| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028666 |
Definition |
Streptococcus phage Str-PAP-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
36595 |
Host Name |
Streptococcus parauberis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
35.28 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009188508.1 | NC_028666_p54 | hypothetical protein | phrog_2164 | unknown function | unknown function | -1 | 35213 | 35581 |
| YP_009188478.1 | NC_028666_p24 | hypothetical protein | phrog_1633 | unknown function | unknown function | -1 | 20227 | 20592 |
| YP_009188499.1 | NC_028666_p45 | hypothetical protein | phrog_2397 | unknown function | unknown function | -1 | 32083 | 32256 |
| YP_009188496.1 | NC_028666_p42 | hypothetical protein | phrog_26340 | unknown function | unknown function | -1 | 31285 | 31632 |
| YP_009188472.1 | NC_028666_p18 | minor tail protein | phrog_588 | tail fiber protein and host specificity | tail | -1 | 11913 | 14876 |
| YP_009188486.1 | NC_028666_p32 | capsid protein | phrog_10 | major head protein | head and packaging | -1 | 22870 | 23775 |
| YP_009188495.1 | NC_028666_p41 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | -1 | 30601 | 31017 |
| YP_009188488.1 | NC_028666_p34 | terminase | phrog_9 | terminase large subunit | head and packaging | -1 | 24316 | 25728 |
| YP_009188500.1 | NC_028666_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32249 | 32428 |
| YP_009188489.1 | NC_028666_p35 | hypothetical protein | phrog_15305 | unknown function | unknown function | -1 | 25904 | 26140 |
| YP_009188494.1 | NC_028666_p40 | endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29447 | 29788 |
| YP_009188509.1 | NC_028666_p55 | hypothetical protein | phrog_4161 | unknown function | unknown function | -1 | 35574 | 35816 |
| YP_009188505.1 | NC_028666_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33447 | 33650 |
| YP_009188469.1 | NC_028666_p15 | holin | phrog_297 | holin | lysis | -1 | 9137 | 9415 |
| YP_009188491.1 | NC_028666_p37 | portal protein | phrog_104 | portal protein | head and packaging | -1 | 26823 | 28058 |
| YP_009188470.1 | NC_028666_p16 | hypothetical protein | phrog_1009 | unknown function | unknown function | -1 | 9412 | 9765 |
| YP_009188459.1 | NC_028666_p5 | hypothetical protein | phrog_3377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 4345 | 4773 |
| YP_009188457.1 | NC_028666_p3 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 2467 | 2928 |
| YP_009188473.1 | NC_028666_p19 | tail component | phrog_202 | distal tail protein Dit | tail | -1 | 14880 | 16379 |
| YP_009188485.1 | NC_028666_p31 | hypothetical protein | phrog_5279 | unknown function | unknown function | -1 | 22738 | 22854 |
| YP_009188464.1 | NC_028666_p10 | hypothetical protein | phrog_1022 | unknown function | unknown function | -1 | 6571 | 6696 |
| YP_009188483.1 | NC_028666_p29 | hypothetical protein | phrog_501 | head closure Hc1 | connector | -1 | 21997 | 22335 |
| YP_009188468.1 | NC_028666_p14 | endolysin | phrog_8577 | endolysin | lysis | -1 | 7814 | 9133 |
| YP_009188481.1 | NC_028666_p27 | hypothetical protein | phrog_123 | tail terminator | connector | -1 | 21433 | 21768 |
| YP_009188492.1 | NC_028666_p38 | hypothetical protein | phrog_2862 | unknown function | unknown function | -1 | 28055 | 28402 |
| YP_009188502.1 | NC_028666_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32695 | 32919 |
| YP_009188490.1 | NC_028666_p36 | hypothetical protein | phrog_2494 | minor head protein | head and packaging | -1 | 26144 | 26830 |
| YP_009188475.1 | NC_028666_p21 | endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 17924 | 18415 |
| YP_009188466.1 | NC_028666_p12 | hypothetical protein | phrog_11572 | unknown function | unknown function | -1 | 7021 | 7194 |
| YP_009188497.1 | NC_028666_p43 | oxidase | singleton | unknown function | unknown function | -1 | 31629 | 31844 |
| YP_009188501.1 | NC_028666_p47 | hypothetical protein | phrog_1027 | unknown function | unknown function | -1 | 32432 | 32698 |
| YP_009188456.1 | NC_028666_p2 | hypothetical protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 1659 | 2465 |
| YP_009188467.1 | NC_028666_p13 | Cro/Cl family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 7207 | 7416 |
| YP_009188498.1 | NC_028666_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31841 | 32086 |
| YP_009188493.1 | NC_028666_p39 | hypothetical protein | phrog_1271 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28496 | 29335 |
| YP_009188455.1 | NC_028666_p1 | primase | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 131 | 1681 |
| YP_009188477.1 | NC_028666_p23 | hypothetical protein | phrog_6900 | tail length tape measure protein | tail | -1 | 19741 | 20226 |
| YP_009188471.1 | NC_028666_p17 | neck passage structure protein | phrog_19519 | neck protein | connector | -1 | 9778 | 11901 |
| YP_009188465.1 | NC_028666_p11 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 6693 | 6941 |
| YP_009188484.1 | NC_028666_p30 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | -1 | 22298 | 22720 |
| YP_009188482.1 | NC_028666_p28 | hypothetical protein | phrog_387 | neck protein | connector | -1 | 21765 | 22004 |
| YP_009188479.1 | NC_028666_p25 | hypothetical protein | phrog_1526 | unknown function | unknown function | -1 | 20607 | 20867 |
| YP_009188480.1 | NC_028666_p26 | structural protein | phrog_117 | major tail protein | tail | -1 | 20864 | 21418 |
| YP_009188507.1 | NC_028666_p53 | hypothetical protein | phrog_1485 | unknown function | unknown function | -1 | 34945 | 35220 |
| YP_009188510.1 | NC_028666_p56 | hypothetical protein | phrog_1921 | unknown function | unknown function | -1 | 35813 | 36172 |
| YP_009188458.1 | NC_028666_p4 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 2933 | 4261 |
| YP_009188462.1 | NC_028666_p8 | DNA-binding helix-turn-helix protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 5972 | 6328 |
| YP_009188460.1 | NC_028666_p6 | nucleoside triphosphate binding motifs protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 4770 | 5477 |
| YP_009188506.1 | NC_028666_p52 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 33735 | 34952 |
| YP_009188503.1 | NC_028666_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32919 | 33092 |
| YP_009188474.1 | NC_028666_p20 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | -1 | 16379 | 17818 |
| YP_009188504.1 | NC_028666_p50 | hypothetical protein | phrog_20217 | unknown function | unknown function | -1 | 33089 | 33454 |
| YP_009188511.1 | NC_028666_p57 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 36162 | 36479 |
| YP_009188487.1 | NC_028666_p33 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | -1 | 23781 | 24359 |
| YP_009188461.1 | NC_028666_p7 | hypothetical protein | phrog_4084 | unknown function | unknown function | -1 | 5464 | 5745 |
| YP_009188463.1 | NC_028666_p9 | hypothetical protein | phrog_8688 | unknown function | unknown function | -1 | 6329 | 6574 |
| YP_009188476.1 | NC_028666_p22 | endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | -1 | 18783 | 19403 |