| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028661 |
Definition |
Pseudomonas phage PPPL-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus; Pseudomonas virus PPPL1. |
DB of origin |
REFSEQ |
Length |
41149 |
Host Name |
Pseudomonas syringae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
57 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009187960.1 | NC_028661_p15 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 9539 | 9790 |
| YP_009187989.1 | NC_028661_p44 | hypothetical protein | phrog_1795 | tail fiber protein | tail | 1 | 37337 | 37696 |
| YP_009187964.1 | NC_028661_p19 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 11004 | 11717 |
| YP_009187972.1 | NC_028661_p27 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17842 | 18240 |
| YP_009187984.1 | NC_028661_p39 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 27867 | 28307 |
| YP_009187974.1 | NC_028661_p29 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18642 | 19694 |
| YP_009187982.1 | NC_028661_p37 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 24799 | 25380 |
| YP_009187966.1 | NC_028661_p21 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 12160 | 12600 |
| YP_009187949.1 | NC_028661_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1910 | 2116 |
| YP_009187948.1 | NC_028661_p3 | hypothetical protein | phrog_25437 | unknown function | unknown function | 1 | 1491 | 1913 |
| YP_009187947.1 | NC_028661_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1146 | 1421 |
| YP_009187980.1 | NC_028661_p35 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 22738 | 23604 |
| YP_009187958.1 | NC_028661_p13 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 8205 | 9344 |
| YP_009187987.1 | NC_028661_p42 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31094 | 35296 |
| YP_009187951.1 | NC_028661_p6 | hypothetical protein | phrog_8679 | unknown function | unknown function | 1 | 2642 | 3217 |
| YP_009187953.1 | NC_028661_p8 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 4132 | 4542 |
| YP_009187959.1 | NC_028661_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9466 | 9786 |
| YP_009187993.1 | NC_028661_p48 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 38633 | 40369 |
| YP_009187985.1 | NC_028661_p40 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 28318 | 28896 |
| YP_009187954.1 | NC_028661_p9 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4685 | 7366 |
| YP_009187957.1 | NC_028661_p12 | hypothetical protein | phrog_12775 | unknown function | unknown function | 1 | 7802 | 8200 |
| YP_009187990.1 | NC_028661_p45 | type II holin | phrog_920 | holin | lysis | 1 | 37696 | 37914 |
| YP_009187978.1 | NC_028661_p33 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20694 | 21002 |
| YP_009187963.1 | NC_028661_p18 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 10603 | 10953 |
| YP_009187992.1 | NC_028661_p47 | Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 38181 | 38636 |
| YP_009187971.1 | NC_028661_p26 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15753 | 17867 |
| YP_009187994.1 | NC_028661_p49 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 40565 | 40738 |
| YP_009187979.1 | NC_028661_p34 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 21014 | 22648 |
| YP_009187977.1 | NC_028661_p32 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 20279 | 20722 |
| YP_009187965.1 | NC_028661_p20 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11717 | 12160 |
| YP_009187986.1 | NC_028661_p41 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 28889 | 31081 |
| YP_009187952.1 | NC_028661_p7 | hypothetical protein | phrog_61 | 2OG-Fe(II) oxygenase | moron, auxiliary metabolic gene and host takeover | 1 | 3214 | 3927 |
| YP_009187991.1 | NC_028661_p46 | DNA packaging protein small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 37911 | 38168 |
| YP_009187961.1 | NC_028661_p16 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 9783 | 10439 |
| YP_009187946.1 | NC_028661_p1 | hypothetical protein | phrog_16407 | unknown function | unknown function | 1 | 851 | 1141 |
| YP_009187969.1 | NC_028661_p24 | hypothetical protein | phrog_30195 | unknown function | unknown function | 1 | 14943 | 15158 |
| YP_009187975.1 | NC_028661_p30 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 19762 | 20004 |
| YP_009187983.1 | NC_028661_p38 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 25391 | 27808 |
| YP_009187956.1 | NC_028661_p11 | hypothetical protein | phrog_11287 | unknown function | unknown function | 1 | 7512 | 7802 |
| YP_009187988.1 | NC_028661_p43 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 35359 | 37299 |
| YP_009187962.1 | NC_028661_p17 | host RNA-polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 10436 | 10606 |
| YP_009187973.1 | NC_028661_p28 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 18237 | 18446 |
| YP_009187981.1 | NC_028661_p36 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23705 | 24733 |
| YP_009187955.1 | NC_028661_p10 | hypothetical protein | phrog_13030 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7378 | 7515 |
| YP_009187970.1 | NC_028661_p25 | hypothetical protein | phrog_9312 | unknown function | unknown function | 1 | 15245 | 15739 |
| YP_009187976.1 | NC_028661_p31 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 20007 | 20282 |
| YP_009187967.1 | NC_028661_p22 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 12681 | 13229 |
| YP_009187950.1 | NC_028661_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2176 | 2559 |
| YP_009187968.1 | NC_028661_p23 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 13216 | 14928 |