| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028665 |
Definition |
Gordonia phage GTE6, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
56982 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
67.79 |
Number of singletons |
31 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009188439.1 | NC_028665_p71 | hypothetical protein | phrog_15317 | unknown function | unknown function | 1 | 51011 | 51286 |
| YP_009188386.1 | NC_028665_p18 | hypothetical protein | phrog_18402 | head maturation protease | head and packaging | 1 | 11027 | 13879 |
| YP_009188417.1 | NC_028665_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41493 | 41639 |
| YP_009188444.1 | NC_028665_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52833 | 53069 |
| YP_009188372.1 | NC_028665_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2723 | 2923 |
| YP_009188421.1 | NC_028665_p53 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 42181 | 43176 |
| YP_009188428.1 | NC_028665_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45562 | 46041 |
| YP_009188434.1 | NC_028665_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47732 | 48301 |
| YP_009188420.1 | NC_028665_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42014 | 42178 |
| YP_009188385.1 | NC_028665_p17 | hypothetical protein | phrog_17748 | unknown function | unknown function | 1 | 10760 | 10981 |
| YP_009188394.1 | NC_028665_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19842 | 20135 |
| YP_009188406.1 | NC_028665_p38 | lysin | phrog_2998 | endolysin | lysis | 1 | 34411 | 36045 |
| YP_009188451.1 | NC_028665_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55078 | 55488 |
| YP_009188445.1 | NC_028665_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53066 | 53278 |
| YP_009188435.1 | NC_028665_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48354 | 49775 |
| YP_009188432.1 | NC_028665_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47088 | 47441 |
| YP_009188380.1 | NC_028665_p12 | hypothetical protein | phrog_4980 | superinfection exclusion | moron, auxiliary metabolic gene and host takeover | 1 | 5362 | 5802 |
| YP_009188402.1 | NC_028665_p34 | hypothetical protein | phrog_7719 | minor tail protein | tail | 1 | 30398 | 31678 |
| YP_009188440.1 | NC_028665_p72 | hypothetical protein | phrog_30480 | unknown function | unknown function | 1 | 51283 | 51579 |
| YP_009188404.1 | NC_028665_p36 | hypothetical protein | phrog_8780 | minor tail protein | tail | 1 | 32032 | 33609 |
| YP_009188416.1 | NC_028665_p48 | hypothetical protein | phrog_14395 | unknown function | unknown function | 1 | 40982 | 41434 |
| YP_009188376.1 | NC_028665_p8 | hypothetical protein | phrog_21555 | unknown function | unknown function | 1 | 3969 | 4424 |
| YP_009188375.1 | NC_028665_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3774 | 3965 |
| YP_009188414.1 | NC_028665_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39613 | 39906 |
| YP_009188377.1 | NC_028665_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4474 | 4629 |
| YP_009188389.1 | NC_028665_p21 | hypothetical protein | phrog_779 | unknown function | unknown function | 1 | 16242 | 17072 |
| YP_009188447.1 | NC_028665_p79 | DNA polymerase III subunit epsilon | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 53903 | 54592 |
| YP_009188408.1 | NC_028665_p40 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 36569 | 37060 |
| YP_009188373.1 | NC_028665_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2923 | 3546 |
| YP_009188454.1 | NC_028665_p86 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 56599 | 56850 |
| YP_009188411.1 | NC_028665_p43 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 38035 | 38283 |
| YP_009188413.1 | NC_028665_p45 | hypothetical protein | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38462 | 39616 |
| YP_009188378.1 | NC_028665_p10 | hypothetical protein | phrog_13451 | unknown function | unknown function | 1 | 4626 | 4880 |
| YP_009188405.1 | NC_028665_p37 | hypothetical protein | phrog_2804 | virion structural protein | head and packaging | 1 | 33622 | 34326 |
| YP_009188384.1 | NC_028665_p16 | structural protein | phrog_18477 | head morphogenesis | head and packaging | 1 | 8361 | 10763 |
| YP_009188410.1 | NC_028665_p42 | hypothetical protein | phrog_17370 | unknown function | unknown function | 1 | 37596 | 38033 |
| YP_009188431.1 | NC_028665_p63 | holliday junction resolvase | singleton | unknown function | unknown function | 1 | 46835 | 47095 |
| YP_009188382.1 | NC_028665_p14 | structural protein | phrog_776 | portal protein | head and packaging | 1 | 6302 | 7978 |
| YP_009188443.1 | NC_028665_p75 | hypothetical protein | phrog_415 | polynucleotide kinase | other | 1 | 52375 | 52836 |
| YP_009188407.1 | NC_028665_p39 | holin | phrog_443 | holin | lysis | 1 | 36058 | 36567 |
| YP_009188381.1 | NC_028665_p13 | hypothetical protein | phrog_781 | unknown function | unknown function | 1 | 5949 | 6287 |
| YP_009188448.1 | NC_028665_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54589 | 54744 |
| YP_009188403.1 | NC_028665_p35 | hypothetical protein | phrog_1126 | unknown function | unknown function | 1 | 31697 | 32035 |
| YP_009188429.1 | NC_028665_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46038 | 46202 |
| YP_009188395.1 | NC_028665_p27 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 20119 | 20550 |
| YP_009188399.1 | NC_028665_p31 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 27069 | 28046 |
| YP_009188369.1 | NC_028665_p1 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 65 | 625 |
| YP_009188379.1 | NC_028665_p11 | hypothetical protein | phrog_33706 | unknown function | unknown function | 1 | 4914 | 5237 |
| YP_009188446.1 | NC_028665_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53343 | 53906 |
| YP_009188393.1 | NC_028665_p25 | hypothetical protein | phrog_810 | unknown function | unknown function | 1 | 19274 | 19837 |
| YP_009188436.1 | NC_028665_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49772 | 50149 |
| YP_009188387.1 | NC_028665_p19 | hypothetical protein | phrog_14225 | unknown function | unknown function | 1 | 14009 | 14155 |
| YP_009188452.1 | NC_028665_p84 | hypothetical protein | phrog_17681 | unknown function | unknown function | 1 | 55485 | 55895 |
| YP_009188392.1 | NC_028665_p24 | hypothetical protein | phrog_783 | head-tail adaptor | connector | 1 | 18480 | 19277 |
| YP_009188383.1 | NC_028665_p15 | hypothetical protein | phrog_14528 | unknown function | unknown function | 1 | 7975 | 8361 |
| YP_009188424.1 | NC_028665_p56 | hypothetical protein | phrog_33110 | unknown function | unknown function | 1 | 43844 | 44005 |
| YP_009188423.1 | NC_028665_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43476 | 43847 |
| YP_009188453.1 | NC_028665_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55892 | 56542 |
| YP_009188397.1 | NC_028665_p29 | hypothetical protein | phrog_13927 | unknown function | unknown function | 1 | 21222 | 21899 |
| YP_009188419.1 | NC_028665_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41823 | 42017 |
| YP_009188390.1 | NC_028665_p22 | hypothetical protein | phrog_14463 | unknown function | unknown function | 1 | 17086 | 17577 |
| YP_009188430.1 | NC_028665_p62 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46212 | 46838 |
| YP_009188401.1 | NC_028665_p33 | hypothetical protein | phrog_32570 | unknown function | unknown function | 1 | 29712 | 30401 |
| YP_009188425.1 | NC_028665_p57 | hypothetical protein | phrog_16769 | unknown function | unknown function | 1 | 44002 | 44412 |
| YP_009188400.1 | NC_028665_p32 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 28048 | 29667 |
| YP_009188422.1 | NC_028665_p54 | hypothetical protein | phrog_25695 | unknown function | unknown function | 1 | 43173 | 43394 |
| YP_009188426.1 | NC_028665_p58 | cutinase | phrog_102 | endolysin | lysis | 1 | 44409 | 45188 |
| YP_009188415.1 | NC_028665_p47 | recombinase | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39899 | 40960 |
| YP_009188374.1 | NC_028665_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3543 | 3758 |
| YP_009188409.1 | NC_028665_p41 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 37057 | 37491 |
| YP_009188442.1 | NC_028665_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52172 | 52378 |
| YP_009188449.1 | NC_028665_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54741 | 54896 |
| YP_009188437.1 | NC_028665_p69 | hypothetical protein | phrog_17794 | unknown function | unknown function | 1 | 50250 | 50750 |
| YP_009188371.1 | NC_028665_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2277 | 2726 |
| YP_009188412.1 | NC_028665_p44 | hypothetical protein | phrog_926 | unknown function | unknown function | 1 | 38280 | 38465 |
| YP_009188396.1 | NC_028665_p28 | hypothetical protein | phrog_14331 | unknown function | unknown function | 1 | 20594 | 21208 |
| YP_009188388.1 | NC_028665_p20 | structural protein | phrog_777 | major head protein | head and packaging | 1 | 14261 | 16150 |
| YP_009188438.1 | NC_028665_p70 | hypothetical protein | phrog_13001 | unknown function | unknown function | 1 | 50747 | 51001 |
| YP_009188418.1 | NC_028665_p50 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 41632 | 41817 |
| YP_009188433.1 | NC_028665_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47434 | 47742 |
| YP_009188441.1 | NC_028665_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51576 | 52175 |
| YP_009188450.1 | NC_028665_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54893 | 55081 |
| YP_009188370.1 | NC_028665_p2 | large terminase subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 622 | 2220 |
| YP_009188391.1 | NC_028665_p23 | structural protein | phrog_792 | major tail protein | tail | 1 | 17681 | 18376 |
| YP_009188398.1 | NC_028665_p30 | tape measure protein | phrog_6090 | tail length tape measure protein | tail | 1 | 21946 | 27066 |
| YP_009188427.1 | NC_028665_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45185 | 45565 |