 tail protein tail 1 25391 27808
YP_009187956.1 NC_028661_p11 hypothetical protein phrog_11287 unknown function unknown function 1 7512 7802
YP_009187988.1 NC_028661_p43 tail fiber protein phrog_4242 tail fiber protein tail 1 35359 37299
YP_009187962.1 NC_028661_p17 host RNA-polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 10436 10606
YP_009187973.1 NC_028661_p28 hypothetical protein phrog_1334 unknown function unknown function 1 18237 18446
YP_009187981.1 NC_028661_p36 major capsid protein phrog_267 major head protein head and packaging 1 23705 24733
YP_009187955.1 NC_028661_p10 hypothetical protein phrog_13030 RNA polymerase DNA, RNA and nucleotide metabolism 1 7378 7515
YP_009187970.1 NC_028661_p25 hypothetical protein phrog_9312 unknown function unknown function 1 15245 15739
YP_009187976.1 NC_028661_p31 hypothetical protein phrog_1391 unknown function unknown function 1 20007 20282
YP_009187967.1 NC_028661_p22 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 12681 13229
YP_009187950.1 NC_028661_p5 hypothetical protein singleton unknown function unknown function 1 2176 2559
YP_009187968.1 NC_028661_p23 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 13216 14928